LRBA
gene geneOn this page
Also known as BGLLAB300LBAuc.147
Summary
LRBA (LPS responsive beige-like anchor protein, HGNC:1742) is a protein-coding gene on chromosome 4q31.3, encoding Lipopolysaccharide-responsive and beige-like anchor protein (P50851). Involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.
The protein encoded by this gene is a member of the WDL-BEACH-WD (WBW) gene family. Its expression is induced in B cells and macrophages by bacterial lipopolysaccharides (LPS). The encoded protein associates with protein kinase A and may be involved in leading intracellular vesicles to activated receptor complexes, which aids in the secretion and/or membrane deposition of immune effector molecules. Defects in this gene are associated with the disorder common variable immunodeficiency-8 with autoimmunity. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 987 — RefSeq curated summary.
At a glance
- Gene–disease (curated): combined immunodeficiency due to LRBA deficiency (Definitive, ClinGen)
- GWAS associations: 11
- Clinical variants (ClinVar): 2,607 total — 125 pathogenic, 72 likely-pathogenic
- Phenotypes (HPO): 45
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_001364905
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1742 |
| Approved symbol | LRBA |
| Name | LPS responsive beige-like anchor protein |
| Location | 4q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | BGL, LAB300, LBA, uc.147 |
| Ensembl gene | ENSG00000198589 |
| Ensembl biotype | protein_coding |
| OMIM | 606453 |
| Entrez | 987 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 18 protein_coding, 4 protein_coding_CDS_not_defined, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000357115, ENST00000502839, ENST00000503716, ENST00000507224, ENST00000508396, ENST00000508606, ENST00000510157, ENST00000510413, ENST00000510841, ENST00000513021, ENST00000514435, ENST00000515096, ENST00000648626, ENST00000648823, ENST00000648878, ENST00000649874, ENST00000651035, ENST00000651695, ENST00000651943, ENST00000697127, ENST00000697128, ENST00000697129, ENST00000697130, ENST00000911749, ENST00000911750, ENST00000911751, ENST00000911752, ENST00000911753
RefSeq mRNA: 4 — MANE Select: NM_001364905
NM_001199282, NM_001364905, NM_001367550, NM_006726
CCDS: CCDS3773, CCDS58928, CCDS93649, CCDS93650
Canonical transcript exons
ENST00000651943 — 57 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000740094 | 150928516 | 150928616 |
| ENSE00000740095 | 150921198 | 150921293 |
| ENSE00000740096 | 150915608 | 150915727 |
| ENSE00000740097 | 150914195 | 150914341 |
| ENSE00000740098 | 150908660 | 150908857 |
| ENSE00000740099 | 150908334 | 150908467 |
| ENSE00000740100 | 150906297 | 150906405 |
| ENSE00000740101 | 150900049 | 150900217 |
| ENSE00000740104 | 150868182 | 150868305 |
| ENSE00000740106 | 150867671 | 150867863 |
| ENSE00000740109 | 150850724 | 150850902 |
| ENSE00000821053 | 150870525 | 150870606 |
| ENSE00000821054 | 150871345 | 150871453 |
| ENSE00000821057 | 150872663 | 150872755 |
| ENSE00000821058 | 150893052 | 150893149 |
| ENSE00000821060 | 150897739 | 150897818 |
| ENSE00000821061 | 150905838 | 150905990 |
| ENSE00000821062 | 150916401 | 150916527 |
| ENSE00001081815 | 150321191 | 150321368 |
| ENSE00001081818 | 150798081 | 150798142 |
| ENSE00001081820 | 150828180 | 150828621 |
| ENSE00001081822 | 150844658 | 150844779 |
| ENSE00001081823 | 150808320 | 150808398 |
| ENSE00001081824 | 150831817 | 150831976 |
| ENSE00001081825 | 150848818 | 150848998 |
| ENSE00001081826 | 150806271 | 150806404 |
| ENSE00001081827 | 150849422 | 150849575 |
| ENSE00001081828 | 150844100 | 150844207 |
| ENSE00001081829 | 150817124 | 150817257 |
| ENSE00001081830 | 150735258 | 150735366 |
| ENSE00001200926 | 150851885 | 150852943 |
| ENSE00001250081 | 150683551 | 150683717 |
| ENSE00001250470 | 150896394 | 150896456 |
| ENSE00001250476 | 150928834 | 150929065 |
| ENSE00001428255 | 151014427 | 151014861 |
| ENSE00001619686 | 150761783 | 150761847 |
| ENSE00001777660 | 150916617 | 150916738 |
| ENSE00003487176 | 150310229 | 150310384 |
| ENSE00003487821 | 150467673 | 150467785 |
| ENSE00003576042 | 150277853 | 150278004 |
| ENSE00003583036 | 150435589 | 150435708 |
| ENSE00003591436 | 150436724 | 150436864 |
| ENSE00003613524 | 150315561 | 150315623 |
| ENSE00003613781 | 150588048 | 150588184 |
| ENSE00003621548 | 150487732 | 150487834 |
| ENSE00003623119 | 150285933 | 150286034 |
| ENSE00003626043 | 150325809 | 150325898 |
| ENSE00003637749 | 150490918 | 150491035 |
| ENSE00003661993 | 150471624 | 150471739 |
| ENSE00003670996 | 150349992 | 150350159 |
| ENSE00003683208 | 150590713 | 150590859 |
| ENSE00003683395 | 150415438 | 150415590 |
| ENSE00003688095 | 150599007 | 150599131 |
| ENSE00003692138 | 150282450 | 150282646 |
| ENSE00003692871 | 150302625 | 150302792 |
| ENSE00003900801 | 150264435 | 150265812 |
| ENSE00003902903 | 151015202 | 151015284 |
Expression profiles
Bgee: expression breadth ubiquitous, 274 present calls, max score 95.01.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.3310 / max 403.3496, expressed in 1806 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 54335 | 11.1964 | 1776 |
| 54334 | 7.3897 | 1419 |
| 54333 | 2.5744 | 923 |
| 54336 | 0.4726 | 277 |
| 54332 | 0.2125 | 109 |
| 54307 | 0.1538 | 84 |
| 54308 | 0.1273 | 78 |
| 54310 | 0.0843 | 50 |
| 54309 | 0.0723 | 41 |
| 54306 | 0.0476 | 21 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| upper leg skin | UBERON:0004262 | 95.01 | gold quality |
| bronchial epithelial cell | CL:0002328 | 94.99 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 93.59 | gold quality |
| colonic epithelium | UBERON:0000397 | 93.55 | gold quality |
| gingival epithelium | UBERON:0001949 | 93.19 | gold quality |
| bronchus | UBERON:0002185 | 93.04 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 92.84 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 92.80 | gold quality |
| corpus epididymis | UBERON:0004359 | 92.79 | gold quality |
| gingiva | UBERON:0001828 | 92.57 | gold quality |
| right uterine tube | UBERON:0001302 | 92.54 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 92.49 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 92.33 | gold quality |
| skin of hip | UBERON:0001554 | 92.27 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 92.18 | gold quality |
| tonsil | UBERON:0002372 | 91.97 | gold quality |
| pancreatic ductal cell | CL:0002079 | 91.91 | gold quality |
| squamous epithelium | UBERON:0006914 | 91.90 | gold quality |
| colonic mucosa | UBERON:0000317 | 91.78 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 91.66 | gold quality |
| oviduct epithelium | UBERON:0004804 | 91.66 | gold quality |
| calcaneal tendon | UBERON:0003701 | 91.51 | gold quality |
| caput epididymis | UBERON:0004358 | 91.48 | gold quality |
| sperm | CL:0000019 | 91.40 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 91.06 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 90.95 | gold quality |
| adrenal tissue | UBERON:0018303 | 90.72 | gold quality |
| upper arm skin | UBERON:0004263 | 90.66 | gold quality |
| islet of Langerhans | UBERON:0000006 | 90.54 | gold quality |
| nephron tubule | UBERON:0001231 | 90.52 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 49.94 |
| E-ANND-3 | yes | 9.34 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, TP53
miRNA regulators (miRDB)
88 targeting LRBA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 36)
- The crystal structure of the aPH-BEACH domains of LRBA were studied. (PMID:15554694)
- mutations in LRBA cause an immune deficiency characterized by defects in B cell activation and autophagy and by susceptibility to apoptosis, associated with a clinical phenotype of hypogammaglobulinemia and autoimmunity (PMID:22608502)
- A truncating mutation in LRBA, which abolished protein expression, was identified as the most likely candidate in a consanguineous family with chronic inflammatory bowel disease-like disorder and combined immunodeficiency. (PMID:22721650)
- LRBA deficiency is a novel cause of immune dysregulation, polyendocrinopathy, enteropathy, X-linked (IPEX) syndrome and Treg cell deficiency associated with metabolic dysfunction and increased apoptosis of Treg cells. (PMID:25468195)
- A homozygous missense mutation in lipopolysaccharide-responsive and beige-like anchor gene is associated with inflammatory bowel disease. (PMID:25479458)
- LRBA mutation was associated with an autoimmune lymphoproliferative syndrome-like disease characterized by splenomegaly and lymphadenopathy, cytopenia, elevated double negative T cells and raised serum Fas ligand levels. (PMID:25931386)
- Variants of LRBA were associated with common variable immunodeficiency. (PMID:26122175)
- Patients with LRBA deficiency manifested a dramatic and sustained improvement in response to abatacept, a CTLA4 (cytotoxic T lymphocyte antigen-4)-immunoglobulin fusion drug. (PMID:26206937)
- homozygous frame shift mutation results in refractory Celiac dsease (PMID:26686526)
- mutations result in various immunodeficiency phenotypes (PMID:26707784)
- diagnosis of LRBA deficiency was confirmed by a fluorescence-activated cell sorting-based immunoassay (PMID:26745254)
- Among 2 brothers homozygous for LPS responsive beige-like anchor protein (LRBA) mutation, one developed Evans syndrome and deceased at age 8.5, and his brother carried the same homozygous LRBA mutation with early-onset erosive polyarthritis. (PMID:27057999)
- Case Report: potential causative role of LRBA gene mutations in juvenile arthritis. (PMID:28134088)
- Assessing total CTLA-4 expression levels was found to be optimal when restricting analysis to the CD45RA(-)Foxp3(+) fraction. CTLA-4 induction following stimulation, and the use of lysosomal-blocking compounds, distinguished CTLA-4 from LRBA mutations (PMID:28159733)
- As diabetes was the presenting feature in six of nine individuals, we recommend that testing for LRBA mutations is considered in all patients with newly diagnosed neonatal diabetes and in those with infancy-onset diabetes (<12 months), especially when a recessive inheritance is suspected or additional autoimmune features are present (PMID:28473463)
- cTFH cell dysregulation in patients with LRBA deficiency reflects impaired control of TFH cell differentiation because of profoundly decreased CTLA4 expression on regulatory T cells and probably contributes to autoimmunity in patients with this disease. Serial monitoring of cTFH cell frequencies is highly useful in gauging the clinical response of LRBA-deficient patients to CTLA4-Ig therapy. (PMID:28601686)
- LRBA is required for hair bundle maintenance in cochlear hair cells and for hearing. (PMID:28893864)
- The present results suggest that LRBA SNPs are associated with CWP susceptibility in a Chinese population. (PMID:28953250)
- Mutations found in 7 out of 18 children with Evans syndrome (ES) involved lipopolysaccharide-responsive beige-like anchor protein (LRBA) and cytotoxic T-lymphocyte protein 4 (CTLA-4). (PMID:29330115)
- LRBA Deficiency in Siblings. (PMID:29461210)
- This easy flow cytometry-based assay allows a fast screening of patients with suspicion of LRBA deficiency reducing therefore the number of patients requiring LRBA sequencing and accelerating the treatment implementation. Detection of biallelic mutations in LRBA is however required for a definitive diagnosis. (PMID:29740429)
- Our findings demonstrated an imbalance in Th subsets, mainly in Th1-like Th17 and Treg cells and their corresponding cytokines in LRBA deficiency, which might be important in the immunopathogenesis of autoimmunity and enteropathy. (PMID:29806698)
- We are the first to report normal CTLA-4 expression and normal Treg-cell function in the face of overactive TH17 immunity in an LRBA-deficient patient, illustrating that loss of CTLA-4 is not a prerequisite for autoimmunity in LRBA deficiency (PMID:30193839)
- CTLA-4 Expression in CD4+ T Cells From Patients With LRBA Deficiency. (PMID:30530390)
- lymphocyte chromosomal radiosensitivity in patients with LPS responsive beige-like anchor protein (LRBA) deficiency (PMID:30714845)
- Dissecting the localization of lipopolysaccharide-responsive and beige-like anchor protein (LRBA) in the endomembrane system. (PMID:31883622)
- Clinical Phenotypes and Immunological Characteristics of 18 Egyptian LRBA Deficiency Patients. (PMID:32506362)
- Evaluation of Expression of LRBA and CTLA-4 Proteins in Common Variable Immunodeficiency Patients. (PMID:33191838)
- Pulmonary manifestations of immune dysregulation in CTLA-4 haploinsufficiency and LRBA deficiency. (PMID:33710794)
- Case Report: Refractory Autoimmune Gastritis Responsive to Abatacept in LRBA Deficiency. (PMID:33717114)
- Comprehensive comparison between 222 CTLA-4 haploinsufficiency and 212 LRBA deficiency patients: a systematic review. (PMID:33788257)
- Novel compound heterozygous LRBA deletions in a 6-month-old with neonatal diabetes. (PMID:33845048)
- Comparing the levels of CTLA-4-dependent biological defects in patients with LRBA deficiency and CTLA-4 insufficiency. (PMID:35491430)
- Clinically Complex LRBA Deficiency Due to a Founder Allele in the Georgian Jewish Population. (PMID:36063261)
- Various phenotypes of LRBA gene with compound heterozygous variation: A case series report of pediatric cytopenia patients. (PMID:36074705)
- Arf1-dependent LRBA recruitment to Rab4 endosomes is required for endolysosome homeostasis. (PMID:39325073)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lrba | ENSDARG00000031108 |
| mus_musculus | Lrba | ENSMUSG00000028080 |
| rattus_norvegicus | Lrba | ENSRNOG00000023453 |
| caenorhabditis_elegans | WBGENE00004760 | |
| caenorhabditis_elegans | WBGENE00007752 |
Paralogs (7): NSMAF (ENSG00000035681), WDFY4 (ENSG00000128815), LYST (ENSG00000143669), NBEAL1 (ENSG00000144426), NBEAL2 (ENSG00000160796), WDFY3 (ENSG00000163625), NBEA (ENSG00000172915)
Protein
Protein identifiers
Lipopolysaccharide-responsive and beige-like anchor protein — P50851 (reviewed: P50851)
Alternative names: Beige-like protein, CDC4-like protein
All UniProt accessions (14): A0A3B3IS13, A0A3B3ISK3, A0A3B3IU76, A0A494BZW2, P50851, A0A494C0R9, A0A494C1L5, A0A8V8TKR0, A0A8V8TL26, A0A8V8TLZ6, A0A8V8TM79, E9PEM5, H0Y9N9, H0YA17
UniProt curated annotations — full annotation on UniProt →
Function. Involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules. Involved in phagophore growth during mitophagy by regulating ATG9A trafficking to mitochondria.
Subunit / interactions. Interacts with TOM1 and TOLLIP.
Subcellular location. Cell membrane. Endoplasmic reticulum membrane. Golgi apparatus. trans-Golgi network membrane. Lysosome membrane.
Tissue specificity. Ubiquitous.
Disease relevance. Immunodeficiency, common variable, 8, with autoimmunity (CVID8) [MIM:614700] An autosomal recessive immunologic disorder associated with defective B-cell differentiation and decreased or absent antibody production. Affected individuals have early-childhood onset of recurrent infections, particularly respiratory infections, and also develop variable autoimmune disorders, including idiopathic thrombocytopenic purpura, autoimmune hemolytic anemia, and inflammatory bowel disease. The disease is caused by variants affecting the gene represented in this entry.
Induction. By bacterial lipopolysaccharides (LPS).
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P50851-1 | 1 | yes |
| P50851-2 | 2 |
RefSeq proteins (4): NP_001186211, NP_001351834, NP_001354479, NP_006717 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000409 | BEACH_dom | Domain |
| IPR001680 | WD40_rpt | Repeat |
| IPR010508 | NBEA-like_DUF1088 | Domain |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR023362 | PH-BEACH_dom | Domain |
| IPR031570 | NBEA/BDCP_DUF4704 | Domain |
| IPR036322 | WD40_repeat_dom_sf | Homologous_superfamily |
| IPR036372 | BEACH_dom_sf | Homologous_superfamily |
| IPR046851 | NBCH_WD40 | Domain |
| IPR046852 | Neurobeachin_a-sol | Domain |
| IPR050865 | BEACH_Domain | Family |
Pfam: PF02138, PF06469, PF13385, PF14844, PF15787, PF20425, PF20426
UniProt features (93 total): helix 23, modified residue 17, sequence variant 11, strand 10, compositionally biased region 7, repeat 6, region of interest 6, sequence conflict 3, domain 2, splice variant 2, turn 2, initiator methionine 1, chain 1, coiled-coil region 1, transmembrane region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1T77 | X-RAY DIFFRACTION | 2.4 |
Predicted structure (AlphaFold)
No AlphaFold model available for P50851 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (17): 2, 10, 979, 1003, 1100, 1135, 1139, 1233, 1247, 1261, 1488, 1498, 1605, 1767, 1770, 2064, 2496
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 329 (showing top):
BENPORATH_ES_WITH_H3K27ME3, GOBP_VACUOLE_ORGANIZATION, KAAB_FAILED_HEART_ATRIUM_DN, GOCC_VACUOLAR_MEMBRANE, TTTGTAG_MIR520D, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, CAGCTG_AP4_Q5, GOBP_MACROAUTOPHAGY, KYNG_DNA_DAMAGE_BY_GAMMA_RADIATION, GENTILE_UV_HIGH_DOSE_DN, ATTCTTT_MIR186, GOBP_ORGANELLE_ASSEMBLY, ZHANG_BREAST_CANCER_PROGENITORS_UP, CUI_TCF21_TARGETS_2_DN, CTTTGTA_MIR524
GO Biological Process (3): mitophagy (GO:0000423), intracellular protein localization (GO:0008104), protein localization to phagophore assembly site (GO:0034497)
GO Molecular Function (2): protein kinase binding (GO:0019901), protein binding (GO:0005515)
GO Cellular Component (9): lysosomal membrane (GO:0005765), endoplasmic reticulum membrane (GO:0005789), Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020), cytoplasm (GO:0005737), lysosome (GO:0005764), endoplasmic reticulum (GO:0005783)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 3 |
| cellular anatomical structure | 3 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| autophagy of mitochondrion | 1 |
| macroautophagy | 1 |
| macromolecule localization | 1 |
| autophagosome assembly | 1 |
| intracellular protein localization | 1 |
| kinase binding | 1 |
| binding | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| intracellular anatomical structure | 1 |
| lytic vacuole | 1 |
Protein interactions and networks
STRING
964 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LRBA | CTLA4 | P16410 | 800 |
| LRBA | PRKACA | P17612 | 718 |
| LRBA | PRKACG | P22612 | 717 |
| LRBA | PRKACB | P22694 | 717 |
| LRBA | FBXW7 | Q969H0 | 657 |
| LRBA | PIK3R4 | Q99570 | 656 |
| LRBA | TTC7A | Q9ULT0 | 621 |
| LRBA | TNFRSF13B | O14836 | 591 |
| LRBA | DOCK8 | Q8NF50 | 582 |
| LRBA | STXBP2 | Q15833 | 558 |
| LRBA | TNFRSF13C | Q96RJ3 | 506 |
| LRBA | FOXP3 | Q9BZS1 | 499 |
| LRBA | ICOS | Q9Y6W8 | 473 |
| LRBA | PIK3R1 | P27986 | 464 |
| LRBA | PRKCD | Q05655 | 460 |
IntAct
126 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED4 | MED19 | psi-mi:“MI:2364”(proximity) | 0.900 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CTLA4 | LRBA | psi-mi:“MI:0915”(physical association) | 0.670 |
| RCCD1 | SPAG9 | psi-mi:“MI:0914”(association) | 0.640 |
| RELT | OXSR1 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC1A1 | AGPAT2 | psi-mi:“MI:0914”(association) | 0.640 |
| NIPAL1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.640 |
| RAB9A | CHM | psi-mi:“MI:2364”(proximity) | 0.610 |
| CT55 | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| GYPB | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| EPHA1 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
| INSYN2A | CHUK | psi-mi:“MI:0914”(association) | 0.530 |
| RIC3 | ATP9A | psi-mi:“MI:0914”(association) | 0.530 |
| CD70 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| CTLA4 | B4GALT5 | psi-mi:“MI:0914”(association) | 0.530 |
| TGOLN2 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.420 |
| LRBA | CTLA4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LRBA | ABL1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FYN | LRBA | psi-mi:“MI:0915”(physical association) | 0.400 |
| LRBA | H3C13 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LRBA | SENP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RIPK4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| NOTCH1 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (241): LRBA (Affinity Capture-RNA), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Proximity Label-MS), LRBA (Proximity Label-MS), LRBA (Proximity Label-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS), LRBA (Affinity Capture-MS)
ESM2 similar proteins: A0JM23, A0M8T3, A1X154, A6H7D1, A7MBF6, A8Y5U1, B1WC10, E9Q9R9, F1M649, F1MHT9, O00750, O88480, O95876, P0CI65, P50851, Q008S8, Q00PJ3, Q07E17, Q07E30, Q07E43, Q09YN0, Q108U1, Q15052, Q2IBF5, Q2IBG0, Q2QLA4, Q2QLB5, Q32NR4, Q32NR9, Q3UP24, Q3V129, Q4V7F0, Q5XXR3, Q5ZLR6, Q692V3, Q6AZT7, Q6P2S7, Q6P3V7, Q6PIY5, Q6ZS30
Diamond homologs: A8XSV3, D4A929, E7FAW3, E9Q2M9, F4HZB2, F4IG73, F4JD14, F4JHT3, O35242, P0C6P0, P25356, P50851, P97412, Q19317, Q54PP7, Q54RQ8, Q55AV3, Q55DM1, Q562E7, Q5ND34, Q6VNB8, Q6ZNJ1, Q6ZQA0, Q6ZS30, Q6ZS81, Q7LKZ7, Q86JF2, Q8IZQ1, Q8NFP9, Q92636, Q99698, Q9DDD5, Q9EPN1, Q9ESE1, Q9TTK4, Q9W060, Q9W4E2, E7FEV0, F4JY12, Q10122
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| E2F1 | “up-regulates quantity by expression” | LRBA | “transcriptional regulation” |
| TP53 | “down-regulates quantity by repression” | LRBA | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 167 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| EPHA-mediated growth cone collapse | 5 | 17.6× | 2e-03 |
| EPH-ephrin mediated repulsion of cells | 6 | 12.2× | 2e-03 |
| Constitutive Signaling by Aberrant PI3K in Cancer | 8 | 9.4× | 1e-03 |
| EPH-Ephrin signaling | 6 | 9.2× | 5e-03 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 8 | 7.2× | 2e-03 |
| PIP3 activates AKT signaling | 9 | 5.6× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| peptidyl-tyrosine phosphorylation | 6 | 17.0× | 2e-03 |
| ephrin receptor signaling pathway | 6 | 13.8× | 2e-03 |
| cell surface receptor protein tyrosine kinase signaling pathway | 7 | 8.2× | 5e-03 |
| protein autophosphorylation | 8 | 7.8× | 2e-03 |
| axon guidance | 10 | 6.1× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2607 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 125 |
| Likely pathogenic | 72 |
| Uncertain significance | 1226 |
| Likely benign | 910 |
| Benign | 112 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069622 | NM_001364905.1(LRBA):c.5125_5152dup (p.Gln1718delinsArgTer) | Pathogenic |
| 1070799 | NM_001364905.1(LRBA):c.5980C>T (p.Arg1994Ter) | Pathogenic |
| 1072644 | NM_001364905.1(LRBA):c.6909G>A (p.Trp2303Ter) | Pathogenic |
| 1072918 | NM_001364905.1(LRBA):c.3830C>G (p.Ser1277Ter) | Pathogenic |
| 1074569 | NC_000004.11:g.(?151604683)(151604889_?)del | Pathogenic |
| 1074570 | NC_000004.11:g.(?151336570)(151520303_?)del | Pathogenic |
| 1176175 | NM_001364905.1(LRBA):c.7009C>T (p.Arg2337Ter) | Pathogenic |
| 1176176 | NM_001364905.1(LRBA):c.6829del (p.Tyr2277fs) | Pathogenic |
| 1177585 | NM_001364905.1(LRBA):c.4261A>G (p.Ser1421Gly) | Pathogenic |
| 1361756 | NM_001364905.1(LRBA):c.448+1G>T | Pathogenic |
| 1376199 | NM_001364905.1(LRBA):c.6235del (p.Ser2079fs) | Pathogenic |
| 1391949 | NM_001364905.1(LRBA):c.1697del (p.Lys566fs) | Pathogenic |
| 1392922 | NM_001364905.1(LRBA):c.6269_6270delinsAA (p.Ser2090Ter) | Pathogenic |
| 1415306 | NM_001364905.1(LRBA):c.893del (p.Lys298fs) | Pathogenic |
| 1419646 | NC_000004.11:g.(?151814184)(151814321_?)del | Pathogenic |
| 1419984 | NM_001364905.1(LRBA):c.5060_5067del (p.Asn1687fs) | Pathogenic |
| 1424023 | NM_001364905.1(LRBA):c.488del (p.Asn163fs) | Pathogenic |
| 1424030 | NM_001364905.1(LRBA):c.2614del (p.Ser872fs) | Pathogenic |
| 1452672 | NM_001364905.1(LRBA):c.6319del (p.Ile2107fs) | Pathogenic |
| 1453544 | NM_001364905.1(LRBA):c.7928del (p.Asn2643fs) | Pathogenic |
| 1455821 | NM_001364905.1(LRBA):c.1736G>A (p.Trp579Ter) | Pathogenic |
| 1457482 | NM_001364905.1(LRBA):c.6551+1del | Pathogenic |
| 1458653 | NC_000004.11:g.(?151504182)(151656538_?)del | Pathogenic |
| 1458881 | NM_001364905.1(LRBA):c.2836_2839del (p.Glu945_Glu946insTer) | Pathogenic |
| 1495928 | NM_001364905.1(LRBA):c.5646-2A>T | Pathogenic |
| 162667 | NM_001364905.1(LRBA):c.2032C>T (p.Gln678Ter) | Pathogenic |
| 1687335 | NM_001364905.1(LRBA):c.534del (p.Asp179fs) | Pathogenic |
| 1974806 | NM_001364905.1(LRBA):c.5903G>A (p.Trp1968Ter) | Pathogenic |
| 2011098 | NM_001364905.1(LRBA):c.6979C>T (p.Arg2327Ter) | Pathogenic |
| 2013113 | NM_001364905.1(LRBA):c.2204_2205dup (p.Arg736fs) | Pathogenic |
SpliceAI
10976 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:150265813:CTAGG:C | acceptor_loss | 1.0000 |
| 4:150265814:T:A | acceptor_loss | 1.0000 |
| 4:150266459:G:C | acceptor_gain | 1.0000 |
| 4:150266459:G:GC | acceptor_gain | 1.0000 |
| 4:150277852:CCT:C | donor_gain | 1.0000 |
| 4:150277897:T:TA | donor_gain | 1.0000 |
| 4:150282448:A:AC | donor_gain | 1.0000 |
| 4:150282449:C:CC | donor_gain | 1.0000 |
| 4:150282449:CT:C | donor_gain | 1.0000 |
| 4:150302619:A:AC | donor_gain | 1.0000 |
| 4:150302619:ACTT:A | donor_loss | 1.0000 |
| 4:150302620:C:CC | donor_gain | 1.0000 |
| 4:150302620:CTT:C | donor_loss | 1.0000 |
| 4:150302621:TTA:T | donor_loss | 1.0000 |
| 4:150302622:TACTG:T | donor_loss | 1.0000 |
| 4:150302623:A:AC | donor_gain | 1.0000 |
| 4:150302623:ACTGC:A | donor_gain | 1.0000 |
| 4:150302624:C:CG | donor_gain | 1.0000 |
| 4:150302624:CT:C | donor_gain | 1.0000 |
| 4:150302624:CTG:C | donor_gain | 1.0000 |
| 4:150302624:CTGCC:C | donor_gain | 1.0000 |
| 4:150302789:CTTC:C | acceptor_gain | 1.0000 |
| 4:150302790:TTC:T | acceptor_gain | 1.0000 |
| 4:150302793:C:CC | acceptor_gain | 1.0000 |
| 4:150302794:T:A | acceptor_loss | 1.0000 |
| 4:150310381:CTGG:C | acceptor_gain | 1.0000 |
| 4:150310382:TGG:T | acceptor_gain | 1.0000 |
| 4:150310383:GG:G | acceptor_gain | 1.0000 |
| 4:150310383:GGC:G | acceptor_loss | 1.0000 |
| 4:150310384:GC:G | acceptor_loss | 1.0000 |
AlphaMissense
18757 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:150302670:A:G | W2669R | 1.000 |
| 4:150302670:A:T | W2669R | 1.000 |
| 4:150321295:A:T | V2520D | 1.000 |
| 4:150471681:A:G | W2215R | 1.000 |
| 4:150471681:A:T | W2215R | 1.000 |
| 4:150761839:T:A | Q1863H | 1.000 |
| 4:150761839:T:G | Q1863H | 1.000 |
| 4:150761842:C:A | W1862C | 1.000 |
| 4:150761842:C:G | W1862C | 1.000 |
| 4:150761843:C:G | W1862S | 1.000 |
| 4:150761844:A:G | W1862R | 1.000 |
| 4:150761844:A:T | W1862R | 1.000 |
| 4:150798087:A:C | C1858W | 1.000 |
| 4:150798094:A:G | L1856P | 1.000 |
| 4:150806312:A:G | L1826P | 1.000 |
| 4:150867841:A:G | W866R | 1.000 |
| 4:150867841:A:T | W866R | 1.000 |
| 4:150265786:C:A | G2843V | 0.999 |
| 4:150265786:C:T | G2843E | 0.999 |
| 4:150265798:C:T | G2839D | 0.999 |
| 4:150285943:A:C | S2714R | 0.999 |
| 4:150285943:A:T | S2714R | 0.999 |
| 4:150285945:T:G | S2714R | 0.999 |
| 4:150302678:A:G | L2666P | 0.999 |
| 4:150302688:C:G | D2663H | 0.999 |
| 4:150302694:A:G | S2661P | 0.999 |
| 4:150302696:C:T | G2660E | 0.999 |
| 4:150302697:C:A | G2660W | 0.999 |
| 4:150302753:A:T | V2641D | 0.999 |
| 4:150310254:A:C | S2619R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000001906 (4:150877815 A>C), RS1000003629 (4:150518860 TAAC>T), RS1000005145 (4:150560648 C>A,G), RS1000010116 (4:150941862 G>A), RS1000010980 (4:150468756 G>C), RS10000193 (4:150695941 A>G), RS1000022788 (4:150441642 T>C), RS1000026919 (4:150522910 G>A,C), RS1000027368 (4:150529296 A>G), RS1000029531 (4:150965205 A>T), RS1000030116 (4:150695888 A>C), RS1000037461 (4:150551075 T>G), RS1000038587 (4:150385037 C>T), RS1000039179 (4:150943928 T>C), RS1000045363 (4:150381197 ACATT>A)
Disease associations
OMIM: gene MIM:606453 | disease phenotypes: MIM:614700, MIM:156000, MIM:617296, MIM:615877, MIM:181500, MIM:142623, MIM:615401
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| combined immunodeficiency due to LRBA deficiency | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| combined immunodeficiency due to LRBA deficiency | Definitive | AR |
Mondo (8): combined immunodeficiency due to LRBA deficiency (MONDO:0013863), Meniere disease (MONDO:0007972), spastic paraplegia, intellectual disability, nystagmus, and obesity (MONDO:0015007), colobomatous microphthalmia-rhizomelic dysplasia syndrome (MONDO:0014380), schizophrenia (MONDO:0005090), long QT syndrome (MONDO:0002442), Hirschsprung disease, susceptibility to, 1 (MONDO:0007723), severe combined immunodeficiency due to CORO1A deficiency (MONDO:0014168)
Orphanet (7): Syndromic autoimmune enteropathy due to LRBA deficiency (Orphanet:445018), Spastic paraplegia-intellectual disability-nystagmus-obesity syndrome (Orphanet:521390), Colobomatous microphthalmia-rhizomelic dysplasia syndrome (Orphanet:424099), Hirschsprung disease (Orphanet:388), Severe combined immunodeficiency due to CORO1A deficiency (Orphanet:228003), NON RARE IN EUROPE: Menière disease (Orphanet:45360), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140)
HPO phenotypes
45 total (30 of 45 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000403 | Recurrent otitis media |
| HP:0000509 | Conjunctivitis |
| HP:0000554 | Uveitis |
| HP:0000821 | Hypothyroidism |
| HP:0001045 | Vitiligo |
| HP:0001369 | Arthritis |
| HP:0001508 | Failure to thrive |
| HP:0001510 | Growth delay |
| HP:0001744 | Splenomegaly |
| HP:0001873 | Thrombocytopenia |
| HP:0001876 | Pancytopenia |
| HP:0001890 | Autoimmune hemolytic anemia |
| HP:0001973 | Autoimmune thrombocytopenia |
| HP:0002028 | Chronic diarrhea |
| HP:0002037 | Inflammation of the large intestine |
| HP:0002090 | Pneumonia |
| HP:0002099 | Asthma |
| HP:0002110 | Bronchiectasis |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002582 | Atrophic gastritis |
| HP:0002583 | Colitis |
| HP:0002665 | Lymphoma |
| HP:0002716 | Lymphadenopathy |
| HP:0002719 | Recurrent infections |
| HP:0002720 | Decreased circulating IgA concentration |
| HP:0002721 | Immunodeficiency |
| HP:0002850 | Decreased circulating total IgM |
| HP:0004315 | Decreased circulating IgG concentration |
| HP:0005523 | Lymphoproliferative disorder |
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001715_3 | Bipolar disorder with mood-incongruent psychosis | 1.000000e-07 |
| GCST002997_2 | Helix rolling | 2.000000e-08 |
| GCST003001_5 | Ear morphology | 4.000000e-08 |
| GCST004079_1 | Drug-induced hepatocellular liver injury | 5.000000e-09 |
| GCST006628_39 | Systolic blood pressure | 4.000000e-10 |
| GCST007209_5 | Gallstone disease | 5.000000e-27 |
| GCST010397_65 | Gut microbiota (bacterial taxa, rank normal transformation method) | 5.000000e-06 |
| GCST90002398_461 | Neutrophil count | 1.000000e-13 |
| GCST90002407_448 | White blood cell count | 1.000000e-13 |
| GCST90011900_93 | Serum alkaline phosphatase levels | 3.000000e-18 |
| GCST90013406_218 | Liver enzyme levels (alkaline phosphatase) | 2.000000e-26 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007670 | helix rolling |
| EFO:0007664 | outer ear morphology trait |
| EFO:0006335 | systolic blood pressure |
| EFO:0007874 | gut microbiome measurement |
| EFO:0004833 | neutrophil count |
| EFO:0004533 | alkaline phosphatase measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D008575 | Meniere Disease | C09.218.568.217.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066253 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 3 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.78 | Kd | 167.1 | nM | CHEMBL5653589 |
| 6.78 | ED50 | 167.1 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 4 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148664: Binding affinity to human LRBA incubated for 45 mins by Kinobead based pull down assay | kd | 0.1671 | uM |
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 8 |
| Aflatoxin B1 | increases methylation, affects expression, decreases expression | 5 |
| Cisplatin | affects cotreatment, decreases expression, increases expression | 3 |
| Valproic Acid | affects expression, decreases methylation, increases expression | 3 |
| Acetaminophen | decreases expression | 2 |
| Air Pollutants | affects cotreatment, affects expression, affects oxidation, increases abundance, decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects oxidation, increases abundance, affects cotreatment, affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | decreases expression, increases abundance | 1 |
| cobaltous chloride | decreases expression | 1 |
| ochratoxin A | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| coumarin | decreases phosphorylation | 1 |
| methacrylaldehyde | affects oxidation, increases abundance, affects cotreatment, affects expression | 1 |
| epigallocatechin gallate | decreases expression, affects cotreatment | 1 |
| bicalutamide | increases expression | 1 |
| tamibarotene | affects expression | 1 |
| ICG 001 | decreases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651706 | Binding | Binding affinity to human LRBA incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E0WI | Ubigene Jurkat, Clone E6-1 LRBA KO | Cancer cell line | Male |
| CVCL_SV80 | HAP1 LRBA (-) 1 | Cancer cell line | Male |
| CVCL_SV81 | HAP1 LRBA (-) 2 | Cancer cell line | Male |
| CVCL_SV82 | HAP1 LRBA (-) 3 | Cancer cell line | Male |
| CVCL_SV83 | HAP1 LRBA (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01574313 | PHASE4 | COMPLETED | Effect of Stellate Ganglion Block on Meniere’s Disease |
| NCT02529475 | PHASE4 | TERMINATED | Evaluation of Inner Ear and Brain Structures With Contrast-enhanced MRI in Healthy Subjects (HYDROPS) |
| NCT04815187 | PHASE4 | ACTIVE_NOT_RECRUITING | Repurposed Use of Allergic Rhinitis and Allergic Asthma Drug to Reduce Vertigo and Hearing Loss in Meniere’s Disease |
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
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Related Atlas pages
- Associated diseases: combined immunodeficiency due to LRBA deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colobomatous microphthalmia-rhizomelic dysplasia syndrome, combined immunodeficiency due to LRBA deficiency, drug-induced liver injury, gallstones, Hirschsprung disease, susceptibility to, 1, long QT syndrome, Meniere disease, severe combined immunodeficiency due to CORO1A deficiency, spastic paraplegia, intellectual disability, nystagmus, and obesity