LPGAT1-AS1

Summary

LPGAT1-AS1 (LPGAT1 antisense RNA 1, HGNC:41221) is a long non-coding RNA gene on chromosome 1q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41221
Approved symbol	LPGAT1-AS1
Name	LPGAT1 antisense RNA 1
Location	1q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229258
Ensembl biotype	lncRNA
Entrez	102723727
RNAcentral	URS0000A76DB6 — lncRNA, 932 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000429499, ENST00000430623, ENST00000446560, ENST00000457272, ENST00000670360, ENST00000799847, ENST00000799848, ENST00000799849, ENST00000799850, ENST00000799851, ENST00000799852, ENST00000799853, ENST00000799854, ENST00000799855, ENST00000799856, ENST00000799857, ENST00000799858, ENST00000799859, ENST00000799860, ENST00000799861, ENST00000799862, ENST00000799863, ENST00000799864, ENST00000799865, ENST00000799866, ENST00000799867, ENST00000799868, ENST00000799869, ENST00000799870, ENST00000799871, ENST00000799872

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000429499 — 4 exons

Exon	Start	End
ENSE00001603957	211839464	211839533
ENSE00001612232	211839659	211839933
ENSE00001749385	211831245	211831412
ENSE00004188774	211829617	211829803

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 93.88.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0644 / max 15.7801, expressed in 16 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
8431	0.0548	14
8433	0.0049	3
8432	0.0048	3

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.88	gold quality
left testis	UBERON:0004533	87.32	gold quality
testis	UBERON:0000473	86.50	gold quality
right testis	UBERON:0004534	86.18	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.08	silver quality
bone marrow cell	CL:0002092	70.80	silver quality
skeletal muscle tissue	UBERON:0001134	70.74	gold quality
bone marrow	UBERON:0002371	65.74	silver quality
colonic epithelium	UBERON:0000397	64.99	silver quality
monocyte	CL:0000576	58.25	gold quality
myometrium	UBERON:0001296	58.18	silver quality
lymph node	UBERON:0000029	57.14	gold quality
gall bladder	UBERON:0002110	56.10	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.54	gold quality
blood	UBERON:0000178	55.49	gold quality
liver	UBERON:0002107	54.74	gold quality
multicellular organism	UBERON:0000468	54.00	gold quality
calcaneal tendon	UBERON:0003701	53.47	gold quality
superior frontal gyrus	UBERON:0002661	53.38	gold quality
islet of Langerhans	UBERON:0000006	51.11	gold quality
fundus of stomach	UBERON:0001160	50.69	gold quality
gastrocnemius	UBERON:0001388	50.65	gold quality
prefrontal cortex	UBERON:0000451	50.51	gold quality
right lobe of liver	UBERON:0001114	50.47	gold quality
vermiform appendix	UBERON:0001154	49.97	gold quality
left coronary artery	UBERON:0001626	49.38	gold quality
kidney	UBERON:0002113	48.68	gold quality
body of pancreas	UBERON:0001150	47.39	gold quality
adult mammalian kidney	UBERON:0000082	46.83	gold quality
adrenal tissue	UBERON:0018303	46.19	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.