LNMICC

Summary

LNMICC (lncRNA associated with lymph node metastasis in cervical cancer, HGNC:56001) is a long non-coding RNA gene on chromosome 8q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56001
Approved symbol	LNMICC
Name	lncRNA associated with lymph node metastasis in cervical cancer
Location	8q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254027
Ensembl biotype	lncRNA
Entrez	123706532
RNAcentral	URS00026A2581 — lncRNA, 5070 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000517670, ENST00000518880, ENST00000720861, ENST00000720862, ENST00000720863

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517670 — 2 exons

Exon	Start	End
ENSE00004040049	81279703	81280376
ENSE00004040057	81280595	81280835

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 96.30.

Top tissues by expression

247 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	96.30	gold quality
left testis	UBERON:0004533	94.01	gold quality
right testis	UBERON:0004534	92.98	gold quality
testis	UBERON:0000473	90.68	gold quality
lower esophagus mucosa	UBERON:0035834	90.46	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.26	gold quality
adult organism	UBERON:0007023	83.84	gold quality
esophagus mucosa	UBERON:0002469	82.69	gold quality
ventricular zone	UBERON:0003053	81.42	gold quality
epithelial cell of pancreas	CL:0000083	80.37	gold quality
kidney epithelium	UBERON:0004819	79.60	gold quality
vagina	UBERON:0000996	78.86	gold quality
vena cava	UBERON:0004087	77.76	gold quality
ganglionic eminence	UBERON:0004023	77.66	gold quality
left ventricle myocardium	UBERON:0006566	77.53	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	77.20	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	77.10	gold quality
sural nerve	UBERON:0015488	77.01	gold quality
cardiac muscle of right atrium	UBERON:0003379	76.83	gold quality
nasal cavity epithelium	UBERON:0005384	76.76	gold quality
biceps brachii	UBERON:0001507	76.69	gold quality
upper arm skin	UBERON:0004263	76.31	gold quality
middle temporal gyrus	UBERON:0002771	76.19	silver quality
heart right ventricle	UBERON:0002080	75.77	gold quality
cardia of stomach	UBERON:0001162	75.31	gold quality
inferior vagus X ganglion	UBERON:0005363	74.92	gold quality
subthalamic nucleus	UBERON:0001906	74.77	gold quality
pharyngeal mucosa	UBERON:0000355	74.65	gold quality
layer of synovial tissue	UBERON:0007616	74.64	gold quality
cerebellar vermis	UBERON:0004720	74.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	8.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.