LRP10
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Also known as DKFZP564C1940MGC8675LRP9MST087MSTP087
Summary
LRP10 (LDL receptor related protein 10, HGNC:14553) is a protein-coding gene on chromosome 14q11.2, encoding Low-density lipoprotein receptor-related protein 10 (Q7Z4F1). Probable receptor, which is involved in the internalization of lipophilic molecules and/or signal transduction.
This gene encodes a low density lipoprotein receptor family protein. A similar protein in mouse is thought to play a role in the uptake of apolipoprotein E-containing lipoproteins.
Source: NCBI Gene 26020 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 127 total
- MANE Select transcript:
NM_014045
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14553 |
| Approved symbol | LRP10 |
| Name | LDL receptor related protein 10 |
| Location | 14q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZP564C1940, MGC8675, LRP9, MST087, MSTP087 |
| Ensembl gene | ENSG00000197324 |
| Ensembl biotype | protein_coding |
| OMIM | 609921 |
| Entrez | 26020 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 14 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000359591, ENST00000470660, ENST00000546834, ENST00000551466, ENST00000553002, ENST00000908030, ENST00000908031, ENST00000908032, ENST00000908033, ENST00000908034, ENST00000908035, ENST00000912553, ENST00000912554, ENST00000912555, ENST00000960874, ENST00000960875
RefSeq mRNA: 2 — MANE Select: NM_014045
NM_001329226, NM_014045
CCDS: CCDS86372, CCDS9578
Canonical transcript exons
ENST00000359591 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001031392 | 22876689 | 22876818 |
| ENSE00001099425 | 22873311 | 22873446 |
| ENSE00001150047 | 22875355 | 22876372 |
| ENSE00001150071 | 22872738 | 22872782 |
| ENSE00001258700 | 22876940 | 22881713 |
| ENSE00001258705 | 22871740 | 22872337 |
| ENSE00003543153 | 22875055 | 22875245 |
Expression profiles
Bgee: expression breadth ubiquitous, 284 present calls, max score 99.25.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 93.2966 / max 1503.2833, expressed in 1821 samples.
FANTOM5 promoters (16 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 138849 | 45.4072 | 1807 |
| 138848 | 28.1873 | 1800 |
| 138856 | 3.6319 | 1348 |
| 138852 | 2.7570 | 1137 |
| 138850 | 2.6607 | 1189 |
| 138860 | 2.6578 | 1092 |
| 138851 | 2.1516 | 1094 |
| 138855 | 2.0224 | 1055 |
| 138859 | 1.2086 | 713 |
| 138858 | 0.6753 | 421 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 99.25 | gold quality |
| decidua | UBERON:0002450 | 98.60 | gold quality |
| right coronary artery | UBERON:0001625 | 98.41 | gold quality |
| pancreatic ductal cell | CL:0002079 | 98.40 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.38 | gold quality |
| popliteal artery | UBERON:0002250 | 98.23 | gold quality |
| tibial artery | UBERON:0007610 | 98.23 | gold quality |
| aorta | UBERON:0000947 | 98.20 | gold quality |
| gall bladder | UBERON:0002110 | 98.18 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 98.18 | gold quality |
| thoracic aorta | UBERON:0001515 | 98.16 | gold quality |
| ascending aorta | UBERON:0001496 | 98.13 | gold quality |
| type B pancreatic cell | CL:0000169 | 98.08 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 98.08 | gold quality |
| coronary artery | UBERON:0001621 | 97.85 | gold quality |
| left coronary artery | UBERON:0001626 | 97.84 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 97.81 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.80 | gold quality |
| gingiva | UBERON:0001828 | 97.77 | gold quality |
| blood | UBERON:0000178 | 97.74 | gold quality |
| saphenous vein | UBERON:0007318 | 97.67 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 97.66 | gold quality |
| esophagus | UBERON:0001043 | 97.65 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.64 | gold quality |
| gingival epithelium | UBERON:0001949 | 97.61 | gold quality |
| penis | UBERON:0000989 | 97.60 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 97.56 | gold quality |
| urethra | UBERON:0000057 | 97.54 | gold quality |
| lower esophagus | UBERON:0013473 | 97.51 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 97.50 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 18)
- LRP10 may interfere with the formation of the beta-catenin/TCF complex and/or its binding to target DNA in the nucleus, and that the extracellular domain of LRP10 is critical for inhibition of the canonical Wnt/beta-catenin signaling pathway. (PMID:20093106)
- Increased expression of LRP10 in human neuroblastoma SH-SY5Y cells induces the accumulation of mature APP in the Golgi and reduces its presence at the cell surface and its processing into Abeta. (PMID:22734645)
- In Mayer-Rokitansky-Kuster-Hauser syndrome in monoztgotic twins, LRP10 was identified as one of the candidate genes. (PMID:25492683)
- Our findings implicate LRP10 gene defects in the development of inherited forms of alpha-synucleinopathies (PMID:29887161)
- Genetic screening of the LRP10 gene in our cohort may provide independent, albeit limited, evidence for the pathogenicity of LRP10 in familial Parkinson disease. (PMID:30964957)
- p.Tyr307Asn variant is pathogenic for PD and PDD in the southwest Dutch population. (PMID:31147221)
- Analysis of p.Tyr307Asn variant in the LRP10 gene in Parkinson’s disease in southern Spain. (PMID:32409252)
- LRP10 variants in progressive supranuclear palsy. (PMID:32527607)
- Clinical and Pathological Phenotypes of LRP10 Variant Carriers with Dementia. (PMID:32597809)
- Rare, pathogenic variants in LRP10 are associated with amyotrophic lateral sclerosis in patients from mainland China. (PMID:32690342)
- Mutation analysis of LRP10 in a large Chinese familial Parkinson disease cohort. (PMID:32950273)
- LRP10 Mutations May Correlate with Sporadic Parkinson’s Disease in China. (PMID:33118139)
- LRP10 interacts with SORL1 in the intracellular vesicle trafficking pathway in non-neuronal brain cells and localises to Lewy bodies in Parkinson’s disease and dementia with Lewy bodies. (PMID:33913039)
- Screening of LRP10 mutations in Parkinson’s disease patients from Italy. (PMID:34216936)
- Role of LRP10 in Parkinson’s disease in a Taiwanese cohort. (PMID:34246039)
- Genetic analysis of the LRP10 gene in Chinese patients with Parkinson’s disease. (PMID:36434476)
- LRP10 and alpha-synuclein transmission in Lewy body diseases. (PMID:38315424)
- Lrp10 suppresses IL7R limiting CD8 T cell homeostatic expansion and anti-tumor immunity. (PMID:38956225)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lrp10 | ENSDARG00000054539 |
| mus_musculus | Lrp10 | ENSMUSG00000022175 |
| rattus_norvegicus | Lrp10 | ENSRNOG00000011592 |
| drosophila_melanogaster | arr | FBGN0000119 |
Paralogs (14): LRP6 (ENSG00000070018), LRP2 (ENSG00000081479), NID2 (ENSG00000087303), NID1 (ENSG00000116962), LRP1 (ENSG00000123384), LDLR (ENSG00000130164), LRP3 (ENSG00000130881), LRP4 (ENSG00000134569), EGF (ENSG00000138798), LRP12 (ENSG00000147650), VLDLR (ENSG00000147852), LRP8 (ENSG00000157193), LRP5 (ENSG00000162337), LRP1B (ENSG00000168702)
Protein
Protein identifiers
Low-density lipoprotein receptor-related protein 10 — Q7Z4F1 (reviewed: Q7Z4F1)
All UniProt accessions (2): Q7Z4F1, H0YHW7
UniProt curated annotations — full annotation on UniProt →
Function. Probable receptor, which is involved in the internalization of lipophilic molecules and/or signal transduction. May be involved in the uptake of lipoprotein APOE in liver.
Subcellular location. Membrane. Coated pit.
Tissue specificity. Expressed in blood leukocyte, lung, placenta, small intestine, liver, kidney, spleen, thymus, colon, skeletal muscle and heart.
Similarity. Belongs to the LDLR family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q7Z4F1-1 | 1 | yes |
| Q7Z4F1-2 | 2 |
RefSeq proteins (2): NP_001316155, NP_054764* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000859 | CUB_dom | Domain |
| IPR002172 | LDrepeatLR_classA_rpt | Repeat |
| IPR023415 | LDLR_class-A_CS | Conserved_site |
| IPR035914 | Sperma_CUB_dom_sf | Homologous_superfamily |
| IPR036055 | LDL_receptor-like_sf | Homologous_superfamily |
| IPR050685 | LDLR | Family |
Pfam: PF00057, PF00431
UniProt features (40 total): disulfide bond 15, domain 6, glycosylation site 4, sequence conflict 3, compositionally biased region 2, topological domain 2, sequence variant 2, signal peptide 1, chain 1, region of interest 1, modified residue 1, transmembrane region 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7Z4F1-F1 | 67.84 | 0.17 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 596
Disulfide bonds (15): 28–57, 80–98, 140–152, 147–165, 159–174, 192–220, 308–331, 315–344, 338–353, 356–374, 363–387, 381–396, 399–411, 406–424, 418–433
Glycosylation sites (4): 56, 111, 193, 299
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-975634 | Retinoid metabolism and transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-196854 | Metabolism of vitamins and cofactors |
| R-HSA-2187338 | Visual phototransduction |
| R-HSA-6806667 | Metabolism of fat-soluble vitamins |
| R-HSA-9709957 | Sensory Perception |
MSigDB gene sets: 195 (showing top):
MYOGENIN_Q6, AREB6_01, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_EAR_DEVELOPMENT, BLALOCK_ALZHEIMERS_DISEASE_UP, KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN, GOBP_LIPID_METABOLIC_PROCESS, AACTTT_UNKNOWN, E12_Q6, GOBP_SENSORY_ORGAN_DEVELOPMENT, ACEVEDO_LIVER_CANCER_UP, GOBP_IMPORT_INTO_CELL, GOBP_LIPID_LOCALIZATION, GOBP_ENDOCYTOSIS, ACACTCC_MIR122A
GO Biological Process (5): lipid metabolic process (GO:0006629), lipid transport (GO:0006869), endocytosis (GO:0006897), inner ear development (GO:0048839), vesicle-mediated transport (GO:0016192)
GO Molecular Function (2): low-density lipoprotein particle receptor activity (GO:0005041), protein binding (GO:0005515)
GO Cellular Component (3): plasma membrane (GO:0005886), clathrin-coated pit (GO:0005905), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Visual phototransduction | 1 |
| Metabolism of fat-soluble vitamins | 1 |
| Metabolism | 1 |
| Sensory Perception | 1 |
| Metabolism of vitamins and cofactors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transport | 2 |
| membrane | 2 |
| primary metabolic process | 1 |
| lipid localization | 1 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| ear development | 1 |
| anatomical structure development | 1 |
| cellular process | 1 |
| low-density lipoprotein particle binding | 1 |
| lipoprotein particle receptor activity | 1 |
| binding | 1 |
| cell periphery | 1 |
| endomembrane system | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
898 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LRP10 | APOE | P02649 | 797 |
| LRP10 | APP | P05067 | 612 |
| LRP10 | TMEM230 | Q96A57 | 599 |
| LRP10 | FAM163A | Q96GL9 | 553 |
| LRP10 | PRKN | O60260 | 491 |
| LRP10 | ZFAND4 | Q86XD8 | 456 |
| LRP10 | LRP11 | Q86VZ4 | 434 |
| LRP10 | LRCH1 | Q9Y2L9 | 427 |
| LRP10 | EIF3K | Q9UBQ5 | 426 |
| LRP10 | DNAJC13 | O75165 | 420 |
| LRP10 | VLDLR | P98155 | 411 |
| LRP10 | SLC14A1 | Q13336 | 398 |
| LRP10 | VPS13C | Q709C8 | 398 |
| LRP10 | AXIN1 | O15169 | 396 |
| LRP10 | GSK3B | P49841 | 394 |
IntAct
199 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC20A1 | LIN7A | psi-mi:“MI:0914”(association) | 0.640 |
| P2RX4 | FAM20B | psi-mi:“MI:0914”(association) | 0.640 |
| PDGFRB | PIK3R2 | psi-mi:“MI:0914”(association) | 0.610 |
| BCL2L2 | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MIP | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | EBP | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| LRP10 | TMEM179B | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | MGST3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | BCL2L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NOTO | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | TMEM237 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC14A2 | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | ST6GALNAC6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC10A1 | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | MRPS18B | psi-mi:“MI:0915”(physical association) | 0.560 |
| EBP | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLEKHO1 | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | CISD2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| GORAB | LRP10 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (163): LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS), LRP10 (Affinity Capture-MS)
ESM2 similar proteins: A0A1B0GTW7, A0A1D5NSK0, A0A1L8HYT7, A0A286YEC0, D3ZT86, D3ZWJ9, D4A929, F8W3R9, G7PWZ3, I6M4H4, O08852, O43157, O43278, O75074, O88204, P17813, P49000, P59383, Q04912, Q17R55, Q499Z3, Q4R3B7, Q4TUC0, Q5ND34, Q62190, Q63961, Q6AXX1, Q76MJ5, Q7TN88, Q7TQH7, Q7Z442, Q7Z4F1, Q80W87, Q80YN4, Q866Y3, Q86VZ4, Q8BHW9, Q8BMN4, Q8BYI8, Q8BZT7
Diamond homologs: A2VEC9, E9Q6D8, G3V928, O57382, O57460, O70244, O75074, O88204, O88307, P0DSP1, P13497, P42674, P48740, P98063, P98064, P98070, P98157, P98165, Q04833, Q07954, Q20176, Q4A3R3, Q5R662, Q62381, Q6F3F9, Q7M761, Q7RTZ1, Q7TQH7, Q7Z407, Q7Z408, Q7Z4F1, Q80T79, Q811M5, Q86SQ4, Q8BQH6, Q8BUJ9, Q8CHN8, Q8JI28, Q8K1S7, Q8NCW0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
127 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 90 |
| Likely benign | 14 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
990 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:22873306:TCCA:T | acceptor_loss | 1.0000 |
| 14:22873307:CCA:C | acceptor_loss | 1.0000 |
| 14:22873308:CA:C | acceptor_loss | 1.0000 |
| 14:22873309:A:AC | acceptor_loss | 1.0000 |
| 14:22873309:A:AG | acceptor_gain | 1.0000 |
| 14:22873309:AGCTT:A | acceptor_gain | 1.0000 |
| 14:22873310:G:GT | acceptor_gain | 1.0000 |
| 14:22873310:GC:G | acceptor_gain | 1.0000 |
| 14:22873310:GCTT:G | acceptor_gain | 1.0000 |
| 14:22873310:GCTTG:G | acceptor_gain | 1.0000 |
| 14:22873443:TCAGG:T | donor_loss | 1.0000 |
| 14:22873444:CAGG:C | donor_loss | 1.0000 |
| 14:22873445:AGGT:A | donor_loss | 1.0000 |
| 14:22873447:G:A | donor_loss | 1.0000 |
| 14:22873448:T:G | donor_loss | 1.0000 |
| 14:22875052:TAG:T | acceptor_loss | 1.0000 |
| 14:22875053:A:AC | acceptor_loss | 1.0000 |
| 14:22875190:C:G | donor_gain | 1.0000 |
| 14:22875241:CCAAG:C | donor_loss | 1.0000 |
| 14:22875242:CAAGG:C | donor_loss | 1.0000 |
| 14:22875243:AAG:A | donor_loss | 1.0000 |
| 14:22875244:AGGTA:A | donor_loss | 1.0000 |
| 14:22875246:GTAG:G | donor_loss | 1.0000 |
| 14:22875247:T:G | donor_loss | 1.0000 |
| 14:22876687:A:AG | acceptor_gain | 1.0000 |
| 14:22876688:G:GG | acceptor_gain | 1.0000 |
| 14:22876688:GC:G | acceptor_gain | 1.0000 |
| 14:22876814:ATGAT:A | donor_gain | 1.0000 |
| 14:22876815:TGAT:T | donor_gain | 1.0000 |
| 14:22876816:GAT:G | donor_gain | 1.0000 |
AlphaMissense
4523 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:22875974:G:C | W342C | 1.000 |
| 14:22875974:G:T | W342C | 1.000 |
| 14:22876159:T:G | F404C | 1.000 |
| 14:22876196:G:C | W416C | 1.000 |
| 14:22876196:G:T | W416C | 1.000 |
| 14:22876218:T:A | C424S | 1.000 |
| 14:22876219:G:A | C424Y | 1.000 |
| 14:22876219:G:C | C424S | 1.000 |
| 14:22876293:A:C | S449R | 1.000 |
| 14:22876295:C:A | S449R | 1.000 |
| 14:22876295:C:G | S449R | 1.000 |
| 14:22876760:T:C | L499P | 1.000 |
| 14:22876763:T:A | I500N | 1.000 |
| 14:22876796:T:G | F511C | 1.000 |
| 14:22875614:G:C | W222C | 0.999 |
| 14:22875614:G:T | W222C | 0.999 |
| 14:22875655:T:C | F236S | 0.999 |
| 14:22875840:T:C | F298L | 0.999 |
| 14:22875841:T:C | F298S | 0.999 |
| 14:22875841:T:G | F298C | 0.999 |
| 14:22875842:C:A | F298L | 0.999 |
| 14:22875842:C:G | F298L | 0.999 |
| 14:22875846:G:C | A300P | 0.999 |
| 14:22875847:C:A | A300D | 0.999 |
| 14:22875852:T:G | Y302D | 0.999 |
| 14:22875978:T:A | C344S | 0.999 |
| 14:22875978:T:C | C344R | 0.999 |
| 14:22875979:G:A | C344Y | 0.999 |
| 14:22875979:G:C | C344S | 0.999 |
| 14:22875979:G:T | C344F | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000268552 (14:22875064 G>A,C), RS1000587796 (14:22876543 G>C), RS1000942014 (14:22879681 T>C), RS1001287870 (14:22870323 G>A), RS1001308106 (14:22881252 G>A,C), RS1001371508 (14:22880041 G>A), RS1001479780 (14:22875287 C>T), RS1001490526 (14:22875766 C>A,G,T), RS1001799756 (14:22869979 C>A), RS1001815877 (14:22882202 G>C), RS1002101220 (14:22881903 C>G,T), RS1002282880 (14:22870109 T>C), RS1003126226 (14:22876449 G>A), RS1003158657 (14:22876739 C>G,T), RS1003492137 (14:22878123 C>A)
Disease associations
OMIM: gene MIM:609921 | disease phenotypes: MIM:600057
GenCC curated gene-disease
Mondo (2): myoepithelial tumor (MONDO:0002380), bladder exstrophy-epispadias-cloacal exstrophy complex (MONDO:0700039)
Orphanet (1): Classic bladder exstrophy (Orphanet:93930)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010483_2 | Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment | 5.000000e-06 |
| GCST90002398_216 | Neutrophil count | 3.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006919 | cardiovascular event measurement |
| EFO:0004833 | neutrophil count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009208 | Myoepithelioma | C04.557.435.585 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, increases methylation | 10 |
| Benzo(a)pyrene | increases expression | 5 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Acetaminophen | decreases expression, increases expression | 3 |
| Tretinoin | increases expression | 3 |
| Aflatoxin B1 | affects expression, increases expression | 3 |
| sodium arsenite | increases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| sulforaphane | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| cupric chloride | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| MT19c compound | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Atrazine | increases expression | 1 |
| Azathioprine | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D0HG | LCPHi003-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
5 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03600649 | PHASE1 | UNKNOWN | Clinical Trial of SP-2577 (Seclidemstat) in Patients With Relapsed or Refractory Ewing or Ewing-related Sarcomas |
| NCT05266196 | PHASE1/PHASE2 | UNKNOWN | A Rollover Protocol to Allow for Continued Access to the LSD1 Inhibitor Seclidemstat (SP-2577) |
| NCT06239272 | PHASE1/PHASE2 | RECRUITING | NRSTS2021, A Risk Adapted Study Evaluating Maintenance Pazopanib, Limited Margin, Dose-Escalated Radiation Therapy and Selinexor in Non-Rhabdomyosarcoma Soft Tissue Sarcoma (NRSTS) |
| NCT06625190 | PHASE1/PHASE2 | RECRUITING | Alpha/Beta T and B Cell Depletion With Zoledronic Acid for Solid Tumors |
| NCT06244420 | Not specified | COMPLETED | Malignant Myoepithelioma of Bone and Soft Tissues: Diagnostic Imaging and Histology in Relation to Prognosis |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bladder exstrophy-epispadias-cloacal exstrophy complex, myoepithelial tumor, stroke disorder