LRRC10

gene
On this page

Also known as HRLRRPLRRC10A

Summary

LRRC10 (leucine rich repeat containing 10, HGNC:20264) is a protein-coding gene on chromosome 12q15, encoding Leucine-rich repeat-containing protein 10 (Q5BKY1). May play important roles in cardiac development and/or cardiac function.

Predicted to enable actin binding activity. Predicted to be involved in cardiac muscle cell development. Predicted to be located in mitochondrion; myofibril; and nucleus. Predicted to be active in cytoskeleton and sarcomere.

Source: NCBI Gene 376132 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): dilated cardiomyopathy (No Known Disease Relationship, ClinGen)
  • GWAS associations: 4
  • Clinical variants (ClinVar): 211 total
  • MANE Select transcript: NM_201550

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:20264
Approved symbolLRRC10
Nameleucine rich repeat containing 10
Location12q15
Locus typegene with protein product
StatusApproved
AliasesHRLRRP, LRRC10A
Ensembl geneENSG00000198812
Ensembl biotypeprotein_coding
OMIM610846
Entrez376132

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 protein_coding

ENST00000361484

RefSeq mRNA: 1 — MANE Select: NM_201550 NM_201550

CCDS: CCDS31856

Canonical transcript exons

ENST00000361484 — 1 exons

ExonStartEnd
ENSE000014348116960856469610907

Expression profiles

Bgee: expression breadth broad, 13 present calls, max score 91.93.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1325 / max 112.4346, expressed in 17 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
1320260.121517
1320230.01092

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
apex of heartUBERON:000209891.93gold quality
heart left ventricleUBERON:000208486.73gold quality
right atrium auricular regionUBERON:000663180.37gold quality
heartUBERON:000094878.41gold quality
lymph nodeUBERON:000002946.38gold quality
granulocyteCL:000009443.09silver quality
sural nerveUBERON:001548840.56gold quality
vermiform appendixUBERON:000115440.27gold quality
gastrocnemiusUBERON:000138840.23silver quality
muscle of legUBERON:000138339.45silver quality
gall bladderUBERON:000211038.01gold quality
colonic epitheliumUBERON:000039737.20gold quality
ventricular zoneUBERON:000305336.48gold quality
cortical plateUBERON:000534336.47gold quality
bone marrowUBERON:000237136.39gold quality
bone marrow cellCL:000209236.16gold quality
muscle tissueUBERON:000238535.68gold quality
ganglionic eminenceUBERON:000402335.49gold quality
leukocyteCL:000073834.91gold quality
skeletal muscle tissueUBERON:000113434.89gold quality
monocyteCL:000057634.25gold quality
cerebellar hemisphereUBERON:000224533.20gold quality
cerebellumUBERON:000203733.07gold quality
placentaUBERON:000198733.04silver quality
cerebellar cortexUBERON:000212933.02gold quality
smooth muscle tissueUBERON:000113532.78gold quality
liverUBERON:000210732.47gold quality
hindlimb stylopod muscleUBERON:000425232.15gold quality
right hemisphere of cerebellumUBERON:001489032.11gold quality
tonsilUBERON:000237231.86gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

ExperimentMarker?Max mean expression
E-ANND-3no1.81

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): GATA4, MEF2C, NKX2-5

miRNA regulators (miRDB)

61 targeting LRRC10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-186-5P99.9970.833707
HSA-MIR-450099.9972.722367
HSA-MIR-60799.9773.625593
HSA-MIR-551B-5P99.9671.283493
HSA-MIR-3529-3P99.9073.553045
HSA-MIR-368699.9070.532432
HSA-MIR-430299.8967.941187
HSA-MIR-4697-3P99.8967.091123
HSA-MIR-4731-5P99.8967.232537
HSA-MIR-6780A-5P99.8866.692776
HSA-MIR-313399.8170.923506
HSA-MIR-370-5P99.7866.81706
HSA-MIR-129999.7771.242389
HSA-MIR-371499.7170.742671
HSA-MIR-518A-5P99.7069.012209
HSA-MIR-52799.7069.012209
HSA-MIR-509399.6769.262291
HSA-MIR-452-5P99.6569.631762
HSA-MIR-4676-3P99.6569.311733
HSA-MIR-892C-3P99.6569.381745
HSA-MIR-561-3P99.6470.903647
HSA-MIR-875-3P99.6369.472548
HSA-MIR-5003-5P99.6169.131624
HSA-MIR-516B-5P99.5666.331495
HSA-MIR-427699.5667.662514
HSA-MIR-510-3P99.5470.062965
HSA-MIR-444199.4966.563216
HSA-MIR-5584-5P99.4968.222814

Literature-anchored findings (GeneRIF, showing 4)

  • This study firstly reports the association of LRRC10 mutations with enhanced susceptibility to dilated cardiomyopathy in humans. (PMID:26017719)
  • LRRC10 may be a new susceptible gene for Sudden unexplained nocturnal death syndrome, and LRRC10 variant was initially and genetically linked to Brugada syndrome associated arrhythmia. (PMID:28032242)
  • Examination of a patient with dilated cardiomyopathy revealed homozygosity for a previously unreported LRRC10 variant: I195T. Wild-type and I195T LRRC10 function as cardiac-specific subunits of L-type Ca(2+) channels and exert dramatically different effects on channel gating, providing a potential link to DCM. (PMID:29431102)
  • Cardiac L-type calcium channel regulation by Leucine-Rich Repeat-Containing Protein 10. (PMID:38762910)

Cross-species orthologs

2 orthologs

OrganismSymbolGene ID
danio_reriolrrc10ENSDARG00000045612
mus_musculusLrrc10ENSMUSG00000060187

Paralogs (31): LRRC7 (ENSG00000033122), PHLPP2 (ENSG00000040199), LRRC40 (ENSG00000066557), LRCH4 (ENSG00000077454), PHLPP1 (ENSG00000081913), SHOC2 (ENSG00000108061), ERBIN (ENSG00000112851), LRRC39 (ENSG00000122477), LRCH2 (ENSG00000130224), LRCH1 (ENSG00000136141), LRRC8A (ENSG00000136802), LRRC1 (ENSG00000137269), MFHAS1 (ENSG00000147324), LRRC27 (ENSG00000148814), LRRK1 (ENSG00000154237), LRRC58 (ENSG00000163428), LRRC2 (ENSG00000163827), LRRC18 (ENSG00000165383), LRRC28 (ENSG00000168904), LRRC8E (ENSG00000171017), LRRC8C (ENSG00000171488), LRRC8D (ENSG00000171492), PIDD1 (ENSG00000177595), SCRIB (ENSG00000180900), LRCH3 (ENSG00000186001), LRRIQ4 (ENSG00000188306), LRRC8B (ENSG00000197147), LRRC10B (ENSG00000204950), LRRC30 (ENSG00000206422), LRRC69 (ENSG00000214954), LRRD1 (ENSG00000240720)

Protein

Protein identifiers

Leucine-rich repeat-containing protein 10Q5BKY1 (reviewed: Q5BKY1)

All UniProt accessions (1): Q5BKY1

UniProt curated annotations — full annotation on UniProt →

Function. May play important roles in cardiac development and/or cardiac function.

Subcellular location. Nucleus.

RefSeq proteins (1): NP_963844* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001611Leu-rich_rptRepeat
IPR003591Leu-rich_rpt_typical-subtypRepeat
IPR032675LRR_dom_sfHomologous_superfamily
IPR050216LRR_domain-containingFamily

Pfam: PF13855

UniProt features (8 total): repeat 7, chain 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q5BKY1-F186.540.75

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 34 (showing top): GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, GOBP_CARDIAC_MUSCLE_CELL_DIFFERENTIATION, NIKOLSKY_BREAST_CANCER_12Q13_Q21_AMPLICON, GOBP_CARDIOCYTE_DIFFERENTIATION, GOMF_ACTIN_BINDING, GOBP_MUSCLE_CELL_DEVELOPMENT, GOBP_CIRCULATORY_SYSTEM_DEVELOPMENT, GOBP_CARDIAC_CELL_DEVELOPMENT, GOBP_MUSCLE_CELL_DIFFERENTIATION, MARSON_BOUND_BY_FOXP3_UNSTIMULATED, GOMF_ACTININ_BINDING, GOMF_CYTOSKELETAL_PROTEIN_BINDING, GOMF_ALPHA_ACTININ_BINDING

GO Biological Process (1): cardiac muscle cell development (GO:0055013)

GO Molecular Function (3): actin binding (GO:0003779), alpha-actinin binding (GO:0051393), protein binding (GO:0005515)

GO Cellular Component (5): nucleus (GO:0005634), mitochondrion (GO:0005739), cytoskeleton (GO:0005856), sarcomere (GO:0030017), myofibril (GO:0030016)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
intracellular membrane-bounded organelle2
striated muscle cell development1
cardiac cell development1
cardiac muscle cell differentiation1
cytoskeletal protein binding1
actinin binding1
binding1
cytoplasm1
intracellular membraneless organelle1
myofibril1
cellular anatomical structure1
contractile muscle fiber1

Protein interactions and networks

STRING

962 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
LRRC10BEST3Q8N1M1550
LRRC10CCT2P78371544
LRRC10SLMAPQ14BN4498
LRRC10FRS2Q8WU20495
LRRC10RANGRFQ9HD47480
LRRC10KCNE5Q9UJ90475
LRRC10TSPAN31Q12999468
LRRC10HTR4Q13639462
LRRC10ATP23Q9Y6H3458
LRRC10LRRC52Q8N7C0448
LRRC10LRRC26Q2I0M4447
LRRC10METTL1Q9UBP6436
LRRC10LRRC38Q5VT99431
LRRC10GPD1LQ8N335430
LRRC10BBS10Q8TAM1428

IntAct

6 interactions, top by confidence:

ABTypeScore
LRRC10CCT2psi-mi:“MI:0914”(association)0.530
LRRC10psi-mi:“MI:0915”(physical association)0.400
LRRC10A2ML1psi-mi:“MI:0914”(association)0.350
TBXA2RUPK3BL1psi-mi:“MI:0914”(association)0.350
LRRC10TUSC2psi-mi:“MI:0914”(association)0.350

BioGRID (41): LRRC10 (Synthetic Lethality), ENOSF1 (Affinity Capture-MS), CCT6B (Affinity Capture-MS), SUGT1 (Affinity Capture-MS), ARHGAP8 (Affinity Capture-MS), CCT2 (Affinity Capture-MS), LRRC10 (Affinity Capture-MS), LRRC10 (Proximity Label-MS), EVPL (Affinity Capture-MS), IGHG1 (Affinity Capture-MS), LCN2 (Affinity Capture-MS), FLG (Affinity Capture-MS), CCT6B (Affinity Capture-MS), IGKC (Affinity Capture-MS), POF1B (Affinity Capture-MS)

ESM2 similar proteins: A0JM56, A0JPI9, A4IHG1, A5PK13, D3YY91, F1ND48, O35125, Q13309, Q15813, Q24K06, Q32KP2, Q32KS0, Q32L08, Q32NT4, Q3KQF4, Q3KRC6, Q3UGP9, Q498T9, Q4U2V3, Q5BKY1, Q5DU41, Q5FVQ9, Q5PQJ7, Q5QJ74, Q5R8X9, Q5RBD9, Q5U378, Q66JT1, Q68F79, Q6GQN5, Q6NSJ5, Q6NU09, Q6P9F7, Q6WRX3, Q6ZNQ3, Q8C5W3, Q8CDN9, Q8CIV8, Q8IY45, Q8IZ02

Diamond homologs: A6NIK2, Q24K06, Q5BKY1, Q8K3W2, O74874, Q9C2R2

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

211 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance143
Likely benign52
Benign8

Top pathogenic / likely-pathogenic (0)

SpliceAI

10 predictions. Top by Δscore:

VariantEffectΔscore
12:69609028:T:Gacceptor_gain0.5100
12:69609027:T:TGacceptor_gain0.5000
12:69609953:T:TAdonor_gain0.4100
12:69610255:A:ACdonor_gain0.3500
12:69609928:T:TAdonor_gain0.3000
12:69609021:CAAAC:Cacceptor_gain0.2500
12:69609026:CTTT:Cacceptor_gain0.2500
12:69609933:T:Adonor_gain0.2500
12:69610188:G:Tdonor_gain0.2200
12:69610334:G:Cdonor_gain0.2000

AlphaMissense

1804 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
12:69610156:G:TP228H0.996
12:69610173:A:CN222K0.993
12:69610173:A:TN222K0.993
12:69610189:A:TV217D0.993
12:69610234:A:GI202T0.991
12:69610225:A:GF205S0.990
12:69610239:G:CN200K0.989
12:69610239:G:TN200K0.989
12:69610294:A:GF182S0.989
12:69610126:C:TG238E0.988
12:69610184:A:CY219D0.988
12:69610240:T:AN200I0.988
12:69610157:G:AP228S0.987
12:69610255:A:TI195N0.987
12:69610402:A:TL146H0.987
12:69610531:A:GL103P0.987
12:69610127:C:GG238R0.986
12:69610127:C:TG238R0.986
12:69610175:T:AN222Y0.986
12:69610600:A:GL80P0.986
12:69610663:A:GL59P0.986
12:69610126:C:AG238V0.985
12:69610127:C:AG238W0.985
12:69610175:T:CN222D0.985
12:69610531:A:TL103H0.985
12:69610669:A:GL57P0.985
12:69610669:A:TL57H0.985
12:69610318:A:GL174P0.984
12:69610462:A:GL126P0.984
12:69610471:A:TL123H0.984

dbSNP variants (sampled 300 via entrez): RS1002033341 (12:69609026 C>A,T), RS1002467555 (12:69608684 G>A,C,T), RS1003705541 (12:69610424 C>T), RS1003792881 (12:69608462 G>A,T), RS1003895625 (12:69608963 T>C), RS1004344001 (12:69612529 A>G), RS1004715907 (12:69612116 G>A,T), RS1005999004 (12:69610659 G>A,C), RS1006009782 (12:69611534 G>A), RS1006049803 (12:69611242 G>T), RS1006445963 (12:69611007 C>T), RS1008085518 (12:69609178 G>A), RS1008731269 (12:69609801 C>T), RS1009981266 (12:69611663 T>C), RS1010580064 (12:69608704 A>T)

Disease associations

OMIM: gene MIM:610846 | disease phenotypes:

GenCC curated gene-disease

DiseaseClassificationInheritance
dilated cardiomyopathyNo Known Disease RelationshipAutosomal recessive

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
dilated cardiomyopathyNo Known Disease RelationshipAR

Mondo (1): dilated cardiomyopathy (MONDO:0005021)

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

4 associations (top):

StudyTraitp-value
GCST000175_26Height3.000000e-06
GCST006414_12Atrial fibrillation2.000000e-13
GCST006414_64Atrial fibrillation9.000000e-09
GCST007006_11Logical memory (delayed recall) in normal cognition4.000000e-07

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0004874memory performance

MeSH disease descriptors (1)

DescriptorNameTree numbers
D002311Cardiomyopathy, DilatedC14.280.195.160; C14.280.238.070; C16.320.488.750

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

9 total (human), top 9 by PubMed support.

ChemicalActions (top 5)PubMed papers
Doxorubicindecreases expression, increases expression2
aristolochic acid Iincreases expression1
Resveratrolaffects cotreatment, decreases expression1
Sunitinibdecreases expression1
Acetaminophenincreases expression1
Benzo(a)pyreneincreases methylation, decreases methylation1
Cadmiumdecreases expression1
Plant Extractsaffects cotreatment, decreases expression1
Triclosandecreases expression1

Clinical trials (associated diseases)

158 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00374465PHASE4UNKNOWNTherapy With Verapamil or Carvedilol in Chronic Heart Failure
NCT01293903PHASE4COMPLETEDStudy of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy
NCT01557140PHASE4COMPLETEDA Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy
NCT01917149PHASE4COMPLETEDSupramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy
NCT02115581PHASE4COMPLETEDCoenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy
NCT06236022PHASE4RECRUITINGThe Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus
NCT00333827PHASE3COMPLETEDCell Therapy In Dilated Cardiomyopathy
NCT00505154PHASE3COMPLETEDEffect of Rosuvastatin on Left Ventricular Remodeling
NCT01223703PHASE3COMPLETEDPUFAs and Left Ventricular Function in Heart Failure
NCT01583114PHASE3TERMINATEDPREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors
NCT01914081PHASE3UNKNOWNResveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside
NCT02989181PHASE3UNKNOWNContinues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea
NCT03439514PHASE3TERMINATEDA Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation
NCT05237323PHASE3COMPLETEDMicophenolate Mofetil Versus Azathioprine in Myocarditis
NCT05849766PHASE3COMPLETEDEffect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction
NCT06250257PHASE3RECRUITINGBromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age
NCT00629018PHASE2COMPLETEDSafety and Efficacy Study of Stem Cell Transplantation to Treat Dilated Cardiomyopathy
NCT00629096PHASE2COMPLETEDIntracoronary Infusion of Autologous Bone Marrow Cells for Treatment of Idiopathic Dilated Cardiomyopathy
NCT00765518PHASE2COMPLETEDUse of Ixmyelocel-T (Formerly Cardiac Repair Cell [CRC] Treatment) in Patients With Heart Failure Due to Dilated Cardiomyopathy (IMPACT-DCM)
NCT00847964PHASE2COMPLETEDSafety and Feasibility of Algisyl-LVR™ as a Method of Left Ventricular Restoration in Patients With DCM Undergoing Open-heart Surgery
NCT01020968PHASE2COMPLETEDUse of Ixmyelocel-T (Formerly Catheter-based Cardiac Repair Cell [CRC]) Treatment in Patients With Heart Failure Due to Dilated Cardiomyopathy
NCT01302171PHASE2COMPLETEDBone Marrow Derived Adult Stem Cells for Dilated Cardiomyopathy
NCT01350310PHASE2COMPLETEDSafety and Efficacy Study of Intramyocardial Stem Cell Therapy in Patients With Dilated Cardiomyopathy
NCT02133911PHASE2COMPLETEDA Pilot Trial of Ranolazine to Treat Patients With Dilated Cardiomyopathy
NCT03071653PHASE2SUSPENDEDLeft Cardiac Sympathetic Denervation for Cardiomyopathy Feasibility Pilot Study
NCT03572660PHASE2ACTIVE_NOT_RECRUITINGUse of Bone Marrow Derived Stem Cell and G-CSF With Circulatory Assistance in the Treatment of DCM
NCT03775070PHASE2COMPLETEDSimvastatin Therapy in Patients With Dilated Cardiomyopathy.
NCT04405804PHASE2UNKNOWNEarly Administration of Ivabradine in Children With Heart Failure
NCT05410873PHASE2COMPLETEDExamining the Effects of Mitochondrial Oxidative Stress in DCM
NCT06632834PHASE2RECRUITINGOutcome-targeted Therapy: Principle and Outcome Evaluation: Clinical Study and Phenotype-genotype Correlation
NCT00585546PHASE1TERMINATEDHarefield Recovery Protocol Study for Patients With Refractory Chronic Heart Failure
NCT02293603PHASE1UNKNOWNDilated cardiomYopathy iNtervention With Allogeneic MyocardIally-regenerative Cells (DYNAMIC)
NCT03062956PHASE1COMPLETEDA Single Ascending Dose Study Assessing the Safety, Tolerability, PK and PD of MYK-491
NCT03129568PHASE1COMPLETEDTranscoronary Infusion of Cardiac Progenitor Cells in Pediatric Dilated Cardiomyopathy
NCT04982081PHASE1UNKNOWNTreating Congestive HF With hiPSC-CMs Through Endocardial Injection
NCT06381466PHASE1TERMINATEDA Study to Investigate Safety, Tolerability, and Pharmacokinetics of Oral AZD0233 Compared With Placebo in Healthy Adult Participants.
NCT06464588PHASE1RECRUITINGA Phase 1 Open-Label Study of the Safety of Intravenous Allogeneic Neonatal Mesenchymal Cells (nMSCs) in Young Adult (1A) and Pediatric (1B) Patients With Dilated Cardiomyopathy (DCM)
NCT06902896PHASE1COMPLETEDSafety and Efficacy of FAP iCDC in End-stage Dilated Cardiomyopathy
NCT07137338PHASE1RECRUITINGA Phase 1 AAV Gene Therapy Trial Evaluating Safety and Preliminary Efficacy of RP-A701 in Subjects With BAG3 Dilated Cardiomyopathy
NCT07241104PHASE1RECRUITINGA Study of AZD4063 in PLN R14del Dilated Cardiomyopathy
  • Associated diseases: dilated cardiomyopathy
  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dilated cardiomyopathy