LNCPNKY

Summary

LNCPNKY (lncRNA POU3F2 adjacent neural key regulator, HGNC:51638) is a long non-coding RNA gene on chromosome 6q16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51638
Approved symbol	LNCPNKY
Name	lncRNA POU3F2 adjacent neural key regulator
Location	6q16.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	pinky, PNKY
Ensembl gene	ENSG00000283010
Ensembl biotype	lncRNA
Entrez	105447646

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000635423, ENST00000842171

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000635423 — 3 exons

Exon	Start	End
ENSE00003785566	98832270	98832508
ENSE00003788669	98831077	98831387
ENSE00003789693	98829967	98830409

Expression profiles

Bgee: expression breadth broad, 59 present calls, max score 78.22.

Top tissues by expression

59 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.22	silver quality
ventricular zone	UBERON:0003053	63.92	gold quality
ganglionic eminence	UBERON:0004023	61.64	gold quality
muscle tissue	UBERON:0002385	57.90	silver quality
skeletal muscle tissue	UBERON:0001134	54.66	gold quality
substantia nigra	UBERON:0002038	54.46	gold quality
primary visual cortex	UBERON:0002436	53.00	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.82	gold quality
prefrontal cortex	UBERON:0000451	52.71	gold quality
cortex of kidney	UBERON:0001225	51.26	silver quality
caudate nucleus	UBERON:0001873	51.25	gold quality
blood	UBERON:0000178	51.06	gold quality
frontal cortex	UBERON:0001870	50.39	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.29	gold quality
brain	UBERON:0000955	49.89	gold quality
putamen	UBERON:0001874	49.89	gold quality
nucleus accumbens	UBERON:0001882	49.81	gold quality
hypothalamus	UBERON:0001898	49.66	gold quality
cerebral cortex	UBERON:0000956	49.48	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.35	gold quality
superior frontal gyrus	UBERON:0002661	49.25	gold quality
multicellular organism	UBERON:0000468	49.18	gold quality
temporal lobe	UBERON:0001871	49.08	gold quality
amygdala	UBERON:0001876	48.99	gold quality
right frontal lobe	UBERON:0002810	48.50	gold quality
Ammon’s horn	UBERON:0001954	48.41	gold quality
anterior cingulate cortex	UBERON:0009835	47.62	gold quality
prostate gland	UBERON:0002367	47.35	silver quality
gall bladder	UBERON:0002110	47.28	gold quality
muscle of leg	UBERON:0001383	47.18	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 2)

• Blood and tissue levels of lncRNAs in periodontitis. (PMID:32372456)
• Expression of BDNF-Associated lncRNAs in Treatment-Resistant Schizophrenia Patients. (PMID:33403596)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.