LRP1
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Also known as LRPCD91LRP1AAPOERIGFBP3R1IGFBP-3R
Summary
LRP1 (LDL receptor related protein 1, HGNC:6692) is a protein-coding gene on chromosome 12q13.3, encoding Prolow-density lipoprotein receptor-related protein 1 (Q07954). Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells.
This gene encodes a member of the low-density lipoprotein receptor family of proteins. The encoded preproprotein is proteolytically processed by furin to generate 515 kDa and 85 kDa subunits that form the mature receptor (PMID: 8546712). This receptor is involved in several cellular processes, including intracellular signaling, lipid homeostasis, and clearance of apoptotic cells. In addition, the encoded protein is necessary for the alpha 2-macroglobulin-mediated clearance of secreted amyloid precursor protein and beta-amyloid, the main component of amyloid plaques found in Alzheimer patients. Expression of this gene decreases with age and has been found to be lower than controls in brain tissue from Alzheimer’s disease patients.
Source: NCBI Gene 4035 — RefSeq curated summary.
At a glance
- Gene–disease (curated): keratosis pilaris atrophicans (Moderate, GenCC) — +4 more curated relationships
- GWAS associations: 52
- Clinical variants (ClinVar): 756 total — 5 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 2
- Druggable target: yes
- MANE Select transcript:
NM_002332
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6692 |
| Approved symbol | LRP1 |
| Name | LDL receptor related protein 1 |
| Location | 12q13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LRP, CD91, LRP1A, APOER, IGFBP3R1, IGFBP-3R |
| Ensembl gene | ENSG00000123384 |
| Ensembl biotype | protein_coding |
| OMIM | 107770 |
| Entrez | 4035 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 6 protein_coding, 5 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000243077, ENST00000338962, ENST00000451724, ENST00000553277, ENST00000553446, ENST00000554118, ENST00000554174, ENST00000555124, ENST00000555941, ENST00000556247, ENST00000556356, ENST00000556830
RefSeq mRNA: 1 — MANE Select: NM_002332
NM_002332
CCDS: CCDS8932
Canonical transcript exons
ENST00000243077 — 89 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000838818 | 57143679 | 57143798 |
| ENSE00001107512 | 57138459 | 57138581 |
| ENSE00001107525 | 57141374 | 57141511 |
| ENSE00001107552 | 57145227 | 57145490 |
| ENSE00001107561 | 57144972 | 57145100 |
| ENSE00001217215 | 57128483 | 57129031 |
| ENSE00001289847 | 57195658 | 57195780 |
| ENSE00001290843 | 57193899 | 57194012 |
| ENSE00001290948 | 57180330 | 57180479 |
| ENSE00001290991 | 57167444 | 57167524 |
| ENSE00001291411 | 57196087 | 57196277 |
| ENSE00001291635 | 57200442 | 57200535 |
| ENSE00001292073 | 57177427 | 57177591 |
| ENSE00001292593 | 57184085 | 57184214 |
| ENSE00001292871 | 57197299 | 57197384 |
| ENSE00001294437 | 57173780 | 57173980 |
| ENSE00001295270 | 57162858 | 57162983 |
| ENSE00001295680 | 57205109 | 57205249 |
| ENSE00001296112 | 57175909 | 57176106 |
| ENSE00001297467 | 57208038 | 57208216 |
| ENSE00001297961 | 57178890 | 57179021 |
| ENSE00001298063 | 57158402 | 57158638 |
| ENSE00001298595 | 57198156 | 57198343 |
| ENSE00001299409 | 57191320 | 57191512 |
| ENSE00001299981 | 57159825 | 57160005 |
| ENSE00001301122 | 57156777 | 57156920 |
| ENSE00001302141 | 57195271 | 57195399 |
| ENSE00001302177 | 57154479 | 57154701 |
| ENSE00001303363 | 57208711 | 57208817 |
| ENSE00001304021 | 57185081 | 57185205 |
| ENSE00001305366 | 57199212 | 57199400 |
| ENSE00001305812 | 57183379 | 57183510 |
| ENSE00001306379 | 57202421 | 57202537 |
| ENSE00001307523 | 57204627 | 57204749 |
| ENSE00001307564 | 57181157 | 57181291 |
| ENSE00001308210 | 57184839 | 57184990 |
| ENSE00001309278 | 57179782 | 57179956 |
| ENSE00001311178 | 57179329 | 57179556 |
| ENSE00001312663 | 57175460 | 57175705 |
| ENSE00001314212 | 57180667 | 57180807 |
| ENSE00001314255 | 57195863 | 57196003 |
| ENSE00001314694 | 57201780 | 57201905 |
| ENSE00001315700 | 57196982 | 57197165 |
| ENSE00001316630 | 57173168 | 57173350 |
| ENSE00001316690 | 57190805 | 57191009 |
| ENSE00001316808 | 57192845 | 57192970 |
| ENSE00001317407 | 57165805 | 57165945 |
| ENSE00001318058 | 57194985 | 57195101 |
| ENSE00001318488 | 57198465 | 57198670 |
| ENSE00001318771 | 57162317 | 57162518 |
| ENSE00001318999 | 57166930 | 57167046 |
| ENSE00001319306 | 57193566 | 57193685 |
| ENSE00001319434 | 57194354 | 57194503 |
| ENSE00001319703 | 57177041 | 57177245 |
| ENSE00001320947 | 57154208 | 57154370 |
| ENSE00001321088 | 57193176 | 57193304 |
| ENSE00001321501 | 57169140 | 57169307 |
| ENSE00001322267 | 57201497 | 57201619 |
| ENSE00001323007 | 57185531 | 57185908 |
| ENSE00001323838 | 57194577 | 57194699 |
| ENSE00001324059 | 57203181 | 57203287 |
| ENSE00001324415 | 57166084 | 57166209 |
| ENSE00001325523 | 57178359 | 57178603 |
| ENSE00001325742 | 57197545 | 57197664 |
| ENSE00001326661 | 57184326 | 57184452 |
| ENSE00001327741 | 57160893 | 57161115 |
| ENSE00001328542 | 57199877 | 57200025 |
| ENSE00001328642 | 57187267 | 57187456 |
| ENSE00001328727 | 57180047 | 57180141 |
| ENSE00001330203 | 57156094 | 57156283 |
| ENSE00001330334 | 57183775 | 57183909 |
| ENSE00002526086 | 57212415 | 57213361 |
| ENSE00003477118 | 57210718 | 57210879 |
| ENSE00003509910 | 57209083 | 57209199 |
| ENSE00003519416 | 57211927 | 57212017 |
| ENSE00003525660 | 57211750 | 57211814 |
| ENSE00003537158 | 57200699 | 57200815 |
| ENSE00003553876 | 57203389 | 57203521 |
| ENSE00003561584 | 57211176 | 57211350 |
| ENSE00003573884 | 57206473 | 57206741 |
| ENSE00003588802 | 57201034 | 57201153 |
| ENSE00003620253 | 57210029 | 57210169 |
| ENSE00003623915 | 57211487 | 57211588 |
| ENSE00003627060 | 57204410 | 57204529 |
| ENSE00003628760 | 57205351 | 57205485 |
| ENSE00003658638 | 57212117 | 57212261 |
| ENSE00003673520 | 57209692 | 57209868 |
| ENSE00003691935 | 57205558 | 57205677 |
| ENSE00003692388 | 57210307 | 57210480 |
Expression profiles
Bgee: expression breadth ubiquitous, 293 present calls, max score 99.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 60.1123 / max 1236.6497, expressed in 1575 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 126153 | 53.5136 | 1541 |
| 126152 | 3.7300 | 1234 |
| 126156 | 1.5632 | 725 |
| 126151 | 0.6825 | 364 |
| 126150 | 0.4455 | 251 |
| 126171 | 0.1775 | 89 |
Top tissues by expression
301 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 99.28 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.08 | gold quality |
| ascending aorta | UBERON:0001496 | 99.07 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.07 | gold quality |
| right ovary | UBERON:0002118 | 99.04 | gold quality |
| left ovary | UBERON:0002119 | 99.01 | gold quality |
| right coronary artery | UBERON:0001625 | 98.97 | gold quality |
| peripheral nervous system | UBERON:0000010 | 98.77 | gold quality |
| nerve | UBERON:0001021 | 98.77 | gold quality |
| tibial nerve | UBERON:0001323 | 98.77 | gold quality |
| endocervix | UBERON:0000458 | 98.76 | gold quality |
| left coronary artery | UBERON:0001626 | 98.75 | gold quality |
| sural nerve | UBERON:0015488 | 98.75 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.74 | gold quality |
| omental fat pad | UBERON:0010414 | 98.73 | gold quality |
| peritoneum | UBERON:0002358 | 98.70 | gold quality |
| pericardium | UBERON:0002407 | 98.69 | gold quality |
| coronary artery | UBERON:0001621 | 98.67 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 98.65 | gold quality |
| aorta | UBERON:0000947 | 98.64 | gold quality |
| body of uterus | UBERON:0009853 | 98.64 | gold quality |
| left uterine tube | UBERON:0001303 | 98.53 | gold quality |
| ectocervix | UBERON:0012249 | 98.49 | gold quality |
| calcaneal tendon | UBERON:0003701 | 98.43 | gold quality |
| popliteal artery | UBERON:0002250 | 98.37 | gold quality |
| tibial artery | UBERON:0007610 | 98.37 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.34 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 98.16 | gold quality |
| apex of heart | UBERON:0002098 | 98.02 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 98.02 | gold quality |
Single-cell (SCXA)
Detected in 15 experiment(s), a significant marker in 14.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10287 | yes | 101.23 |
| E-HCAD-1 | yes | 76.32 |
| E-CURD-122 | yes | 67.90 |
| E-GEOD-135922 | yes | 60.23 |
| E-MTAB-8410 | yes | 56.76 |
| E-MTAB-6678 | yes | 39.96 |
| E-MTAB-9221 | yes | 26.86 |
| E-MTAB-9543 | yes | 21.33 |
| E-MTAB-8498 | yes | 11.91 |
| E-GEOD-81547 | yes | 9.01 |
| E-MTAB-9801 | yes | 7.28 |
| E-CURD-112 | yes | 6.55 |
| E-ENAD-27 | yes | 6.50 |
| E-MTAB-10290 | no | 549.62 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
3 targets.
| Target | Regulation |
|---|---|
| CCN2 | Repression |
| NOX4 | Repression |
| TGFB1 | Repression |
Upstream regulators (CollecTRI, top): APP, CNBP, CTNNB1, GLI3, HIF1A, IRF6, PPARG, RXRA, RXRB, SREBF1, SREBF2, TP53, YBX1
miRNA regulators (miRDB)
77 targeting LRP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-2681-5P | 99.75 | 67.64 | 1655 |
| HSA-MIR-8084 | 99.73 | 69.57 | 1760 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
Literature-anchored findings (GeneRIF, showing 40)
- LRP was involved essentially for the cell-mediated LDL oxidation by 12/15-lipoxygenase expressed in J774A.1 cells, suggesting an important pathophysiological role of this receptor-enzyme system as the initial trigger of the progression of atherosclerosis. (PMID:11479307)
- Interaction of CED-6/GULP, an adapter protein involved in engulfment of apoptotic cells with CED-1 and CD91/low density lipoprotein receptor-related protein (LRP). (PMID:11729193)
- function in facilitating cellular uptake and degrdation of beta-amyloid peptide (PMID:11823454)
- mediates fibronectin catabolism and inhibits fibronectin accumulation on cell surface; functions as a catabolic receptor for fibronectin (PMID:11867643)
- investigation of cleavage site resulting in release of intracellular domain (PMID:11907044)
- The involvement of human low-density lipoprotein receptor-related protein (LRP) in the clearance of FVIII was established by infusion of hLRP in vWF-deficient mice. (PMID:11992244)
- Low density lipoprotein receptor-related protein and factor IXa share structural requirements for binding to the A3 domain of coagulation factor VIII (PMID:12522143)
- LRP may function as a regulator of blood coagulation (PMID:12522212)
- High levels of CD91 may be a host factor that contributes to the maintenance of long-term nonprogression of HIV-1-infected “true” long-term nonprogressors (PMID:12531796)
- Allosteric modulation of ligand binding to low density lipoprotein receptor-related protein by the receptor-associated protein requires critical lysine residues within its carboxyl-terminal domain (PMID:12637503)
- is involved in the Lf-enhanced collagen gel contractile activity of WI-38 fibroblasts by converting the Lf binding signal into the activation of ERK1/2 and MLCK (PMID:12672816)
- dendritic cells derived from patients with Kaposi sarcoma in AIDS retain the ability to prime the adaptive arm of the immune system through CD91, leading to phenotypic activation and stimulation of tetramer-positive CD8+ cytotoxic T cells. (PMID:12750160)
- The T allele of the C766T polymorphism in the LRP1 gene is associated with an increased risk of breast cancer development in women of Caucasian origin. (PMID:12793904)
- apoER2 has a role in platelet adhesion and thrombus formation, along with beta-2-glycoprotein i (PMID:12807892)
- LRP1 has a role in inhibitin cell migration by binding to apoE, which activates cAMP-dependent protein kinase A (PMID:12857755)
- low density lipoprotein receptor-related protein cytoplasmic domain has a novel signaling function, negatively impacting transcriptional activity of the APP, Fe65, and Tip60 complex in the nucleus (PMID:12888553)
- Data show that tissue plasminogen activator upregulates matrix metalloproteinase-9 in cell culture and in vivo, and that this is mediated by the low-density lipoprotein receptor-related protein. (PMID:12960961)
- LRP1 is the type V TGF-beta receptor and mediates growth inhibition by IGFBP-3 (PMID:14597676)
- the presentation of LRP and the subsequent uptake of its ligands by malignant cells are both strongly regulated by MT1-MMP (PMID:14645246)
- Low density lipoprotein receptor-related protein-1 promotes beta1 integrin maturation and transport to the cell surface (PMID:14699139)
- LRP1 interacts with the human frizzled-1 (HFz1) and down-regulates the canonical Wnt signaling pathway (PMID:14739301)
- The low density lipoprotein receptor-related protein is a motogenic receptor for plasminogen activator inhibitor-1 (PMID:15001579)
- We suggest that these regional variations in LRP1 genotype and allele frequencies in AD could be related to the different patterns of association between this polymorphism and the disease in various European studies (PMID:15048651)
- Low-density lipoprotein receptor-related protein intracellular domain co-localizes with MafB to the nucleus and negatively regulates its transcriptional activity, suggesting a possible role for LRP in brain development (PMID:15135046)
- low density lipoprotein receptor-related protein-1 binds to cell surface annexin VI (PMID:15226301)
- phosphorylation of LRP by PKCalpha modulates the endocytic and signaling function of LRP by modifying its association with adaptor proteins (PMID:15272003)
- A direct influence of the LRP1 promoter polymorphism c.1-25C>G on the human in vivo LRP1 expression level was demonstrated in a survey of 448 German Caucasian subjects (PMID:15288502)
- Low-density lipoprotein receptor-related protein LRP interaction with amyloid beta-peptide (Abeta) and/or Abeta-induced LRP loss at the blood-brain barrier mediate brain accumulation of neurotoxic Abeta. (PMID:15294142)
- the absence of low-density lipoprotein receptor-related protein resulted in complete abrogation of beta2-integrin-dependent adhesion to endothelial cells in a perfusion system (PMID:15328156)
- Activation of nuclear factor-kappaB is critical for PF4-induced E-selectin expression, and LRP is the cell surface receptor mediating this effect (PMID:15591119)
- LRP1 plays a predominant role in human osteoblast expression of receptors of the LDLR family with a capacity for vitamin K1 uptake through chylomicron receptor endocytosis (PMID:15647823)
- endocytosis of LRP modulates cell surface distribution and processing of the beta-amyloid precursor protein (PMID:15705569)
- The protective effect of LRP1 in the vessel wall seems to be mainly due to its role in controlling certain signaling pathways. (PMID:15705932)
- Data suggest that there is a close interaction between beta-secretase (BACE) and LRP1 on the cell surface in association with lipid rafts, and that LRP1 is a novel BACE substrate. (PMID:15749709)
- deletion experiments suggested that the last 50 amino acid residues of LRP-soluble tail contain the important domain for altering APP processing and Abeta production (PMID:15772078)
- Increased surface expression of CD91 on CD14(+) monocytes is associated with the apparent HIV-1 resistance that is observed in HIV seronegative subjects. (PMID:15800028)
- like the LDL receptor, LRP prefers lipid-bound forms of apoE, but in contrast to the LDL receptor, both LRP and the VLDL receptor recognize all apoE isoforms (PMID:15863833)
- PDGFR-beta activation promotes its association with the low density lipoprotein receptor-related protein (PMID:15944146)
- LRP has roles in cell migration, proliferation and vascular permeability [review] (PMID:16102056)
- Review provides an overview of the structural and functional information that implicates transmembrane proteins CD91 and CD93 in complement 1q (C1q)-mediated functional effects, by promoting apoptotic clearance and phagocytosis, respectively. (Review) (PMID:16167883)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lrp1ab | ENSDARG00000029146 |
| danio_rerio | lrp1aa | ENSDARG00000097827 |
| mus_musculus | Lrp1 | ENSMUSG00000040249 |
| rattus_norvegicus | Lrp1 | ENSRNOG00000025053 |
| drosophila_melanogaster | arr | FBGN0000119 |
Paralogs (14): LRP6 (ENSG00000070018), LRP2 (ENSG00000081479), NID2 (ENSG00000087303), NID1 (ENSG00000116962), LDLR (ENSG00000130164), LRP3 (ENSG00000130881), LRP4 (ENSG00000134569), EGF (ENSG00000138798), LRP12 (ENSG00000147650), VLDLR (ENSG00000147852), LRP8 (ENSG00000157193), LRP5 (ENSG00000162337), LRP1B (ENSG00000168702), LRP10 (ENSG00000197324)
Protein
Protein identifiers
Prolow-density lipoprotein receptor-related protein 1 — Q07954 (reviewed: Q07954)
Alternative names: Alpha-2-macroglobulin receptor, Apolipoprotein E receptor
All UniProt accessions (5): Q07954, H0YJ88, H0YJI8, Q6PJ72, Q7Z7K9
UniProt curated annotations — full annotation on UniProt →
Function. Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Required for early embryonic development. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Acts as an LRPAP1 alpha-2-macroglobulin receptor. Acts as TAU/MAPT receptor and controls the endocytosis of TAU/MAPT as well as its subsequent spread. May modulate cellular events, such as APP metabolism, kinase-dependent intracellular signaling, neuronal calcium signaling as well as neurotransmission. Also acts as a receptor for IGFBP3 to mediate cell growth inhibition. (Microbial infection) Functions as a receptor for Pseudomonas aeruginosa exotoxin A.
Subunit / interactions. Heterodimer of an 85-kDa membrane-bound carboxyl subunit and a non-covalently attached 515-kDa N-terminal subunit. Intracellular domain interacts with MAFB. Found in a complex with PID1/PCLI1, LRP1 and CUBNI. Interacts with SNX17, PID1/PCLI1, PDGF and CUBN. The intracellular domain interacts with SHC1, GULP1 and DAB1. Can weakly interact (via NPXY motif) with DAB2 (via PID domain); the interaction is enhanced by tyrosine phosphorylation of the NPXY motif. Interacts with MDK; promotes neuronal survival. Interacts with LRPAP1; this interaction is followed by rapid internalization. Interacts with uPA/PLAU and PAI1/SERPINE1, either individually or in complex with each other, leading to rapid endocytosis; this interaction is abolished in the presence of LRPAP1/RAP. Also interacts with tPA/PLAT alone or in complex with SERPINE1. Interacts with the urokinase receptor PLAUR; this interaction leads to PLAUR internalization and is impaired in the presence of SORL1. Interacts with PDGFB. Interacts with TAU/MAPT, leading to endocytosis; this interaction is reduced in the presence of LRPAP1/RAP. Interacts with IGFBP3; this interaction mediates cell growth inhibition independently of IGF1. Interacts with ADGRG6. (Microbial infection) Interacts with bacterial exotoxins. (Microbial infection) Interacts with Rift valley fever virus (RVFV) glycoprotein N; this interaction facilitates virus entry.
Subcellular location. Cell membrane. Membrane. Coated pit Cell membrane. Coated pit Cytoplasm. Nucleus Golgi outpost. Cytoplasm. Cytoskeleton. Microtubule organizing center.
Tissue specificity. Most abundant in liver, brain and lung.
Post-translational modifications. Cleaved into a 85 kDa membrane-spanning subunit (LRP-85) and a 515 kDa large extracellular domain (LRP-515) that remains non-covalently associated. Gamma-secretase-dependent cleavage of LRP-85 releases the intracellular domain from the membrane. The N-terminus is blocked. Phosphorylated on serine and threonine residues. Phosphorylated on tyrosine residues upon stimulation with PDGF. Tyrosine phosphorylation promotes interaction with SHC1.
Disease relevance. Keratosis pilaris atrophicans (KPA) [MIM:604093] A group of rare genodermatoses characterized by keratotic follicular papules, variable degrees of inflammation, and secondary atrophic scarring. Most cases are associated with an atopic diathesis and keratosis pilaris on the extensor extremities. KPA is comprised of three distinct clinical subtypes: keratosis pilaris atrophicans faciei, atrophoderma vermiculatum, and keratosis follicularis spinulosa decalvans. Affected individuals may present with features overlapping the 3 subtypes. The disease is caused by variants affecting the gene represented in this entry. Developmental dysplasia of the hip 3 (DDH3) [MIM:620690] An autosomal dominant form of congenital dysplasia of the hip, a common skeletal anomaly in which the normal seating of the femoral head in the acetabulum is disrupted. Its severity ranges from mild instability of the femoral head with slight capsular laxity, permitting minimal lateral displacement, through moderate lateral displacement of the femoral head, without loss of contact of the head with the acetabulum, up to complete dislocation of the femoral head from the acetabulum. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the LDLR family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q07954-1 | 1 | yes |
| Q07954-2 | 2 |
RefSeq proteins (1): NP_002323* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000033 | LDLR_classB_rpt | Repeat |
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000742 | EGF | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR002172 | LDrepeatLR_classA_rpt | Repeat |
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR011042 | 6-blade_b-propeller_TolB-like | Homologous_superfamily |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR023415 | LDLR_class-A_CS | Conserved_site |
| IPR026823 | cEGF | Domain |
| IPR036055 | LDL_receptor-like_sf | Homologous_superfamily |
| IPR049883 | NOTCH1_EGF-like | Domain |
| IPR051221 | LDLR-related | Family |
Pfam: PF00057, PF00058, PF07645, PF12662, PF14670
UniProt features (409 total): disulfide bond 159, domain 53, glycosylation site 52, repeat 34, strand 26, binding site 18, sequence variant 17, turn 11, mutagenesis site 9, helix 7, modified residue 6, chain 4, sequence conflict 4, splice variant 2, topological domain 2, short sequence motif 2, signal peptide 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1J8E | X-RAY DIFFRACTION | 1.85 |
| 1CR8 | SOLUTION NMR | |
| 1D2L | SOLUTION NMR | |
| 2FYJ | SOLUTION NMR | |
| 2FYL | SOLUTION NMR | |
| 2KNX | SOLUTION NMR | |
| 2KNY | SOLUTION NMR |
Predicted structure (AlphaFold)
No AlphaFold model available for Q07954 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (18): 876; 878; 884; 885; 1032; 1035; 1037; 1039; 1045; 1046; 1080; 1083 …
Post-translational modifications (6): 2009, 4460, 4507, 4517, 4520, 4523
Disulfide bonds (159): 27–40, 34–53, 47–64, 72–85, 79–98, 92–108, 115–124, 120–133, 135–148, 154–164, 160–173, 175–188, 478–493, 489–504, 506–519, 807–818, 814–827, 829–842, 854–866, 861–879 …
Glycosylation sites (52): 114, 136, 185, 239, 274, 357, 446, 729, 928, 1050, 1154, 1155, 1195, 1218, 1511, 1558, 1575, 1616, 1645, 1723 …
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 4460 | strongly reduced phosphorylation and loss of interaction with shc1; when associated with a-4517; a-4520 and a-4523. |
| 4470–4473 | no effect on tyrosine phosphorylation. |
| 4470 | no effect on interaction with gulp1. |
| 4472 | no detectable effect on phosphorylation. |
| 4504–4507 | loss of tyrosine phosphorylation. abolishes interaction with shc1 and gulp1. |
| 4504 | loss of interaction with gulp1. |
| 4517 | strongly reduced phosphorylation and loss of interaction with shc1; when associated with a-4460; a-4520 and a-4523. |
| 4520 | strongly reduced phosphorylation and loss of interaction with shc1; when associated with a-4460; a-4517 and a-4523. |
| 4523 | strongly reduced phosphorylation and loss of interaction with shc1; when associated with a-4460; a-4517 and a-4520. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-2168880 | Scavenging of heme from plasma |
| R-HSA-975634 | Retinoid metabolism and transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-196854 | Metabolism of vitamins and cofactors |
| R-HSA-2173782 | Binding and Uptake of Ligands by Scavenger Receptors |
| R-HSA-2187338 | Visual phototransduction |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-6806667 | Metabolism of fat-soluble vitamins |
| R-HSA-9709957 | Sensory Perception |
MSigDB gene sets: 583 (showing top):
GOBP_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, GOBP_SMAD_PROTEIN_SIGNAL_TRANSDUCTION, RNGTGGGC_UNKNOWN, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, TAATAAT_MIR126, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_LYSOSOMAL_TRANSPORT, PAX4_01, TGCGCANK_UNKNOWN, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_INFLAMMATORY_RESPONSE, GOCC_VACUOLAR_MEMBRANE, NKX25_02, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_POSITIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS
GO Biological Process (39): retinoid metabolic process (GO:0001523), astrocyte activation involved in immune response (GO:0002265), lipid metabolic process (GO:0006629), receptor-mediated endocytosis (GO:0006898), phagocytosis (GO:0006909), lysosomal transport (GO:0007041), enzyme-linked receptor protein signaling pathway (GO:0007167), negative regulation of gene expression (GO:0010629), regulation of extracellular matrix disassembly (GO:0010715), positive regulation of cholesterol efflux (GO:0010875), negative regulation of smooth muscle cell migration (GO:0014912), negative regulation of Wnt signaling pathway (GO:0030178), receptor internalization (GO:0031623), positive regulation of lipid transport (GO:0032370), regulation of actin cytoskeleton organization (GO:0032956), aorta morphogenesis (GO:0035909), lipoprotein transport (GO:0042953), apoptotic cell clearance (GO:0043277), transcytosis (GO:0045056), positive regulation of endocytosis (GO:0045807), negative regulation of SMAD protein signal transduction (GO:0060392), amyloid-beta clearance (GO:0097242), amyloid-beta clearance by transcytosis (GO:0150093), amyloid-beta clearance by cellular catabolic process (GO:0150094), transport across blood-brain barrier (GO:0150104), positive regulation of amyloid-beta clearance (GO:1900223), regulation of extracellular matrix organization (GO:1903053), positive regulation of reverse cholesterol transport (GO:1903064), positive regulation of protein localization to plasma membrane (GO:1903078), positive regulation of transcytosis (GO:1904300), cellular response to amyloid-beta (GO:1904646), positive regulation of lysosomal protein catabolic process (GO:1905167), negative regulation of platelet-derived growth factor receptor-beta signaling pathway (GO:2000587), endocytosis (GO:0006897), negative regulation of macromolecule metabolic process (GO:0010605), vesicle-mediated transport (GO:0016192), regulation of endocytosis (GO:0030100), positive regulation of transport (GO:0051050), regulation of protein metabolic process (GO:0051246)
GO Molecular Function (16): amyloid-beta binding (GO:0001540), RNA binding (GO:0003723), low-density lipoprotein particle receptor activity (GO:0005041), scavenger receptor activity (GO:0005044), calcium ion binding (GO:0005509), alpha-2 macroglobulin receptor activity (GO:0016964), apolipoprotein receptor activity (GO:0030226), clathrin heavy chain binding (GO:0032050), apolipoprotein binding (GO:0034185), signaling receptor activity (GO:0038023), cargo receptor activity (GO:0038024), heparan sulfate proteoglycan binding (GO:0043395), protein-containing complex binding (GO:0044877), lipoprotein particle receptor binding (GO:0070325), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (17): nucleolus (GO:0005730), lysosomal membrane (GO:0005765), early endosome (GO:0005769), microtubule organizing center (GO:0005815), cytosol (GO:0005829), plasma membrane (GO:0005886), clathrin-coated pit (GO:0005905), focal adhesion (GO:0005925), membrane (GO:0016020), basolateral plasma membrane (GO:0016323), endocytic vesicle membrane (GO:0030666), signaling receptor complex (GO:0043235), plasma membrane protein complex (GO:0098797), nucleus (GO:0005634), cytoplasm (GO:0005737), Golgi apparatus (GO:0005794), cytoskeleton (GO:0005856)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Binding and Uptake of Ligands by Scavenger Receptors | 1 |
| Visual phototransduction | 1 |
| Metabolism of fat-soluble vitamins | 1 |
| Metabolism | 1 |
| Vesicle-mediated transport | 1 |
| Sensory Perception | 1 |
| Metabolism of vitamins and cofactors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| endocytosis | 3 |
| cargo receptor activity | 3 |
| positive regulation of transport | 2 |
| vesicle-mediated transport | 2 |
| binding | 2 |
| intracellular membraneless organelle | 2 |
| cytoplasm | 2 |
| membrane | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| diterpenoid metabolic process | 1 |
| cell activation involved in immune response | 1 |
| immune response | 1 |
| astrocyte activation | 1 |
| primary metabolic process | 1 |
| vacuolar transport | 1 |
| cell surface receptor signaling pathway | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| negative regulation of macromolecule biosynthetic process | 1 |
| extracellular matrix disassembly | 1 |
| regulation of extracellular matrix organization | 1 |
| regulation of cholesterol efflux | 1 |
| positive regulation of cholesterol transport | 1 |
| cholesterol efflux | 1 |
| smooth muscle cell migration | 1 |
| regulation of smooth muscle cell migration | 1 |
| negative regulation of cell migration | 1 |
| negative regulation of signal transduction | 1 |
| Wnt signaling pathway | 1 |
| regulation of Wnt signaling pathway | 1 |
| receptor-mediated endocytosis | 1 |
| lipid transport | 1 |
| regulation of lipid transport | 1 |
| positive regulation of lipid localization | 1 |
| actin cytoskeleton organization | 1 |
| regulation of actin filament-based process | 1 |
| regulation of cytoskeleton organization | 1 |
| aorta development | 1 |
Protein interactions and networks
STRING
2292 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LRP1 | CALR | P27797 | 998 |
| LRP1 | A2M | P01023 | 997 |
| LRP1 | APOE | P02649 | 997 |
| LRP1 | HSP90B1 | P14625 | 996 |
| LRP1 | HSPA4 | P34932 | 991 |
| LRP1 | HSP90AA1 | P07900 | 990 |
| LRP1 | HSP90AB1 | P08238 | 990 |
| LRP1 | HPX | P02790 | 989 |
| LRP1 | SERPINE1 | P05121 | 984 |
| LRP1 | PLAT | P00750 | 974 |
| LRP1 | APP | P05067 | 963 |
| LRP1 | ANXA6 | P08133 | 931 |
| LRP1 | LTF | P02788 | 902 |
| LRP1 | MMP9 | P14780 | 890 |
| LRP1 | SFTPD | P35247 | 890 |
IntAct
105 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LRPAP1 | LRP1 | psi-mi:“MI:0407”(direct interaction) | 0.810 |
| LRP1 | LRPAP1 | psi-mi:“MI:0407”(direct interaction) | 0.810 |
| C1QA | C1QB | psi-mi:“MI:0915”(physical association) | 0.810 |
| LRP1 | LRPAP1 | psi-mi:“MI:0915”(physical association) | 0.810 |
| LRP1 | APOE | psi-mi:“MI:0407”(direct interaction) | 0.780 |
| APOE | LRP1 | psi-mi:“MI:0914”(association) | 0.780 |
| APOE | LRP1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| APOE | LRP1 | psi-mi:“MI:0407”(direct interaction) | 0.780 |
| LRP1 | APOE | psi-mi:“MI:0915”(physical association) | 0.780 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| APBB1 | LRP1 | psi-mi:“MI:0407”(direct interaction) | 0.700 |
| LRP1 | APBB1 | psi-mi:“MI:0915”(physical association) | 0.700 |
| APOE | APOE | psi-mi:“MI:0915”(physical association) | 0.640 |
BioGRID (265): LRP1 (Two-hybrid), LRP1 (Affinity Capture-MS), LRP1 (Affinity Capture-MS), LRP1 (Affinity Capture-MS), LRP1 (Affinity Capture-MS), LRP1 (PCA), LRP1 (Affinity Capture-MS), LRP1 (Affinity Capture-MS), KCTD18 (Affinity Capture-MS), LRP1 (Affinity Capture-MS), TNKS2 (Affinity Capture-MS), TNKS (Affinity Capture-MS), FOXF2 (Affinity Capture-MS), BCKDHB (Affinity Capture-MS), TUBB8 (Affinity Capture-MS)
ESM2 similar proteins: A2ARV4, C0HL13, F1RWC3, G3V928, O57409, O60494, O70244, P01130, P01131, P01132, P07522, P20063, P35950, P35951, P35952, P35953, P41413, P46023, P56677, P78504, P98155, P98156, P98157, P98158, P98163, P98164, P98165, P98166, Q04592, Q04833, Q07954, Q0IIH7, Q20176, Q28832, Q63722, Q6X0I2, Q90Y57, Q91ZX7, Q92673, Q92824
Diamond homologs: A2AR95, A2ARV4, A4IHY6, C0HL13, E9Q6D8, G3V928, O75074, O75197, O75581, O88204, O88307, O88572, P0DSP1, P13671, P35953, P56677, P61134, P61135, P86091, P98153, P98154, P98155, P98156, P98157, P98158, P98160, P98163, P98164, P98165, P98166, P98167, Q04833, Q06561, Q07954, Q0IIH7, Q14114, Q28832, Q29RU4, Q5HZW5, Q5R662
SIGNOR signaling
13 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SRC | “up-regulates activity” | LRP1 | phosphorylation |
| PRKCA | up-regulates | LRP1 | phosphorylation |
| SRC | up-regulates | LRP1 | phosphorylation |
| SREBF2 | “down-regulates quantity by repression” | LRP1 | “transcriptional regulation” |
| SREBF1 | “down-regulates quantity by repression” | LRP1 | “transcriptional regulation” |
| hsa-miR-205-5p | “down-regulates quantity by repression” | LRP1 | “post transcriptional regulation” |
| F2 | up-regulates | LRP1 | binding |
| SERPINA1 | up-regulates | LRP1 | binding |
| SERPINC1 | up-regulates | LRP1 | binding |
| PRKACA | “up-regulates activity” | LRP1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 80 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by ERBB4 | 5 | 24.7× | 6e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
756 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 1 |
| Uncertain significance | 454 |
| Likely benign | 110 |
| Benign | 89 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 132834 | NM_002332.3(LRP1):c.3734A>G (p.Lys1245Arg) | Pathogenic |
| 2691743 | NM_002332.3(LRP1):c.5347C>T (p.Arg1783Trp) | Pathogenic |
| 2691744 | NM_002332.3(LRP1):c.6386C>A (p.Thr2129Lys) | Pathogenic |
| 2691745 | NM_002332.3(LRP1):c.670C>G (p.Pro224Ala) | Pathogenic |
| 2691746 | NM_002332.3(LRP1):c.2798-4C>A | Pathogenic |
| 1321297 | NM_002332.3(LRP1):c.4966+1G>T | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
30344 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:57138526:G:C | W45C | 1.000 |
| 12:57138526:G:T | W45C | 1.000 |
| 12:57138530:T:A | C47S | 1.000 |
| 12:57138531:G:C | C47S | 1.000 |
| 12:57154616:T:A | V381D | 1.000 |
| 12:57154618:T:G | Y382D | 1.000 |
| 12:57154621:T:A | W383R | 1.000 |
| 12:57154621:T:C | W383R | 1.000 |
| 12:57154623:G:C | W383C | 1.000 |
| 12:57154623:G:T | W383C | 1.000 |
| 12:57156836:T:C | C493R | 1.000 |
| 12:57156838:C:G | C493W | 1.000 |
| 12:57156875:T:A | C506S | 1.000 |
| 12:57156875:T:C | C506R | 1.000 |
| 12:57156876:G:C | C506S | 1.000 |
| 12:57156914:T:A | C519S | 1.000 |
| 12:57156915:G:C | C519S | 1.000 |
| 12:57158594:G:C | R585P | 1.000 |
| 12:57160914:G:C | W667C | 1.000 |
| 12:57160914:G:T | W667C | 1.000 |
| 12:57161011:T:A | W700R | 1.000 |
| 12:57161011:T:C | W700R | 1.000 |
| 12:57161015:C:A | P701H | 1.000 |
| 12:57161019:T:A | N702K | 1.000 |
| 12:57161019:T:G | N702K | 1.000 |
| 12:57161020:G:T | G703W | 1.000 |
| 12:57161021:G:A | G703E | 1.000 |
| 12:57162350:T:C | F746L | 1.000 |
| 12:57162352:T:A | F746L | 1.000 |
| 12:57162352:T:G | F746L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000022318 (12:57209049 G>A), RS1000029715 (12:57166522 C>T), RS1000082331 (12:57166942 C>G), RS1000094720 (12:57165064 A>G), RS1000135235 (12:57209355 C>A,T), RS1000139614 (12:57209336 C>A,T), RS1000155472 (12:57147296 C>G), RS1000171043 (12:57141237 G>A), RS1000309522 (12:57140923 G>A), RS1000313736 (12:57160448 T>C,G), RS1000325205 (12:57203889 G>T), RS1000361530 (12:57153077 T>G), RS1000430142 (12:57174108 G>A), RS1000471952 (12:57146760 C>A,G,T), RS1000570746 (12:57146904 C>A)
Disease associations
OMIM: gene MIM:107770 | disease phenotypes: MIM:209700, MIM:604093, MIM:620690, MIM:614429, MIM:605067
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental dysplasia of the hip 3 | Moderate | Autosomal dominant |
| keratosis pilaris atrophicans | Moderate | Autosomal recessive |
| keratosis follicularis spinulosa decalvans | Supportive | Autosomal dominant |
| atrophoderma vermiculata | Supportive | Autosomal recessive |
| schizophrenia | Limited | Unknown |
Mondo (10): keratosis pilaris (MONDO:0021036), atrophoderma vermiculata (MONDO:0008849), prostate cancer (MONDO:0008315), keratosis pilaris atrophicans (MONDO:0018855), developmental dysplasia of the hip 3 (MONDO:0958037), neuromuscular disease (MONDO:0019056), ventricular septal defect (MONDO:0002070), tricuspid atresia (MONDO:0011514), schizophrenia (MONDO:0005090), keratosis follicularis spinulosa decalvans (MONDO:0000136)
Orphanet (7): Ulerythema ophryogenesis (Orphanet:3406), Atrophoderma vermiculata (Orphanet:79100), Familial prostate cancer (Orphanet:1331), Keratosis pilaris atrophicans (Orphanet:498), Neuromuscular disease (Orphanet:68381), Tricuspid atresia (Orphanet:1209), NON RARE IN EUROPE: Ventricular septal defect (Orphanet:1480)
HPO phenotypes
2 total (2 of 2 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0001629 | Ventricular septal defect |
| HP:0011662 | Tricuspid atresia |
GWAS associations
52 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000755_15 | HDL cholesterol | 2.000000e-08 |
| GCST000758_31 | Triglycerides | 4.000000e-10 |
| GCST001105_3 | Migraine | 4.000000e-09 |
| GCST001248_4 | Pulmonary function | 1.000000e-08 |
| GCST001312_1 | Abdominal aortic aneurysm | 5.000000e-10 |
| GCST001563_5 | Migraine | 3.000000e-08 |
| GCST001784_6 | Pulmonary function (smoking interaction) | 8.000000e-06 |
| GCST002078_25 | Migraine without aura | 1.000000e-10 |
| GCST002079_15 | Migraine - clinic-based | 1.000000e-06 |
| GCST002081_59 | Migraine | 4.000000e-19 |
| GCST002216_33 | Triglycerides | 9.000000e-14 |
| GCST002223_15 | HDL cholesterol | 2.000000e-13 |
| GCST002539_15 | Schizophrenia | 2.000000e-12 |
| GCST002700_2 | Cervical artery dissection | 3.000000e-07 |
| GCST002897_3 | Triglycerides | 1.000000e-08 |
| GCST003720_17 | Migraine | 1.000000e-09 |
| GCST003720_20 | Migraine | 6.000000e-49 |
| GCST003721_7 | Migraine without aura | 4.000000e-16 |
| GCST003877_6 | Abdominal aortic aneurysm | 6.000000e-07 |
| GCST003986_26 | Migraine | 6.000000e-36 |
| GCST003987_18 | Asthma | 1.000000e-10 |
| GCST004232_55 | HDL cholesterol levels | 1.000000e-13 |
| GCST004237_44 | Triglyceride levels | 1.000000e-13 |
| GCST004521_233 | Autism spectrum disorder or schizophrenia | 4.000000e-10 |
| GCST004787_52 | Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease) | 3.000000e-06 |
| GCST004861_11 | Itch intensity from mosquito bite | 3.000000e-13 |
| GCST005196_65 | Coronary artery disease | 6.000000e-08 |
| GCST005196_66 | Coronary artery disease | 5.000000e-06 |
| GCST005212_34 | Asthma | 4.000000e-09 |
| GCST005337_1 | Headache | 5.000000e-47 |
EFO canonical traits (13, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0003892 | pulmonary function measurement |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0008377 | mosquito bite reaction itch intensity measurement |
| EFO:0005763 | pulse pressure measurement |
| EFO:0009718 | peak expiratory flow |
| EFO:0009938 | Anilide use measurement |
| EFO:0009939 | Antimigraine preparation use measurement |
| EFO:1002011 | adult onset asthma |
| EFO:0004340 | body mass index |
| EFO:0010820 | spontaneous coronary artery dissection |
| EFO:0004980 | appendicular lean mass |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006345 | Heart Septal Defects, Ventricular | C14.240.400.560.540; C14.280.400.560.540; C16.131.240.400.560.540 |
| D009468 | Neuromuscular Diseases | C10.668 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| D018785 | Tricuspid Atresia | C14.240.400.920; C14.280.400.920; C14.280.484.845; C16.131.240.400.920 |
| C537412 | Burnett Schwartz Berberian syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4630884 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
80 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases abundance, increases expression, affects cotreatment, decreases expression | 4 |
| bisphenol A | decreases methylation, increases expression, decreases expression, affects cotreatment, increases methylation | 3 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 3 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 3 |
| Arsenic | affects methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Cisplatin | affects cotreatment, increases expression, decreases reaction | 2 |
| Dexamethasone | decreases expression, affects cotreatment | 2 |
| Hydrogen Peroxide | affects expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| afuresertib | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | decreases expression, affects cotreatment | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | increases expression | 1 |
| butylphen | increases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| cobaltous chloride | affects cotreatment, increases expression | 1 |
| tanshinone | decreases expression, decreases reaction, increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| cupric chloride | decreases expression | 1 |
| very low density lipoprotein triglyceride | increases expression, increases reaction | 1 |
| nivalenol | decreases expression | 1 |
| tesmilifene | decreases expression | 1 |
Cellosaurus cell lines
6 cell lines: 5 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8PF | Ubigene HCT 116 LRP1 KO | Cancer cell line | Male |
| CVCL_D9IS | Ubigene HEK293 LRP1 KO | Transformed cell line | Female |
| CVCL_SV84 | HAP1 LRP1 (-) 1 | Cancer cell line | Male |
| CVCL_SV85 | HAP1 LRP1 (-) 2 | Cancer cell line | Male |
| CVCL_SV86 | HAP1 LRP1 (-) 3 | Cancer cell line | Male |
| CVCL_SV87 | HAP1 LRP1 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | PHASE4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | PHASE4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | PHASE4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | PHASE4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
Related Atlas pages
- Associated diseases: developmental dysplasia of the hip 3, schizophrenia, keratosis pilaris atrophicans, keratosis follicularis spinulosa decalvans, X-linked, atrophoderma vermiculata
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): abdominal aortic aneurysm, atrophoderma vermiculata, cervical artery dissection, developmental dysplasia of the hip 3, keratosis follicularis spinulosa decalvans, keratosis pilaris, keratosis pilaris atrophicans, migraine disorder, migraine without aura, susceptibility to, 4, Moyamoya disease, neuromuscular disease, schizophrenia, tricuspid atresia, ventricular septal defect