LRIG3-DT

Summary

LRIG3-DT (LRIG3 divergent transcript, HGNC:55476) is a long non-coding RNA gene on chromosome 12q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55476
Approved symbol	LRIG3-DT
Name	LRIG3 divergent transcript
Location	12q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257443
Ensembl biotype	lncRNA
Entrez	105369791
RNAcentral	URS00026A1E07 — lncRNA, 712 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 64 — 64 lncRNA

ENST00000547590, ENST00000686887, ENST00000716008, ENST00000716009, ENST00000716010, ENST00000716011, ENST00000716012, ENST00000716013, ENST00000716014, ENST00000804556, ENST00000804557, ENST00000804558, ENST00000804559, ENST00000804560, ENST00000804561, ENST00000804562, ENST00000804563, ENST00000804564, ENST00000804565, ENST00000804566, ENST00000804567, ENST00000804568, ENST00000804569, ENST00000804570, ENST00000804571, ENST00000804572, ENST00000804573, ENST00000804574, ENST00000804575, ENST00000804576, ENST00000804577, ENST00000804578, ENST00000804579, ENST00000804580, ENST00000804581, ENST00000804582, ENST00000804583, ENST00000804584, ENST00000804585, ENST00000804586, ENST00000804587, ENST00000804588, ENST00000804589, ENST00000804590, ENST00000804591, ENST00000804592, ENST00000804593, ENST00000804594, ENST00000804595, ENST00000804596, ENST00000804597, ENST00000804598, ENST00000804599, ENST00000804600, ENST00000804601, ENST00000804602, ENST00000804603, ENST00000804604, ENST00000804605, ENST00000804606, ENST00000804607, ENST00000804608, ENST00000804609, ENST00000804611

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547590 — 4 exons

Exon	Start	End
ENSE00002327250	58921399	58921472
ENSE00002375696	59056006	59056108
ENSE00004196049	58920627	58920790
ENSE00004196089	59064013	59065217

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 96.47.

Top tissues by expression

111 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	96.47	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.48	gold quality
sural nerve	UBERON:0015488	78.62	silver quality
hindlimb stylopod muscle	UBERON:0004252	67.35	gold quality
skeletal muscle tissue	UBERON:0001134	67.17	gold quality
ventricular zone	UBERON:0003053	66.23	gold quality
tonsil	UBERON:0002372	62.80	gold quality
gall bladder	UBERON:0002110	61.14	gold quality
duodenum	UBERON:0002114	60.68	gold quality
islet of Langerhans	UBERON:0000006	60.63	gold quality
muscle of leg	UBERON:0001383	59.44	gold quality
gastrocnemius	UBERON:0001388	58.88	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.40	gold quality
monocyte	CL:0000576	55.85	gold quality
liver	UBERON:0002107	55.58	gold quality
skin of abdomen	UBERON:0001416	55.22	gold quality
rectum	UBERON:0001052	55.04	gold quality
zone of skin	UBERON:0000014	54.31	gold quality
calcaneal tendon	UBERON:0003701	54.10	gold quality
saliva-secreting gland	UBERON:0001044	53.90	gold quality
skin of leg	UBERON:0001511	53.68	gold quality
minor salivary gland	UBERON:0001830	53.67	gold quality
mucosa of transverse colon	UBERON:0004991	53.10	gold quality
vermiform appendix	UBERON:0001154	52.63	gold quality
right lobe of liver	UBERON:0001114	52.36	gold quality
descending thoracic aorta	UBERON:0002345	52.29	gold quality
blood	UBERON:0000178	51.71	gold quality
prefrontal cortex	UBERON:0000451	51.35	gold quality
heart left ventricle	UBERON:0002084	51.04	gold quality
body of stomach	UBERON:0001161	50.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.