LNCROPM

Summary

LNCROPM (lncRNA regulator of PLAAT3 mediated phospholipid metabolism, HGNC:58146) is a long non-coding RNA gene on chromosome 11q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58146
Approved symbol	LNCROPM
Name	lncRNA regulator of PLAAT3 mediated phospholipid metabolism
Location	11q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256789
Ensembl biotype	lncRNA
Entrez	139225793
RNAcentral	URS0002A1F107 — lncRNA, 729 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000540307, ENST00000542805

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000540307 — 4 exons

Exon	Start	End
ENSE00002246639	63650560	63650747
ENSE00004035569	63616293	63616412
ENSE00004035570	63658787	63658962
ENSE00004035571	63637491	63637735

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 84.33.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.33	gold quality
calcaneal tendon	UBERON:0003701	74.54	gold quality
sural nerve	UBERON:0015488	74.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.03	gold quality
skeletal muscle tissue	UBERON:0001134	69.55	silver quality
hindlimb stylopod muscle	UBERON:0004252	69.06	gold quality
bone marrow cell	CL:0002092	68.33	silver quality
corpus callosum	UBERON:0002336	65.34	gold quality
bone marrow	UBERON:0002371	64.13	gold quality
endometrium	UBERON:0001295	64.03	gold quality
tonsil	UBERON:0002372	63.67	silver quality
lymph node	UBERON:0000029	61.85	gold quality
colonic epithelium	UBERON:0000397	61.22	silver quality
monocyte	CL:0000576	60.36	gold quality
stromal cell of endometrium	CL:0002255	58.55	gold quality
prefrontal cortex	UBERON:0000451	58.52	gold quality
liver	UBERON:0002107	58.45	gold quality
gall bladder	UBERON:0002110	58.45	gold quality
islet of Langerhans	UBERON:0000006	58.29	gold quality
urinary bladder	UBERON:0001255	58.26	gold quality
duodenum	UBERON:0002114	57.97	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.73	gold quality
superior frontal gyrus	UBERON:0002661	57.29	gold quality
vermiform appendix	UBERON:0001154	56.41	gold quality
mucosa of stomach	UBERON:0001199	56.20	gold quality
placenta	UBERON:0001987	56.00	gold quality
cortex of kidney	UBERON:0001225	55.93	gold quality
muscle of leg	UBERON:0001383	55.52	gold quality
blood	UBERON:0000178	55.15	gold quality
adrenal tissue	UBERON:0018303	54.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.