Send feedback

LPAR3

gene
On this page

Also known as LP-A3Edg-7RP4-678I3HOFNH30LPA3

Summary

LPAR3 (lysophosphatidic acid receptor 3, HGNC:14298) is a protein-coding gene on chromosome 1p22.3, encoding Lysophosphatidic acid receptor 3 (Q9UBY5). Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities.

This gene encodes a member of the G protein-coupled receptor family, as well as the EDG family of proteins. This protein functions as a cellular receptor for lysophosphatidic acid and mediates lysophosphatidic acid-evoked calcium mobilization. This receptor couples predominantly to G(q/11) alpha proteins.

Source: NCBI Gene 23566 — RefSeq curated summary.

At a glance

  • GWAS associations: 10
  • Clinical variants (ClinVar): 69 total
  • Expression (HPA): Tissue enhanced — highest in fallopian tube, area postrema, dorsal motor vagal complex
  • GTEx eGene: eQTL in 27 tissues, sQTL in 1 (q < 0.05)
  • Constraint (gnomAD): pLI 0.78 (intermediate), LOEUF 0.62 (unconstrained)
  • MANE Select transcript: NM_012152
  • Notable: 69 clinical variants but no curated precision-oncology (CIViC) evidence yet

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:14298
Approved symbolLPAR3
Namelysophosphatidic acid receptor 3
Location1p22.3
Locus typegene with protein product
StatusApproved
AliasesLP-A3, Edg-7, RP4-678I3, HOFNH30, LPA3
Ensembl geneENSG00000171517
Ensembl biotypeprotein_coding
OMIM605106
Entrez23566

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 13 protein_coding, 1 protein_coding_CDS_not_defined

MANE Select: ENST00000370611

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 3: 1

ENST00000370611, ENST00000440886, ENST00000491034, ENST00000930963, ENST00000930964, ENST00000930965, ENST00000930966, ENST00000942299, ENST00000942300, ENST00000942301, ENST00000942302, ENST00000942303, ENST00001028116, ENST00001145346

RefSeq mRNA: 1 — MANE Select: NM_012152 NM_012152

CCDS: CCDS700

Canonical transcript exons

ENST00000370611 — 3 exons

ExonStartEnd
ENSE000016725808489301684893206
ENSE000017209888486538584866138
ENSE000038917308481160284814171

Expression profiles

Bgee: expression breadth ubiquitous, 170 present calls, max score 95.10.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0747 / max 38.1654, expressed in 389 samples.

Highest expression (Bgee): bronchial epithelial cell, uterine tube, epithelium of bronchus, bronchus, mucosa of paranasal sinus.

Genetic regulation across tissues (GTEx eQTL / sQTL)

LPAR3 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 27 tissues and its splicing (sQTL) in 1 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

showing 20 of 28 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Cells Cultured fibroblastseqtl4.8e-52+0.441:84883501:T:C
Cells EBV-transformed lymphocyteseqtl1.4e-34+1.001:84926641:C:T
Whole Bloodeqtl7.1e-23+0.491:84893289:C:T
Lungeqtl4.1e-16-0.311:84873395:C:T
Spleeneqtl2.7e-14+0.851:84926641:C:T
Esophagus Mucosaeqtl3.7e-12-0.271:84888880:G:A
Skin Sun Exposed Lower legeqtl9.4e-09+0.241:84842841:T:G
Brain Cerebellar Hemisphereeqtl4.5e-08+0.511:84777740:G:T
Skin Not Sun Exposed Suprapubiceqtl5.8e-07+0.261:84842841:T:G
Brain Cerebellumeqtl1.0e-05+0.411:84776811:C:T
Brain Cortexeqtl1.7e-05+0.311:84761787:G:C
Brain Hippocampuseqtl2.4e-05+0.351:84755059:C:CGT
Brain Anterior cingulate cortex BA24eqtl3.1e-05+0.351:84761787:G:C
Small Intestine Terminal Ileumeqtl2.7e-04+0.551:84926641:C:T
Brain Frontal Cortex BA9eqtl4.1e-04+0.261:84762642:C:T
Minor Salivary Glandeqtl1.1e-03+0.651:84842841:T:G
Colon Transverseeqtl1.2e-03+0.191:84893414:G:A
Stomacheqtl1.8e-03+0.291:84882814:T:G
Testiseqtl3.1e-03+0.121:84873395:C:T
Thyroideqtl6.1e-03+0.211:84887029:T:A

FANTOM5 promoters

1 alternative TSS:

Promoter IDTPM avgSamples expressed
130111.0747389

Top tissues by expression

showing 100 of 258 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
bronchial epithelial cellCL:000232895.10gold quality
right uterine tubeUBERON:000130291.83gold quality
epithelium of bronchusUBERON:000203190.03gold quality
bronchusUBERON:000218589.18gold quality
mucosa of paranasal sinusUBERON:000503088.57gold quality
dorsal root ganglionUBERON:000004485.67gold quality
olfactory segment of nasal mucosaUBERON:000538685.10gold quality
trigeminal ganglionUBERON:000167581.63gold quality
cardiac atriumUBERON:000208181.52gold quality
right atrium auricular regionUBERON:000663181.49gold quality
myocardiumUBERON:000234980.62silver quality
cardiac muscle of right atriumUBERON:000337979.88silver quality
oviduct epitheliumUBERON:000480479.33gold quality
fallopian tubeUBERON:000388978.82gold quality
body of pancreasUBERON:000115078.72gold quality
endometriumUBERON:000129578.10gold quality
lower esophagus mucosaUBERON:003583477.73gold quality
urethraUBERON:000005777.01gold quality
prostate glandUBERON:000236776.94gold quality
nasal cavity mucosaUBERON:000182676.79gold quality
epithelium of nasopharynxUBERON:000195176.20gold quality
heart right ventricleUBERON:000208075.99silver quality
esophagus mucosaUBERON:000246975.90gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047375.89gold quality
gingival epitheliumUBERON:000194975.70gold quality
heart left ventricleUBERON:000208474.70gold quality
cardiac ventricleUBERON:000208274.64gold quality
gingivaUBERON:000182874.39gold quality
nasal cavity epitheliumUBERON:000538474.11silver quality
right testisUBERON:000453473.96gold quality
esophagus squamous epitheliumUBERON:000692073.72gold quality
heartUBERON:000094873.37gold quality
squamous epitheliumUBERON:000691473.25gold quality
testisUBERON:000047372.98gold quality
epithelium of esophagusUBERON:000197672.87gold quality
pancreasUBERON:000126472.68gold quality
left testisUBERON:000453372.43gold quality
stromal cell of endometriumCL:000225572.01gold quality
cauda epididymisUBERON:000436071.68gold quality
skin of hipUBERON:000155471.66gold quality
corpus epididymisUBERON:000435971.18gold quality
diaphragmUBERON:000110371.06gold quality
skin of abdomenUBERON:000141670.78gold quality
apex of heartUBERON:000209870.35gold quality
tibiaUBERON:000097969.99gold quality
mouth mucosaUBERON:000372969.91gold quality
minor salivary glandUBERON:000183069.68gold quality
zone of skinUBERON:000001469.56gold quality
saliva-secreting glandUBERON:000104469.13gold quality
cervix squamous epitheliumUBERON:000692269.09gold quality
skin of legUBERON:000151169.04gold quality
vaginaUBERON:000099669.03gold quality
upper leg skinUBERON:000426268.10gold quality
oral cavityUBERON:000016768.07silver quality
palpebral conjunctivaUBERON:000181267.83gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099167.41gold quality
tonsilUBERON:000237266.41gold quality
mammalian vulvaUBERON:000099765.80silver quality
urinary bladderUBERON:000125565.70gold quality
tracheaUBERON:000312665.05silver quality
upper arm skinUBERON:000426364.99gold quality
seminal vesicleUBERON:000099864.86silver quality
right frontal lobeUBERON:000281064.71gold quality
islet of LangerhansUBERON:000000664.44gold quality
vastus lateralisUBERON:000137964.41gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451164.38gold quality
right adrenal gland cortexUBERON:003582764.20gold quality
quadriceps femorisUBERON:000137764.08gold quality
prefrontal cortexUBERON:000045164.00gold quality
anterior cingulate cortexUBERON:000983563.59gold quality
cingulate cortexUBERON:000302763.55gold quality
pharyngeal mucosaUBERON:000035563.45silver quality
Ammon’s hornUBERON:000195463.30gold quality
penisUBERON:000098962.90silver quality
dorsolateral prefrontal cortexUBERON:000983462.83gold quality
frontal cortexUBERON:000187062.80gold quality
mucosa of transverse colonUBERON:000499162.61gold quality
Brodmann (1909) area 9UBERON:001354062.61gold quality
periodontal ligamentUBERON:000826662.41gold quality
female reproductive systemUBERON:000047462.36gold quality
superficial temporal arteryUBERON:000161462.29gold quality
right lungUBERON:000216762.23gold quality
neocortexUBERON:000195061.96gold quality
cerebral cortexUBERON:000095661.81gold quality
hair follicleUBERON:000207361.79gold quality
body of tongueUBERON:001187661.79gold quality
mucosa of urinary bladderUBERON:000125961.67gold quality
caput epididymisUBERON:000435861.55silver quality
vena cavaUBERON:000408761.42gold quality
uterusUBERON:000099561.09gold quality
saphenous veinUBERON:000731860.99gold quality
olfactory bulbUBERON:000226460.97gold quality
inferior vagus X ganglionUBERON:000536360.85gold quality
lower lobe of lungUBERON:000894960.82silver quality
dorsal plus ventral thalamusUBERON:000189760.81gold quality
type B pancreatic cellCL:000016960.73gold quality
pericardiumUBERON:000240760.69gold quality
lateral globus pallidusUBERON:000247660.64gold quality
substantia nigra pars reticulataUBERON:000196660.50gold quality
subthalamic nucleusUBERON:000190660.42gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes5.67
E-GEOD-124858no1.47

HPA expression

RNA tissue specificity: Tissue enhanced

showing 60 of 72 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPM
Fallopian tubetissue34.2
Prostatetissue12.6
Cervixtissue9.8
Pancreastissue9.8
Testistissue9.7
Heart muscletissue8.8
Postcentral gyrustissue7.2
Hippocampustissue6.4
Epididymistissue5.6
Salivary glandtissue5.4
Vaginatissue5.3
Urinary bladdertissue4.7
Nucleus accumbenstissue4.7
Esophagustissue4.2
Skin 1tissue3.7
Choroid plexustissue3.3
Endometrium 1tissue2.7
Locus coeruleustissue2.3
Thymustissue2.1
Basal gangliatissue1.6
Lungtissue1.4
Placentatissue1.3
Adrenal glandtissue1.3
Cerebellumtissue1.0
Seminal vesicletissue0.9
Putamentissue0.9
Spinal cordtissue0.9
Tonsiltissue0.9
Breasttissue0.8
Cerebral cortextissue0.8
Ventral forebraintissue0.8
Olfactory bulbtissue0.8
Retrosplenial cortextissue0.8
Prefrontal cortextissue0.7
Ovarytissue0.7
Amygdalatissue0.7
Corpus callosumtissue0.7
Hippocampal formationtissue0.7
Entorhinal cortextissue0.7
Retrosplenial and cingulate cortextissue0.7
Temporal cortextissue0.7
Occipital cortextissue0.7
Insular cortextissue0.7
Motor cortextissue0.6
Medulla oblongatatissue0.6
Hypothalamustissue0.6
Septumtissue0.6
Somatosensory cortextissue0.6
Rectumtissue0.5
Colontissue0.5
Superior colliculitissue0.5
Substantia nigratissue0.5
Gallbladdertissue0.5
Periaqueductal graytissue0.5
Ponstissue0.4
Skeletal muscletissue0.4
Midbraintissue0.4
Thalamustissue0.4
Stomach 1tissue0.3
Bone marrowtissue0.3

Brain sub-regions (HPA Brain Atlas): detected in 188; highest nTPM — Area postrema (17.2), Dorsal motor vagal complex (15.9), Nucleus gracilis (9.3), Nucleus tractus solitarii (9.1), Inferior parietal lobule (7.7).

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

Targeting LPAR3 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

23 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-141-3P99.9472.792421
HSA-MIR-200A-3P99.9472.682420
HSA-MIR-129799.9173.413162
HSA-MIR-4799-5P99.8270.602663
HSA-MIR-26A-5P99.7873.522303
HSA-MIR-26B-5P99.7873.512305
HSA-MIR-4524A-3P99.7266.852406
HSA-MIR-446599.7172.562096
HSA-MIR-64699.6867.841645
HSA-MIR-570099.6469.882280
HSA-MIR-451999.4866.10859
HSA-MIR-569799.3967.741249
HSA-MIR-155-5P99.3570.161509
HSA-MIR-190B-3P99.3368.291382
HSA-MIR-464199.2866.64744
HSA-MIR-3160-5P99.2869.071938
HSA-MIR-6737-3P98.9568.561577
HSA-MIR-7157-3P98.9568.701582
HSA-MIR-5008-3P98.7367.501433
HSA-MIR-4723-3P97.6765.911017
HSA-MIR-6769B-3P97.4165.531036
HSA-MIR-318397.4065.68978
HSA-MIR-4524B-3P95.5264.12964

Functional genomics

gnomAD constraint: pLI 0.778, LOEUF 0.623, missense Z 1.43 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD RMC): no regional variation along ENST00000370611 — one region, missense o/e 0.86.

Literature-anchored findings (GeneRIF, showing 39)

  • demonstrate that two biological fluids, blood plasma and seminal plasma, differentially activate LPA receptors (PMID:12123830)
  • results suggested that lysophosphatidic acid (LPA) receptors LPA(2) and LPA(3) may be involved in VEGF expression mediated by LPA signals in human ovarian oncogenesis (PMID:12668280)
  • data suggest that endothelial differentiation gene EDG-7 regulates Lysophosphatidic acid(LPA)-mediated mesangial cell proliferation and suggest that EDG-7 and EDG-2 LPA receptors play a diverse role in mesangial cell proliferation (PMID:15292052)
  • expression of LPA-induced inflammatory response genes is mediated by LPA1 and LPA3 (PMID:17923111)
  • Lysophosphatidic acid receptor 3 may contribute to the pathogenesis of rheumatoid arthritis through the modulation of fibroblast-like synoviocyte migration and cytokine production. (PMID:18006645)
  • Lysophosphatidic acid might regulate VEGF-C and lymphatic marker expression in endothelial cells, which contributes to endothelial cell tube formation in vitro and in vivo, thus facilitating endothelial cell participation lymphangiogenesis. (PMID:18627789)
  • Expression of LPA3 during ovarian carcinogenesis contributes to ovarian cancer aggressiveness, suggesting that the targeting of LPA production and action may have potential for the treatment of ovarian cancer. (PMID:19001604)
  • Switching of LPA receptor expression from LPA3 to LPA1, may be involved in prostate cancer progression and/or androgen independence (PMID:19025891)
  • LPA(1) receptor, LPA(2) and LPA(3) receptors-induced VASP phosphorylation is a critical mediator of tumor cell migration initiation (PMID:19081821)
  • LPA-stimulated cell growth is mediated by distinct but overlapping receptors and signaling pathways in these two model ovarian cancer cell lines. (PMID:19420982)
  • Data show that CLL cells express LPA receptors LPA(1-5) and VEGF receptors, and the plasma levels of VEGF are elevated in CLL patients. (PMID:19860625)
  • show that human microglia express LPA receptor subtypes LPA(1), LPA(2), and LPA(3) on mRNA and protein level. LPA activation of C13NJ cells induced Rho and extracellular signal-regulated kinase activation and enhanced cellular ATP production. (PMID:19899077)
  • Mutation in LPA3 gene indicate that the alterations in LPA receptor gene may play some role in pathogenesis in human osteosarcoma cells. (PMID:21116120)
  • found that LPA receptor 2/3-mediated IL-8 expression occurs through Gi/PI3K/AKT, Gi/PKC and IkappaB/NF-kappaB signaling (PMID:21964883)
  • study found that LPS induces both ATX and LPA3 expression in THP-1 cells; the PKR and SPK1-mediated pathways are involved in both ATX and LPA3 induction, resulting in the coordinate up-regulation of these two genes (PMID:22314276)
  • LPA3 Receptor act as a negative regulator on cell motile and invasive abilities of colon cancer. (PMID:22763559)
  • in the normal human menstrual cycle, lysophosphatidic acid receptor 3 messenger RNA and protein expression change, indicating that this gene may be related to the function of the endometrium. (PMID:22872026)
  • High LPAR3 expression is associated with aggressiveness of breast carcinoma. (PMID:22922883)
  • The results indicated that LPA(3) acts as a positive regulator of cell motility and invasion in sarcoma cells, suggesting that LPA signaling pathway via LPA(3) may be involved in the progression of sarcoma cells. (PMID:23167620)
  • Findings indicate lysophosphatidic acid (LPA)-lysophosphatidic acid receptor-Galpha13 signaling node as a therapeutic target for pancreatic cancer treatment and control. (PMID:23508014)
  • Lysophosphatidic acid (LPA) increased hepatocellular carcinoma cells cell invasion, which was LPA-receptor dependent. (PMID:23569130)
  • LPA3 mRNA is clearly expressed in human PANC-1 tumor cells. (PMID:24061591)
  • The results demonstrate LPA-stimulated migration in oral carcinoma cells through LPAR3, mediated further by PKC, which acts either in concert with or independently of EGFR transactivation (PMID:24928086)
  • These data indicated that the expression of LPA receptor 3 was increased in human triple-negative breast cancers and is associated with tumor metastatic ability. (PMID:25209561)
  • Suggest that LPA2 and LPA3 may function as a molecular switch and play opposing roles during megakaryopoiesis of K562 cells. (PMID:25463482)
  • Expression profiles reveal LPAR3 (lysophosphatidic acid receptor 3) as a mediator for mitotic phosphorylation-driven pancreatic cell motility and invasion. Together, this work identifies YAP as a novel regulator of pancreatic cancer cell motility, invasion and metastasis. (PMID:26440309)
  • The results indicate that LPA2 and LPA3 receptors play opposing roles during red blood cells differentiation. (PMID:27244685)
  • myeloma cells stimulate mesenchymal stem cells (MSCs to produce autotaxin, an indispensable enzyme for the biosynthesis of lysophosphatidic acid, and LPA receptor 1 (LPA1) and 3 (LPA3) transduce opposite signals to MSCs to determine the fate of MSCs. (PMID:27641212)
  • Using pharmacological activators and shRNA knockdown experiments, we demonstrate that activation of LPA3 inhibits megakaryopoiesis in human HSCs. In addition, pharmacological activation of LPA3 suppressed thrombopoiesis in zebrafish. (PMID:29239275)
  • Study also identifies that LPAR3 increases miR-122-5p expression, which occurs mechanistically through the SH3 domain and helps explain why miR-122-5p increases are detected in cancer patient serum. LPAR3 is partially responsible for the production and secretion of miR-122-5p, found in the serum of a wide variety of patients with cancer. (PMID:30266753)
  • LPAR3 was differently expressed in melanosis coli tissues.LPAR3 expression was related to cell apoptosis. (PMID:30559147)
  • Lysophosphatidic acid receptor LPA3 prevents oxidative stress and cellular senescence in Hutchinson-Gilford progeria syndrome. (PMID:31714004)
  • Effects of lysophosphatidic acid (LPA) receptor-2 (LPA2) and LPA3 on the regulation of chemoresistance to anticancer drug in lung cancer cells. (PMID:32006610)
  • The Agpat4/LPA axis in colorectal cancer cells regulates antitumor responses via p38/p65 signaling in macrophages. (PMID:32296017)
  • Roles of endothelial cells in the regulation of cell motility via lysophosphatidic acid receptor-2 (LPA2) and LPA3 in osteosarcoma cells. (PMID:33347862)
  • Transcriptional regulation of lysophosphatidic acid receptors 2 and 3 regulates myeloid commitment of hematopoietic stem cells. (PMID:33406026)
  • LPAR1 and aberrantly expressed LPAR3 differentially promote the migration and proliferation of malignant peripheral nerve sheath tumor cells. (PMID:36416236)
  • LPA3 Receptor Phosphorylation Sites: Roles in Signaling and Internalization. (PMID:38791546)
  • Lysophosphatidic Acid Receptor 3 (LPA3): Signaling and Phosphorylation Sites. (PMID:38928196)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriolpar3ENSDARG00000101814
mus_musculusLpar3ENSMUSG00000036832
rattus_norvegicusLpar3ENSRNOG00000064204

Paralogs (18): LPAR2 (ENSG00000064547), CNR1 (ENSG00000118432), MC3R (ENSG00000124089), S1PR4 (ENSG00000125910), GPR12 (ENSG00000132975), GPR6 (ENSG00000146360), GPR119 (ENSG00000147262), MC4R (ENSG00000166603), S1PR1 (ENSG00000170989), MC5R (ENSG00000176136), S1PR5 (ENSG00000180739), GPR3 (ENSG00000181773), MC2R (ENSG00000185231), CNR2 (ENSG00000188822), LPAR1 (ENSG00000198121), S1PR3 (ENSG00000213694), MC1R (ENSG00000258839), S1PR2 (ENSG00000267534)

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:1929469) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 8 distinct phenotype terms.

Mouse phenotype (MP)Records
abnormal systemic arterial blood pressure1
abnormal placenta morphology1
impaired embryo implantation1
decreased litter size1
long gestation period1
impaired spacing of implantation sites1
delayed embryo implantation1
decreased prostaglandin level1

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Macaca fascicularisQ95KH498.6%Diamond
Xenopus laevisQ9PU1698.4%Diamond
Ovis ariesP4662897.8%Diamond
Bos taurusQ2803197.8%Diamond
Sus scrofaQ684M386.7%Diamond
Takifugu rubripesQ9PUQ869.1%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
SSX2IPprotein-coding117178
MCOLN2protein-coding255231
LINC01555ncRNA439927
LINC01461ncRNA103695366
DNAI3protein-coding126820
MCOLN3protein-coding55283
MIR4423ncRNA100616481

Protein

Protein identifiers

Lysophosphatidic acid receptor 3 — Q9UBY5 (reviewed: Q9UBY5)

Alternative names: Lysophosphatidic acid receptor Edg-7

All UniProt accessions (1): Q9UBY5

UniProt curated annotations — full annotation on UniProt →

Function. Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities. May play a role in the development of ovarian cancer. Seems to be coupled to the G(i)/G(o) and G(q) families of heteromeric G proteins.

Subcellular location. Cell membrane.

Tissue specificity. Most abundantly expressed in prostate, testes, pancreas, and heart, with moderate levels in lung and ovary. No detectable expression in brain, placenta, liver, skeletal muscle, kidney, spleen, thymus, small intestine, colon, or peripheral blood leukocytes.

Similarity. Belongs to the G protein-coupled receptor 1 family.

RefSeq proteins (1): NP_036284* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000276GPCR_RhodpsnFamily
IPR004065LPA_rcptFamily
IPR005385LPA_rcpt_EDG7Family
IPR017452GPCR_Rhodpsn_7TMDomain

Pfam: PF00001

UniProt features (20 total): topological domain 8, transmembrane region 7, glycosylation site 2, chain 1, lipid moiety-binding region 1, sequence variant 1

Structure

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9UBY5-F181.630.47

Human Protein Atlas

Protein class: G-protein coupled receptors, GPCRs excl olfactory receptors, Lysolipids receptors, Predicted membrane proteins, GPCRHMM predicted membrane proteins

Protein evidence: Evidence at protein level

Subcellular location (HPA, imaging): plasma membrane; primary cilium

Antibody reliability (HPA): IF supported

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (1)

TypePositions
S-palmitoyl cysteine309

Glycosylation sites (2)

TypePositions
N-linked (glcnac…) asparagine15, 172

Function

Pathways and Gene Ontology

Reactome pathways

3 curated (TAS) of 8; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

8 pathways:

IDPathwayEvidence
R-HSA-418594G alpha (i) signalling eventscurated
R-HSA-416476G alpha (q) signalling eventscurated
R-HSA-419408Lysosphingolipid and LPA receptorscurated
R-HSA-373076Class A/1 (Rhodopsin-like receptors)—
R-HSA-388396GPCR downstream signalling—
R-HSA-500792GPCR ligand binding—
R-HSA-162582Signal Transduction—
R-HSA-372790Signaling by GPCR—

MSigDB gene sets: 163 (showing top): GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_UP, GOBP_POSITIVE_REGULATION_OF_CALCIUM_ION_TRANSPORT, GOBP_REGULATION_OF_COLLATERAL_SPROUTING, GOBP_REGULATION_OF_DEVELOPMENTAL_GROWTH, GOBP_GROWTH, GOBP_POSITIVE_REGULATION_OF_MAPK_CASCADE, GOBP_NEUROGENESIS, GOBP_REGULATION_OF_NERVOUS_SYSTEM_DEVELOPMENT, GOBP_POSITIVE_REGULATION_OF_NERVOUS_SYSTEM_DEVELOPMENT, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_CELL_CELL_SIGNALING, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_SIZE, GOBP_REGULATION_OF_CELL_PROJECTION_ORGANIZATION

GO Biological Process (8): G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (GO:0007187), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), positive regulation of cytosolic calcium ion concentration (GO:0007204), chemical synaptic transmission (GO:0007268), gene expression (GO:0010467), positive regulation of calcium ion transport (GO:0051928), signal transduction (GO:0007165), G protein-coupled receptor signaling pathway (GO:0007186)

GO Molecular Function (6): G-protein alpha-subunit binding (GO:0001965), G protein-coupled receptor activity (GO:0004930), phospholipid binding (GO:0005543), lipid binding (GO:0008289), lysophosphatidic acid receptor activity (GO:0070915), protein binding (GO:0005515)

GO Cellular Component (5): cytoplasm (GO:0005737), plasma membrane (GO:0005886), axon (GO:0030424), synapse (GO:0045202), membrane (GO:0016020)

Reactome top-level categories

5 top-level categories:

CategoryPathways
GPCR downstream signalling2
Signaling by GPCR2
Class A/1 (Rhodopsin-like receptors)1
Signal Transduction1
GPCR ligand binding1

GO top-level categories

28 GO namespaces:

CategoryTerms
G protein-coupled receptor signaling pathway2
binding2
cellular anatomical structure2
adenylate cyclase-modulating G protein-coupled receptor signaling pathway1
adenylate cyclase activator activity1
regulation of biological quality1
anterograde trans-synaptic signaling1
macromolecule biosynthetic process1
calcium ion transport1
positive regulation of monoatomic ion transport1
regulation of calcium ion transport1
cell communication1
cellular process1
signaling1
regulation of cellular process1
cellular response to stimulus1
G protein-coupled receptor activity1
signal transduction1
protein binding1
transmembrane signaling receptor activity1
lipid binding1
lysophosphatidic acid binding1
bioactive lipid receptor activity1
intracellular anatomical structure1
membrane1
cell periphery1
neuron projection1
cell junction1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 1 of 19 annotations. The rest are phylogenetic / computational / electronic (IEA).

1 experimentally-supported GO terms:

GO termNSEvidence
plasma membraneCCdirect assay

Protein interactions and networks

STRING

showing 15 of 652 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
LPAR3LPAR6P43657934
LPAR3LIPHQ8WWY8883
LPAR3LPAR5Q9H1C0882
LPAR3LPAR4Q99677881
LPAR3ENPP2Q13822767
LPAR3POU2F3Q9UKI9697
LPAR3GDPD1Q8N9F7654
LPAR3PLA1AQ53H76635
LPAR3GDPD3Q7L5L3629
LPAR3GPR87Q9BY21623
LPAR3LIPGQ9Y5X9612
LPAR3RPA3P35244601
LPAR3PTGS2P35354585
LPAR3P2RY10O00398540
LPAR3PLA2G4AP47712536

IntAct

Human interaction partners of LPAR3 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

showing 30 of 53 partners by confidence:

PartnerInteraction typeMIscoreRecords
CD74physical association0.6004
CREB3L1physical association0.5605
RETREG3physical association0.5605
AQP6physical association0.5603
ARL13Bphysical association0.5603
ASZ1physical association0.5603
BCL2L13physical association0.5603
C16orf54physical association0.5603
CD53physical association0.5603
CD79Aphysical association0.5603
CLDN2physical association0.5603
CLDN7physical association0.5603
CLDN9physical association0.5603
CLEC12Bphysical association0.5603
CPLX4physical association0.5603
CYB561physical association0.5603
CYBRD1physical association0.5603
EDAphysical association0.5603
ERGIC3physical association0.5603
FAM209Aphysical association0.5603
FFAR2physical association0.5603
FNDC9physical association0.5603
GJB5physical association0.5603
GORABphysical association0.5603
GPX8physical association0.5603
JAGN1physical association0.5603
KCNC1physical association0.5603
KCNJ6physical association0.5603
LEPROTL1physical association0.5603
LHFPL5physical association0.5603

BioGRID (67 interactions; top human partners by supporting records): APP (Reconstituted Complex), AQP6 (Two-hybrid), ARL13B (Two-hybrid), ASZ1 (Two-hybrid), BCL2L13 (Two-hybrid), C16orf54 (Two-hybrid), CD53 (Two-hybrid), CD74 (Two-hybrid), CD79A (Two-hybrid), CDC123 (Affinity Capture-MS), CHRNA4 (Affinity Capture-MS), CLDN2 (Two-hybrid), CLDN7 (Two-hybrid), CLDN9 (Two-hybrid), CLEC12B (Two-hybrid)

SIGNOR signaling

showing 15 of 19 signaling interactions:

AEffectBMechanism
LPAR3up-regulatesGNA12binding
LPAR3up-regulatesGNA13binding
“lysophosphatidic acids”up-regulatesLPAR3“chemical activation”
“3-[({4-[4-({[1-(2-chlorophenyl)ethoxy]carbonyl}amino)-3-methyl-1,2-oxazol-5-yl]phenyl}methyl)sulfanyl]propanoic acid”down-regulatesLPAR3“chemical inhibition”
LPAR3“up-regulates activity”GNALbinding
LPAR3“up-regulates activity”GNAI1binding
LPAR3“up-regulates activity”GNAI3binding
LPAR3“up-regulates activity”GNAO1binding
LPAR3“up-regulates activity”GNAZbinding
LPAR3“up-regulates activity”GNAQbinding
LPAR3“up-regulates activity”GNA14binding
LPAR3“up-regulates activity”GNA15binding
“lysophosphatidic acid”“up-regulates activity”LPAR3“chemical activation”
LPAR3up-regulatesGNAI1binding
LPAR3up-regulatesGNAQbinding

Protein complexes (CORUM) (8)

Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).

8 complexes by size:

ComplexSubunitsMembers
LPAR1-LPAR3 complex2LPAR1, LPAR3
LPAR2-LPAR3 complex2LPAR2, LPAR3
★ LPAR3-S1PR1 complex2LPAR3, S1PR1
LPAR3-S1PR2 complex2LPAR3, S1PR2
★ LPAR3-S1PR3 complex2LPAR3, S1PR3
GPR4-LPAR3 complex2GPR4, LPAR3
GPR68-LPAR3 complex2GPR68, LPAR3
Lysophosphatidic acid receptor 31LPAR3

Ligand–receptor pairs (CellPhoneDB) (1)

Curated ligand–receptor partners (cell-cell communication), distinct from the protein–protein interactions above.

1 ligand–receptor pairs:

PartnerThis gene’s roleSignaling class
ADGRE5ligandSignaling by Lysophosphatidic acid receptor

Disease & clinical

Genetic variants

Variant evidence for LPAR3: 69 ClinVar records (0 pathogenic / likely pathogenic); 10 GWAS associations.

ClinVar

69 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance61
Likely benign0
Benign3

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 27 predictions of 434):

Position(s)EffectΔscoreSites
1:84814172–84814173acceptor_loss1.00002
1:84893014–84893015donor_loss1.00005
1:84814172–84814173acceptor_loss0.99004
1:84859232donor_gain0.9900
1:84814176acceptor_gain0.9800
1:84837424donor_gain0.9800
1:84865383–84865384donor_loss0.98006
1:84866026donor_gain0.9700
1:84866139–84866140acceptor_loss0.96005
1:84866139acceptor_loss0.9500

AlphaMissense

1,053 missense substitutions predicted likely pathogenic (of 2,349 scored), across 243 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
M20290.8870.994
M30090.8450.967
D7680.9980.999
N4880.9870.998
N28980.9860.998
F24880.9810.999
D26280.9780.986
D29780.9740.991
N28580.9650.998
D11080.9600.982
F6180.9380.997
F19980.9350.983
H6280.9110.986
F6580.8770.987
N5880.7800.951
C16970.9930.998
C17670.9930.997
W25270.9930.999
W15370.9860.999
W16770.9850.998

HPA cancer prognostics

RNA cancer specificity: Cancer enhanced (Ovary Serous Cystadenocarcinoma)

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

2 prognostic cancer types:

CancerPrognosticp-value
Ovary Serous Cystadenocarcinoma (TCGA)favorable0.000489
Bladder Urothelial Carcinoma (TCGA)unfavorable0.000911

Disease associations

OMIM: gene MIM:605106 | disease phenotypes:

GWAS associations

10 associations:

StudyTraitp-value
GCST006979_764Heel bone mineral density1e-12
GCST006979_763Heel bone mineral density3e-11
GCST004490_13Cerebrospinal fluid t-tau:AB1-42 ratio2e-8
GCST012490_435Femur bone mineral density x serum urate levels interaction3e-8
GCST000244_4Type 1 diabetes2e-6
GCST001713_22Dental caries2e-6
GCST001726_4Lipoprotein-associated phospholipase A2 activity change in response to statin therapy4e-6
GCST002726_32Glucose homeostasis traits6e-6
GCST003254_10Urinary albumin-to-creatinine ratio in non-diabetics7e-6
GCST001511_10Economic and political preferences (time)9e-6

EFO canonical traits (from GWAS)

7 canonical traits:

EFO IDTrait name
EFO:0004827economic and social preference
EFO:0004746lipoprotein-associated phospholipase A(2) measurement
EFO:0004471insulin sensitivity measurement
EFO:0007778urinary albumin to creatinine ratio
EFO:0007708t-tau:beta-amyloid 1-42 ratio measurement
EFO:0009270heel bone mineral density
EFO:0004531urate measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL3250 (SINGLE PROTEIN), CHEMBL3885601 (PROTEIN FAMILY)

PharmGKB: 1 entry (CPIC guideline: no)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — Lysophospholipid (LPA) receptors

Most potent curated ligand interactions (21 total), top 21:

LigandActionAffinityParameter
T13Agonist9.3pEC50
α-fluoromethylenephosphonateAgonist9.3pEC50
2-oleoyl-LPAAgonist8.0pEC50
dodecyl-thiophosphateAntagonist7.89pKi
CpYAgonist7.7pEC50
alkyl OMPTAgonist7.21pEC50
CpXAgonist7.2pEC50
OMPTAgonist7.17pEC50
dodecylphosphateAntagonist7.05pKi
dioctanoylglycerol pyrophosphateAgonist6.97pIC50
farnesyl diphosphateAntagonist6.81pKd
VPC32183Antagonist6.76pIC50
LPAAgonist6.69pKd
Ki16425Antagonist6.44pKi
VPC12249Antagonist6.37pIC50
farnesyl monophosphateAntagonist6.3pIC50
oleoyl-thiophosphatePartial agonist6.26pEC50
H2L5186303Antagonist5.91pIC50
AM966Antagonist5.7pIC50
compound 12 [PMID: 19800804]Antagonist5.52pIC50
NAEPAAgonist5.3pEC50

Binding affinities (BindingDB)

146 measured of 201 human assays (201 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
CHEMBL4871014IC501 nM
CHEMBL3975893IC503.5 nM
1-[4-[6-[5-[[6-(cyclopropoxy)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-5-fluoro-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC508.61 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[[6-(cyclopropoxy)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic AcidIC509.86 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
CHEMBL2335047EC5010 nM
CHEMBL2335050EC5011 nM
1-[4-[5-fluoro-6-[5-[(6-isopropoxypyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5011.1 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
CHEMBL2335051EC5012 nM
(R)—N-(1-(1-(1H-indazol-5-yl)-3-methyl-2,4-dioxo-1,3,8-triazaspiro[4.5]decan-8-yl)-3-methyl-1-oxobutan-2-yl)-2-fluoro-5-(trifluoromethyl)benzamideIC5014 nM
CHEMBL357053EC5015 nM
1-[4-[5-fluoro-6-[5-[[6-(1-fluoro-1-methyl-ethyl)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid HydrochlorideIC5016.7 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[4-[1-methyl-5-[[(1R)-1-[3-(trifluoromethyl)phenyl]ethoxy]carbonylamino]triazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acidIC5017 nMUS-9321738: N-alkyltriazole compounds as LPAR antagonists
1-[4-[6-[5-[[6-(cyclobutoxy)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic AcidIC5017.2 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[2-cyano-4-[6-[5-[[6-(cyclopropoxy)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5017.9 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[3-fluoro-4-[1-methyl-5-[[(1R)-1-phenylethoxy]carbonylamino]triazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acidIC5018 nMUS-9321738: N-alkyltriazole compounds as LPAR antagonists
1-[4-[4-[1-methyl-5-[[(1R)-1-phenylethoxy]carbonylamino]triazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acidIC5018 nMUS-9321738: N-alkyltriazole compounds as LPAR antagonists
[(1R)-1-phenylethyl] N-[3-methyl-5-[4-[4-[1-(methylsulfonylcarbamoyl)cyclopropyl]phenyl]phenyl]triazol-4-yl]carbamateIC5018.8 nMUS-9321738: N-alkyltriazole compounds as LPAR antagonists
CHEMBL1222042IC5020 nM
CHEMBL2182063IC5020 nM
1-[4-[6-[1-methyl-5-[(6-propan-2-ylpyrazin-2-yl)amino]pyrazol-4-yl]-3-pyridinyl]phenyl]cyclopropane-1-carboxylic acidIC5020.6 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[[6-(cyclopropoxy)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]-2-(trifluoromethyl)phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5022 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[4-[5-[(6-isopropylpyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]phenyl]phenyl]cyclopropanecarboxylic AcidIC5023.6 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
2-(2-(2-aminoacetamido)-3-(2,4-dinitrophenylthio)propanamido)pentanedioic acidIC5024 nM
[(1R)-1-[3-(trifluoromethyl)phenyl]ethyl] N-[3-methyl-5-[4-[4-[1-(methylsulfonylcarbamoyl)cyclopropyl]phenyl]phenyl]triazol-4-yl]carbamateIC5024 nMUS-9321738: N-alkyltriazole compounds as LPAR antagonists
CHEMBL2182064IC5024 nM
CHEMBL153043EC5024 nM
1-[4-[2-[5-[(6-isopropylpyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]pyrimidin-5-yl]phenyl]cyclopropanecarboxylic acidIC5024 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[[6-(1,1-difluoroethyl)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5024.4 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
CHEMBL2335049EC5026 nM
1-[4-[6-[5-[[6-(3,3-difluorocyclobutoxy)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic AcidIC5026.9 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[(6-isopropoxypyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]-2-methyl-phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5027.1 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
3-[4’-(3-Carboxy-acryloylamino)-biphenyl-4-ylcarbamoyl]-acrylic acidIC5028.3 nM
1-[3-cyano-4-[6-[5-[(6-isopropylpyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5029.3 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[(6-isopropoxypyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5029.3 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[3-methyl-4-[6-[1-methyl-5-[(6-propan-2-ylpyrazin-2-yl)amino]pyrazol-4-yl]-3-pyridinyl]phenyl]cyclopropane-1-carboxylic acidIC5030.9 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
CHEMBL2335048EC5031 nM
CHEMBL2182061IC5035 nM
1-[4-[6-[1-methyl-5-[[6-(trifluoromethyl)pyrazin-2-yl]amino]pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic AcidIC5036.3 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
(3-Octadec-9-enoylamino-propionyl)-phosphonothioic acidEC5040 nM
CHEMBL2182023IC5041 nM
1-[3-(cyanomethyl)-4-[6-[5-[(6-isopropylpyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5042.9 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[[6-(1-fluoro-1-methyl-ethyl)pyrazin-2-yl]amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5044 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[6-[5-[(6-isopropylpyrazin-2-yl)amino]-1-methyl-pyrazol-4-yl]-3-pyridyl]-3-(methoxymethyl)phenyl]cyclopropanecarboxylic Acid; HydrochlorideIC5045.8 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[4-[1-methyl-5-[1-[3-(trifluoromethyl)phenyl]ethoxycarbonylamino]triazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acidIC5046 nMUS-9321738: N-alkyltriazole compounds as LPAR antagonists
1-[6-[6-[1-methyl-5-[(6-propan-2-ylpyrazin-2-yl)amino]pyrazol-4-yl]-3-pyridinyl]-3-pyridinyl]cyclopropane-1-carboxylic acidIC5048 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
CHEMBL404575IC5050 nM
1-[4-[4-[5-[(6-chloropyrazin-2-yl)amino]-1-methylpyrazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acidIC5052.9 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
1-[4-[4-[1-methyl-5-[[6-(2-methylpropyl)pyrazin-2-yl]amino]pyrazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acidIC5054.7 nMUS-11365185: Lysophosphatidic acid receptor 1 (LPAR1) inhibitor compounds
CHEMBL2182065IC5057 nM
Phosphoric acid mono-[2-((Z)-octadec-9-enoylamino)-ethyl] esterIC5060 nM

ChEMBL bioactivities

209 potent at pChembl≥5 of 220 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.69EC500.2042nMCHEMBL2335051
9.68EC500.21nMCHEMBL2335051
9.65EC500.2239nMCHEMBL2335052
9.64EC500.23nMCHEMBL2335052
9.57EC500.27nMCHEMBL357053
9.57EC500.2692nMCHEMBL357053
9.56EC500.2754nMCHEMBL2017139
9.55EC500.28nMCHEMBL2017139
9.44EC500.36nMCHEMBL2335049
9.44EC500.3631nMCHEMBL2335049
9.43EC500.37nMCHEMBL2335047
9.43EC500.3715nMCHEMBL2335047
9.41EC500.39nMCHEMBL2335050
9.40EC500.3981nMCHEMBL2335050
9.36EC500.44nMCHEMBL153043
9.35EC500.4467nMCHEMBL153043
8.97EC501.08nMCHEMBL2335048
8.97EC501.072nMCHEMBL2335048
8.52EC503nMCHEMBL201482
8.30Ki5nMCHEMBL202361
7.96IC5011nMCHEMBL202361
7.85Ki14nMTHIOPHOSPHORIC ACID DODECYL ESTER
7.85Ki14nMCHEMBL190484
7.85Ki14nMCHEMBL187402
7.62IC5024nMCHEMBL2372286
7.57Ki27nMCHEMBL190349
7.57IC5027nMCHEMBL190484
7.55IC5028nMTHIOPHOSPHORIC ACID DODECYL ESTER
7.55IC5028nMCHEMBL187402
7.52IC5030nMCHEMBL485119
7.50IC5032nMCHEMBL190349
7.45IC5035.6nMCHEMBL91058
7.41Ki39nMCHEMBL183143
7.41Ki39nMCHEMBL362053
7.41Ki39nMCHEMBL202185
7.40Ki40nMCHEMBL188591
7.40IC5040nMCHEMBL272087
7.32Ki48nMCHEMBL183221
7.32Ki48nMCHEMBL3218459
7.31Ki49nMTHIOPHOSPHORIC ACID DECYL ESTER
7.30Ki50nMCHEMBL203986
7.30IC5049.6nMCHEMBL5907737
7.24Ki58nMCHEMBL190430
7.21EC5062nMCHEMBL3621961
7.19IC5065nMCHEMBL2182050
7.18IC5065.7nMCHEMBL2182050
7.17Ki67nMCHEMBL427017
7.12Ki76nMTHIOPHOSPHORIC ACID TETRADECYL ESTER
7.11EC5077nMLYSOPHOSPHATIDIC ACID
7.11EC5077.62nMLYSOPHOSPHATIDIC ACID

PubChem BioAssay actives

173 with measured affinity, of 471 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
dihydroxy-(2-methoxy-3-octadecoxypropoxy)-sulfanylidene-lambda5-phosphane733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0002uM
sodium [1-[hydroxy(oxido)phosphinothioyl]oxy-3-methoxypropan-2-yl] octadecanoate733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0002uM
[(2S)-3-dihydroxyphosphinothioyloxy-2-methoxypropyl] octadecanoate733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0003uM
(3-dihydroxyphosphinothioyloxy-2-methoxypropyl) octadecanoate733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0003uM
[(2R)-3-dihydroxyphosphinothioyloxy-2-methoxypropyl] octadecanoate733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0004uM
sodium (2-hexadecoxy-3-methoxypropoxy)-hydroxy-oxido-sulfanylidene-lambda5-phosphane733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0004uM
sodium (2-heptadecoxy-3-methoxypropoxy)-hydroxy-oxido-sulfanylidene-lambda5-phosphane733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0004uM
dihydroxy-[(2S)-2-methoxy-3-octadecoxypropoxy]-sulfanylidene-lambda5-phosphane733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0004uM
dihydroxy-[(2R)-2-methoxy-3-octadecoxypropoxy]-sulfanylidene-lambda5-phosphane733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0011uM
[(2R)-2,3-dioctoxypropoxy]-dihydroxy-sulfanylidene-lambda5-phosphane260482: Activity at LPA3 receptor transfected RH7777 cellsec500.0030uM
[(2R)-3-dihydroxyphosphinothioyloxy-2-octanoyloxypropyl] octanoate260482: Activity at LPA3 receptor transfected RH7777 cellski0.0050uM
dodecoxy-dihydroxy-sulfanylidene-lambda5-phosphane239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0140uM
[(E)-dodec-9-enoxy]-dihydroxy-sulfanylidene-lambda5-phosphane239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0140uM
dihydroxy-sulfanylidene-[(E)-tetradec-9-enoxy]-lambda5-phosphane239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0140uM
(2S)-2-[[(2R)-2-[(2-aminoacetyl)amino]-3-(2,4-dinitrophenyl)sulfanylpropanoyl]amino]pentanedioic acid408399: Antagonist activity at LPA3 receptor expressed in rat RH7777 cells assessed as inhibition of LPA-induced intracellular calcium concentrationic500.0240uM
[(E)-dodec-9-enyl] dihydrogen phosphate239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0270uM
2,6-bis[[(E)-3-carboxyprop-2-enoyl]amino]benzoic acid408399: Antagonist activity at LPA3 receptor expressed in rat RH7777 cells assessed as inhibition of LPA-induced intracellular calcium concentrationic500.0300uM
[(2R)-3-[4-[(3-methoxyphenyl)methoxy]phenyl]-2-[[(Z)-octadec-9-enoyl]amino]propyl] dihydrogen phosphate102985: In vitro antagonism of LPA-evoked [35S]GTP-gamma-S binding to lysophosphatidic acid receptor 3 in HEK293T cell linesic500.0356uM
[(2R)-2-octanoyloxy-3-phosphonooxypropyl] octanoate260482: Activity at LPA3 receptor transfected RH7777 cellski0.0390uM
[(2R)-3-[4-[(4-ethoxy-2-pyridinyl)methoxy]phenyl]-2-[[(Z)-octadec-9-enoyl]amino]propyl] dihydrogen phosphate240661: Binding affinity towards Lysophosphatidic acid 3 (LPA3) receptorki0.0390uM
[(2R)-3-[4-[(4-methoxy-3,5-dimethyl-2-pyridinyl)methoxy]phenyl]-2-[[(Z)-octadec-9-enoyl]amino]propyl] dihydrogen phosphate240661: Binding affinity towards Lysophosphatidic acid 3 (LPA3) receptorki0.0390uM
[(E)-tetradec-11-enyl] dihydrogen phosphate239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0400uM
2-[4-[[(3,5-dimethoxybenzoyl)-(3-phenylpropyl)amino]methyl]phenoxy]benzoic acid320519: Antagonist activity at LPA3 expressed in RH7777 cells with Gi4-protein and aequorin by calcium mobilization assayic500.0400uM
[(2R)-2-[[(Z)-octadec-9-enoyl]amino]-3-[4-[[4-(2,2,2-trifluoroethoxy)-2-pyridinyl]methoxy]phenyl]propyl] dihydrogen phosphate240661: Binding affinity towards Lysophosphatidic acid 3 (LPA3) receptorki0.0480uM
[(2R)-2-(octadecanoylamino)-3-[4-[[4-(2,2,2-trifluoroethoxy)-2-pyridinyl]methoxy]phenyl]propyl] dihydrogen phosphate1118228: Competitive antagonist activity at N-terminal 3XHA-tagged human LPA3 receptor overexpressed in CHO cells assessed as inhibition of LPA-induced [35S]GTPgammaS binding by liquid scintillation countingki0.0480uM
decoxy-dihydroxy-sulfanylidene-lambda5-phosphane239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0490uM
sodium 1-[4-[4-[3-[1-(2-chlorophenyl)ethoxycarbonylamino]furo[2,3-c]pyridin-2-yl]phenyl]phenyl]cyclopropane-1-carboxylate1938508: Antagonist activity at human LPA3 receptorec500.0500uM
sodium 1-[4-[4-[3-(1-phenylethoxycarbonylamino)furo[2,3-c]pyridin-2-yl]phenyl]phenyl]cyclopropane-1-carboxylate1938508: Antagonist activity at human LPA3 receptorec500.0500uM
[(2S)-2,3-dioctoxypropyl] dihydrogen phosphate260482: Activity at LPA3 receptor transfected RH7777 cellski0.0500uM
2-[7-[4-[4-[1-(2-chlorophenyl)ethoxycarbonylamino]-3-methyl-1,2-oxazol-5-yl]phenyl]-2,3-dihydro-1H-inden-4-yl]acetic acid1938508: Antagonist activity at human LPA3 receptorec500.0500uM
[(E)-tetradec-9-enyl] dihydrogen phosphate239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0580uM
[(1R)-1-[3-(trifluoromethyl)phenyl]ethyl] N-[3-methyl-5-[4-[4-[1-(methylsulfonylcarbamoyl)cyclopropyl]phenyl]phenyl]triazol-4-yl]carbamate706181: Antagonist activity at human recombinant LPA3 expressed in chem-1 cells assessed as inhibition of LPA-induced intracellular calcium mobilization incubated for 30 mins prior to LPA-challenge measured over 100 secs by FLIPR assayic500.0650uM
[(2S)-2,3-dioctoxypropoxy]-dihydroxy-sulfanylidene-lambda5-phosphane260482: Activity at LPA3 receptor transfected RH7777 cellski0.0670uM
dihydroxy-sulfanylidene-tetradecoxy-lambda5-phosphane239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.0760uM
[(2R)-2-hydroxy-3-phosphonooxypropyl] (Z)-octadec-9-enoate733690: Agonist activity at human LPA3 receptor transfected in HEK293 cells after 1 hr by TGFalpha shedding assayec500.0770uM
[(2R)-3-[4-[(4-methoxy-2-pyridinyl)methoxy]phenyl]-2-[[(Z)-octadec-9-enoyl]amino]propyl] dihydrogen phosphate240661: Binding affinity towards Lysophosphatidic acid 3 (LPA3) receptorki0.1020uM
[(2S)-3-dihydroxyphosphinothioyloxy-2-octanoyloxypropyl] octanoate260482: Activity at LPA3 receptor transfected RH7777 cellsec500.1150uM
N-[(2S)-3-dihydroxyphosphinothioyloxy-1-(octylamino)-1-oxopropan-2-yl]octanamide260482: Activity at LPA3 receptor transfected RH7777 cellski0.1170uM
N-[(2R)-3-dihydroxyphosphinothioyloxy-1-(octylamino)-1-oxopropan-2-yl]octanamide260482: Activity at LPA3 receptor transfected RH7777 cellski0.1180uM
[(2S)-2-octanoyloxy-3-phosphonooxypropyl] octanoate260482: Activity at LPA3 receptor transfected RH7777 cellski0.1190uM
decyl dihydrogen phosphate239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.1210uM
dodecyl dihydrogen phosphate239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.1210uM
dec-9-enoxy-dihydroxy-sulfanylidene-lambda5-phosphane239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.1280uM
1-[4-[4-[1-methyl-5-[[(1R)-1-[3-(trifluoromethyl)phenyl]ethoxy]carbonylamino]triazol-4-yl]phenyl]phenyl]cyclopropane-1-carboxylic acid706181: Antagonist activity at human recombinant LPA3 expressed in chem-1 cells assessed as inhibition of LPA-induced intracellular calcium mobilization incubated for 30 mins prior to LPA-challenge measured over 100 secs by FLIPR assayic500.1320uM
[(2R)-2-heptanoyloxy-3-phosphonooxypropyl] heptanoate408407: Inhibition of LPA3 receptoric500.1430uM
3-[[4-[4-[1-(2-chlorophenyl)ethoxycarbonylamino]-3-methyl-1,2-oxazol-5-yl]phenyl]methylsulfanyl]propanoic acid239112: Binding affinity for Lysophosphatidic acid receptor 3 expressed in RH7777 rat hepatoma cellski0.1480uM
[(3R)-4-[4-[(4-methoxy-3,5-dimethyl-2-pyridinyl)methoxy]phenyl]-3-[[(Z)-octadec-9-enoyl]amino]butyl]phosphonic acid240661: Binding affinity towards Lysophosphatidic acid 3 (LPA3) receptorki0.1500uM
[(2R)-2,3-dioctoxypropyl] dihydrogen phosphate260482: Activity at LPA3 receptor transfected RH7777 cellsec500.1640uM
[(2R)-2-[[(Z)-octadec-9-enoyl]amino]-3-[4-(pyridin-2-ylmethoxy)phenyl]propyl] dihydrogen phosphate102985: In vitro antagonism of LPA-evoked [35S]GTP-gamma-S binding to lysophosphatidic acid receptor 3 in HEK293T cell linesic500.1750uM
[(2R)-3-dihydroxyphosphinothioyloxy-2-heptanoyloxypropyl] heptanoate408407: Inhibition of LPA3 receptoric500.1840uM

CTD chemical–gene interactions

37 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, increases expression6
trichostatin Aaffects cotreatment, increases expression3
sodium arseniteaffects methylation, increases expression3
bisphenol Adecreases expression, increases expression2
mercuric bromidedecreases expression, affects cotreatment2
entinostatincreases expression, affects cotreatment2
Benzo(a)pyreneincreases methylation, affects methylation2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Tobacco Smoke Pollutiondecreases expression2
Tretinoindecreases expression2
Aflatoxin B1decreases expression, decreases methylation2
FR900359decreases phosphorylation1
quercitrinincreases expression1
11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acidaffects methylation, increases abundance1
potassium chromate(VI)increases expression1
nickel sulfateincreases expression1
lysophosphatidic acidaffects binding, decreases reaction, increases activity1
CGP 52608affects binding, increases reaction1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression, decreases expression1
dorsomorphinaffects cotreatment, increases expression, decreases expression1
Sunitinibdecreases expression1
Vorinostatincreases expression1
Acetaminophendecreases expression1
Glyphosateincreases expression, decreases expression1
Arsenicaffects methylation1
Cadmiumdecreases expression, increases abundance1
Cannabinoidsaffects methylation, increases abundance1
Bucladesineaffects cotreatment, increases expression1
Estradiolincreases expression, affects cotreatment1
Progesteroneincreases expression1

ChEMBL screening assays

74 unique, capped per target: 56 functional, 18 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1064668FunctionalAgonist activity at LPA3 receptor expressed in rat RH7777 cells assessed as effect on intracellular calcium response at 10 uMStructure-based drug design identifies novel LPA3 antagonists. — *Bioorg Med Chem*
CHEMBL1064670BindingBinding affinity to LPA3Structure-based drug design identifies novel LPA3 antagonists. — *Bioorg Med Chem*

Cellosaurus cell lines

8 cell lines: 4 cancer cell line, 3 transformed cell line, 1 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B3A9Abcam HEK293T LPAR3 KOTransformed cell lineFemale
CVCL_D8PDUbigene HCT 116 LPAR3 KOCancer cell lineMale
CVCL_D9IQUbigene HEK293 LPAR3 KOTransformed cell lineFemale
CVCL_KW98PathHunter CHO-K1 EDG7 beta-arrestinSpontaneously immortalized cell lineFemale
CVCL_LA25PathHunter U2OS EDG7 Activated GPCR InternalizationCancer cell lineFemale
CVCL_XA29GeneBLAzer EDG7-NFAT-bla HEK 293TTransformed cell lineFemale
CVCL_YK53U2OS LPAR3 HiTSeekerCancer cell lineFemale
CVCL_ZK32Tango EDG7-bla U2OSCancer cell lineFemale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for LPAR3 across ~30M SureChEMBL compounds — explore on Sugi Predict.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dental caries, type 1 diabetes mellitus