LTK
gene geneOn this page
Also known as TYK1
Summary
LTK (leukocyte receptor tyrosine kinase, HGNC:6721) is a protein-coding gene on chromosome 15q15.1, encoding Leukocyte tyrosine kinase receptor (P29376). Receptor with a tyrosine-protein kinase activity.
The protein encoded by this gene is a member of the ros/insulin receptor family of tyrosine kinases. Tyrosine-specific phosphorylation of proteins is a key to the control of diverse pathways leading to cell growth and differentiation. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 4058 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 171 total
- Druggable target: yes — 43 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002344
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6721 |
| Approved symbol | LTK |
| Name | leukocyte receptor tyrosine kinase |
| Location | 15q15.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TYK1 |
| Ensembl gene | ENSG00000062524 |
| Ensembl biotype | protein_coding |
| OMIM | 151520 |
| Entrez | 4058 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 14 protein_coding, 2 retained_intron
ENST00000263800, ENST00000355166, ENST00000453182, ENST00000561619, ENST00000563518, ENST00000569283, ENST00000897466, ENST00000897467, ENST00000897468, ENST00000953759, ENST00000953760, ENST00000953761, ENST00000953762, ENST00000953763, ENST00000953764, ENST00000953765
RefSeq mRNA: 3 — MANE Select: NM_002344
NM_001135685, NM_002344, NM_206961
CCDS: CCDS10077, CCDS10078, CCDS45237
Canonical transcript exons
ENST00000263800 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001029872 | 41507095 | 41507290 |
| ENSE00001029873 | 41504342 | 41504432 |
| ENSE00001029876 | 41504506 | 41504640 |
| ENSE00001206223 | 41507562 | 41507657 |
| ENSE00002606513 | 41513667 | 41513827 |
| ENSE00003471724 | 41505713 | 41505777 |
| ENSE00003487806 | 41511817 | 41511963 |
| ENSE00003498743 | 41511164 | 41511346 |
| ENSE00003504321 | 41505915 | 41506005 |
| ENSE00003509312 | 41509031 | 41509129 |
| ENSE00003540594 | 41504773 | 41504874 |
| ENSE00003561833 | 41505208 | 41505305 |
| ENSE00003577607 | 41511422 | 41511578 |
| ENSE00003578928 | 41508069 | 41508221 |
| ENSE00003587634 | 41503637 | 41504244 |
| ENSE00003598502 | 41505401 | 41505530 |
| ENSE00003642884 | 41504972 | 41505064 |
| ENSE00003663659 | 41512707 | 41512878 |
| ENSE00003681594 | 41512977 | 41513120 |
| ENSE00003694646 | 41512115 | 41512265 |
Expression profiles
Bgee: expression breadth ubiquitous, 168 present calls, max score 90.63.
FANTOM5 (CAGE): breadth broad, TPM avg 0.5033 / max 24.8596, expressed in 197 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149527 | 0.5033 | 197 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 90.63 | gold quality |
| right lung | UBERON:0002167 | 85.26 | gold quality |
| parotid gland | UBERON:0001831 | 83.77 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.60 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 81.45 | gold quality |
| duodenum | UBERON:0002114 | 80.24 | gold quality |
| heart right ventricle | UBERON:0002080 | 80.20 | gold quality |
| upper lobe of lung | UBERON:0008948 | 79.89 | gold quality |
| inferior olivary complex | UBERON:0002127 | 79.62 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 79.20 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 78.02 | gold quality |
| rectum | UBERON:0001052 | 76.82 | gold quality |
| jejunal mucosa | UBERON:0000399 | 76.20 | gold quality |
| transverse colon | UBERON:0001157 | 76.10 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 76.05 | gold quality |
| small intestine | UBERON:0002108 | 74.66 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 74.62 | gold quality |
| body of stomach | UBERON:0001161 | 72.89 | gold quality |
| granulocyte | CL:0000094 | 72.66 | gold quality |
| spleen | UBERON:0002106 | 72.60 | gold quality |
| type B pancreatic cell | CL:0000169 | 71.86 | gold quality |
| gall bladder | UBERON:0002110 | 71.75 | gold quality |
| intestine | UBERON:0000160 | 71.50 | gold quality |
| colon | UBERON:0001155 | 71.44 | gold quality |
| olfactory bulb | UBERON:0002264 | 71.09 | gold quality |
| right frontal lobe | UBERON:0002810 | 70.93 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 70.87 | gold quality |
| stomach | UBERON:0000945 | 70.70 | gold quality |
| large intestine | UBERON:0000059 | 70.69 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 70.30 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.16 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
11 targeting LTK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-208B-5P | 99.42 | 70.83 | 1952 |
| HSA-MIR-6731-5P | 99.28 | 67.42 | 2375 |
| HSA-MIR-8085 | 99.28 | 67.56 | 2362 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-665 | 97.60 | 65.64 | 1781 |
| HSA-MIR-320E | 97.49 | 65.96 | 865 |
| HSA-MIR-874-5P | 96.93 | 63.92 | 1014 |
Literature-anchored findings (GeneRIF, showing 8)
- polymorphic LTKs cause up-regulation of the PI3K pathway and possibly form one genetic component of susceptibility to abnormal proliferation of self-reactive B cells in systemic lupus erythematosus (PMID:14695357)
- aberrant activation of LTK may contribute to neoplastic cell growth. (PMID:22347506)
- Only two related secreted factors, FAM150A and FAM150B (family with sequence similarity 150 member A and member B), stimulated LTK phosphorylation. (PMID:25331893)
- Data show FAM150B, which was named as augmentor-alpha (AUG-alpha), binds and activtes both anaplastic lymphoma kinase (ALK) and tyrosine kinase (LTK). (PMID:26630010)
- LTK-to-Sec12 signaling represents the first example of an endoplasmic reticulum-resident signaling module with the potential to regulate proteostasis. (PMID:31227593)
- Structural basis of cytokine-mediated activation of ALK family receptors. (PMID:34646012)
- The CLIP1-LTK fusion is an oncogenic driver in non-small-cell lung cancer. (PMID:34819663)
- Spindle cell neoplasms with novel LTK fusion - Expanding the spectrum of kinase fusion-positive soft tissue tumors. (PMID:38517106)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Ltk | ENSMUSG00000027297 |
| rattus_norvegicus | Ltk | ENSRNOG00000025130 |
Paralogs (53): INSRR (ENSG00000027644), MUSK (ENSG00000030304), FLT4 (ENSG00000037280), EPHA3 (ENSG00000044524), ROS1 (ENSG00000047936), ERBB3 (ENSG00000065361), TIE1 (ENSG00000066056), FGFR2 (ENSG00000066468), FGFR3 (ENSG00000068078), EPHA8 (ENSG00000070886), FGFR1 (ENSG00000077782), EPHA6 (ENSG00000080224), TYRO3 (ENSG00000092445), FLT1 (ENSG00000102755), MET (ENSG00000105976), EPHB6 (ENSG00000106123), PDGFRB (ENSG00000113721), EPHA4 (ENSG00000116106), TEK (ENSG00000120156), FLT3 (ENSG00000122025), KDR (ENSG00000128052), EPHB2 (ENSG00000133216), PDGFRA (ENSG00000134853), EPHA7 (ENSG00000135333), IGF1R (ENSG00000140443), NTRK3 (ENSG00000140538), ERBB2 (ENSG00000141736), EPHA2 (ENSG00000142627), EPHA5 (ENSG00000145242), EGFR (ENSG00000146648), EPHA1 (ENSG00000146904), NTRK2 (ENSG00000148053), MERTK (ENSG00000153208), EPHB1 (ENSG00000154928), KIT (ENSG00000157404), FGFR4 (ENSG00000160867), DDR2 (ENSG00000162733), RYK (ENSG00000163785), MST1R (ENSG00000164078), LMTK2 (ENSG00000164715)
Protein
Protein identifiers
Leukocyte tyrosine kinase receptor — P29376 (reviewed: P29376)
Alternative names: Protein tyrosine kinase 1
All UniProt accessions (2): P29376, H3BVG6
UniProt curated annotations — full annotation on UniProt →
Function. Receptor with a tyrosine-protein kinase activity. Following activation by ALKAL1 or ALKAL2 ligands at the cell surface, transduces an extracellular signal into an intracellular response. Ligand-binding to the extracellular domain induces tyrosine kinase activation, leading to activation of the mitogen-activated protein kinase (MAPK) pathway. Phosphorylates almost exclusively at the first tyrosine of the Y-x-x-x-Y-Y motif. The exact function of this protein is not known; studies with chimeric proteins demonstrate its ability to promote growth and specifically neurite outgrowth, and cell survival. Involved in regulation of the secretory pathway involving endoplasmic reticulum (ER) export sites (ERESs) and ER to Golgi transport.
Subunit / interactions. Homodimer; homodimerizes following ligand-binding. Part of a complex including LTK, TNK2 and GRB2, in which GRB2 promotes LTK recruitment by TNK2.
Subcellular location. Cell membrane.
Tissue specificity. Expressed in non-hematopoietic cell lines and T- and B-cell lines.
Post-translational modifications. Phosphorylated at tyrosine residues by autocatalysis, which activates kinase activity.
Disease relevance. Genetic variations in LTK that cause up-regulation of the PI3K pathway may possibly contribute to susceptibility to abnormal proliferation of self-reactive B-cells and, therefore, to systemic lupus erythematosus (SLE). SLE is a chronic, inflammatory and often febrile multisystemic disorder of connective tissue, thought to represent a failure of the regulatory mechanisms of the autoimmune system.
Activity regulation. Activated by ligand-binding, leading to homodimerization and autophosphorylation.
Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family. Insulin receptor subfamily.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P29376-1 | Lambda P2 | yes |
| P29376-2 | Lambda P1 | |
| P29376-3 | Lambda P3 | |
| P29376-4 | 2 | |
| P29376-5 | 5 |
RefSeq proteins (3): NP_001129157, NP_002335, NP_996844 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR001245 | Ser-Thr/Tyr_kinase_cat_dom | Domain |
| IPR002011 | Tyr_kinase_rcpt_2_CS | Conserved_site |
| IPR008266 | Tyr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR020635 | Tyr_kinase_cat_dom | Domain |
| IPR050122 | RTK | Family |
| IPR055163 | ALK/LTK-like_GRD | Domain |
Pfam: PF07714, PF12810
Enzyme classification (BRENDA):
- EC 2.7.10.1 — receptor protein-tyrosine kinase (BRENDA: 44 organisms, 214 substrates, 574 inhibitors, 11 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0011–0.129 | 4 |
| AC-DYFE-6-CHLORO-W-NHME | 0.0051 | 1 |
| AC-DYFGW-NHME | 0.07 | 1 |
| YFEW | 0.232 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)
UniProt features (71 total): strand 17, sequence variant 8, splice variant 6, helix 6, mutagenesis site 5, compositionally biased region 4, sequence conflict 4, region of interest 4, glycosylation site 3, disulfide bond 3, binding site 2, topological domain 2, signal peptide 1, chain 1, active site 1, modified residue 1, transmembrane region 1, domain 1, turn 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7NX1 | X-RAY DIFFRACTION | 1.3 |
| 7NX0 | X-RAY DIFFRACTION | 1.95 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P29376-F1 | 73.41 | 0.37 |
Antibody-complex structures (SAbDab): 1 — 7NX0
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 643 (proton acceptor)
Ligand- & substrate-binding residues (2): 516–524; 544
Post-translational modifications (1): 676
Disulfide bonds (3): 73–86, 168–179, 300–322
Glycosylation sites (3): 257, 380, 412
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 241 | abolished homodimerization following interaction with alkal1. |
| 544 | loss of interaction with plcg1, pi3-kinase subunit p85, ras gtpase-activating protein and raf1. |
| 750 | increases autophosphorylation and interaction with pi3-kinase subunit p85 (demonstrated with chimeric egfr-ltk). |
| 753 | abolishes interaction with pi3-kinase subunit p85, impairs pi3 kinase activity and leads to apoptosis (demonstrated with |
| 862 | impairs phosphorylation of cblc (demonstrated with chimeric egfr-ltk). |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-9842663 | Signaling by LTK |
| R-HSA-162582 | Signal Transduction |
| R-HSA-9006934 | Signaling by Receptor Tyrosine Kinases |
MSigDB gene sets: 187 (showing top):
MORF_RAGE, MORF_FLT1, BENPORATH_ES_WITH_H3K27ME3, GOBP_CELLULAR_RESPONSE_TO_LIPID, GOBP_NEUROGENESIS, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOMF_KINASE_ACTIVATOR_ACTIVITY, GCM_RING1, GOBP_REGULATION_OF_CELL_PROJECTION_ORGANIZATION, GOBP_CELLULAR_RESPONSE_TO_RETINOIC_ACID, GOBP_REGULATION_OF_NEURON_DIFFERENTIATION, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4, GOBP_PHOSPHATIDYLINOSITOL_3_KINASE_PROTEIN_KINASE_B_SIGNAL_TRANSDUCTION, GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_RESPONSE_TO_LIPID
GO Biological Process (12): protein phosphorylation (GO:0006468), signal transduction (GO:0007165), cell surface receptor protein tyrosine kinase signaling pathway (GO:0007169), cell population proliferation (GO:0008283), positive regulation of cardiac muscle cell apoptotic process (GO:0010666), positive regulation of neuron projection development (GO:0010976), peptidyl-tyrosine autophosphorylation (GO:0038083), regulation of cell population proliferation (GO:0042127), negative regulation of apoptotic process (GO:0043066), regulation of neuron differentiation (GO:0045664), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), cellular response to retinoic acid (GO:0071300)
GO Molecular Function (9): protein kinase activity (GO:0004672), protein tyrosine kinase activity (GO:0004713), transmembrane receptor protein tyrosine kinase activity (GO:0004714), ATP binding (GO:0005524), receptor signaling protein tyrosine kinase activator activity (GO:0030298), nucleotide binding (GO:0000166), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (3): plasma membrane (GO:0005886), membrane (GO:0016020), signaling receptor complex (GO:0043235)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Signaling by Receptor Tyrosine Kinases | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 2 |
| regulation of cellular process | 2 |
| phosphorylation | 1 |
| protein modification process | 1 |
| cell communication | 1 |
| signaling | 1 |
| cellular response to stimulus | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| cardiac muscle cell apoptotic process | 1 |
| positive regulation of striated muscle cell apoptotic process | 1 |
| regulation of cardiac muscle cell apoptotic process | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| positive regulation of cell projection organization | 1 |
| peptidyl-tyrosine phosphorylation | 1 |
| protein autophosphorylation | 1 |
| cell population proliferation | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| neuron differentiation | 1 |
| regulation of cell differentiation | 1 |
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| positive regulation of intracellular signal transduction | 1 |
| response to retinoic acid | 1 |
| cellular response to lipid | 1 |
| cellular response to oxygen-containing compound | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| protein kinase activity | 1 |
| protein tyrosine kinase activity | 1 |
| transmembrane receptor protein kinase activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| protein tyrosine kinase activator activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
Protein interactions and networks
STRING
1070 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LTK | ALKAL2 | Q6UX46 | 864 |
| LTK | ALKAL1 | Q6UXT8 | 793 |
| LTK | CD5 | P06127 | 550 |
| LTK | PIK3R1 | P27986 | 500 |
| LTK | TNK2 | Q07912 | 446 |
| LTK | PTPRM | P28827 | 402 |
| LTK | AXL | P30530 | 394 |
| LTK | ALK | Q9UM73 | 391 |
| LTK | EML4 | Q9HC35 | 369 |
| LTK | ANGPT1 | Q15389 | 344 |
| LTK | JAK2 | O60674 | 337 |
| LTK | ROS1 | P08922 | 333 |
| LTK | NPM1 | P06748 | 317 |
| LTK | PTN | P21246 | 317 |
| LTK | MDK | P21741 | 310 |
IntAct
14 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LTK | ALKAL1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| LTK | ALKAL1 | psi-mi:“MI:0914”(association) | 0.590 |
| ALKAL1 | LTK | psi-mi:“MI:0915”(physical association) | 0.590 |
| PIK3R1 | LTK | psi-mi:“MI:0914”(association) | 0.570 |
| LTK | EPHA2 | psi-mi:“MI:0915”(physical association) | 0.540 |
| PTPN1 | LTK | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LTK | PKM | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| LTK | PIK3R2 | psi-mi:“MI:0914”(association) | 0.420 |
| LTK | psi-mi:“MI:0915”(physical association) | 0.400 | |
| DUSP6 | LTK | psi-mi:“MI:0915”(physical association) | 0.370 |
| MTMR14 | LTK | psi-mi:“MI:0915”(physical association) | 0.370 |
| ALKAL2 | LTK | psi-mi:“MI:0914”(association) | 0.350 |
| LTK | AIP | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (191): LTK (Synthetic Growth Defect), LTK (Reconstituted Complex), EGFR (Affinity Capture-Western), LTK (Affinity Capture-Western), SHC1 (Affinity Capture-Western), LTK (Affinity Capture-Western), DUSP6 (Two-hybrid), MTMR14 (Two-hybrid), LTK (Affinity Capture-MS), LTK (Affinity Capture-MS), LTK (Affinity Capture-MS), LTK (Affinity Capture-Western), PLCG1 (Affinity Capture-Western), PIK3R1 (Affinity Capture-Western), CBL (Biochemical Activity)
ESM2 similar proteins: A0EQL2, A2AJ76, A2AJA7, A6H8M9, A8T650, A8T682, A8T688, A8T6A6, D3ZLH5, F1QVU0, O08628, O75173, O88839, P04278, P08514, P08689, P0DV84, P15196, P20701, P29376, P32970, P38570, P60882, P80012, P97497, P97793, Q13444, Q15113, Q5RFQ8, Q5TM20, Q61398, Q63191, Q6UXC1, Q7Z304, Q7Z442, Q7Z7M0, Q8BNJ2, Q8CG85, Q8K1S7, Q8NBP7
Diamond homologs: F1QVU0, F8W3R9, O02466, O15146, O42127, O73798, O76411, O76997, P00529, P00530, P00541, P00542, P00543, P04629, P06213, P07332, P08069, P08922, P08923, P08941, P09208, P09760, P0DV84, P11362, P13368, P14238, P14616, P14617, P15127, P15208, P15209, P16092, P16591, P16879, P18460, P18461, P20806, P21802, P21803, P21804
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| LTK | “down-regulates activity” | PREB | phosphorylation |
| LTK | up-regulates | CBL | phosphorylation |
| LTK | up-regulates | IRS1 | phosphorylation |
| LTK | up-regulates | PIK3CG | binding |
| LTK | up-regulates | SHC1 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
171 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 148 |
| Likely benign | 6 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2564 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:41504337:CACA:C | donor_loss | 1.0000 |
| 15:41504338:ACAC:A | donor_loss | 1.0000 |
| 15:41504339:CACCT:C | donor_loss | 1.0000 |
| 15:41504341:CCT:C | donor_loss | 1.0000 |
| 15:41504353:A:AC | donor_gain | 1.0000 |
| 15:41504354:C:CC | donor_gain | 1.0000 |
| 15:41504500:A:C | donor_gain | 1.0000 |
| 15:41504504:A:AC | donor_gain | 1.0000 |
| 15:41504505:C:CC | donor_gain | 1.0000 |
| 15:41504505:CA:C | donor_gain | 1.0000 |
| 15:41504508:AGGC:A | donor_gain | 1.0000 |
| 15:41504544:T:TA | donor_gain | 1.0000 |
| 15:41504641:CTG:C | acceptor_loss | 1.0000 |
| 15:41505204:TAACC:T | donor_loss | 1.0000 |
| 15:41505205:AACCT:A | donor_loss | 1.0000 |
| 15:41505206:A:AC | donor_loss | 1.0000 |
| 15:41505207:C:T | donor_loss | 1.0000 |
| 15:41505395:TCTCA:T | donor_loss | 1.0000 |
| 15:41505396:CTCA:C | donor_loss | 1.0000 |
| 15:41505397:TCA:T | donor_loss | 1.0000 |
| 15:41505398:CA:C | donor_loss | 1.0000 |
| 15:41505399:A:C | donor_loss | 1.0000 |
| 15:41505400:C:CA | donor_loss | 1.0000 |
| 15:41505527:CTTG:C | acceptor_gain | 1.0000 |
| 15:41505528:TTG:T | acceptor_gain | 1.0000 |
| 15:41505530:GC:G | acceptor_loss | 1.0000 |
| 15:41505531:C:CC | acceptor_gain | 1.0000 |
| 15:41505531:C:CG | acceptor_loss | 1.0000 |
| 15:41505535:G:C | acceptor_gain | 1.0000 |
| 15:41505535:G:GC | acceptor_gain | 1.0000 |
AlphaMissense
5510 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:41504774:A:G | W707R | 0.991 |
| 15:41504774:A:T | W707R | 0.991 |
| 15:41505062:T:A | D643V | 0.991 |
| 15:41505062:T:G | D643A | 0.991 |
| 15:41504621:A:G | W714R | 0.990 |
| 15:41504621:A:T | W714R | 0.990 |
| 15:41504378:A:C | F770L | 0.988 |
| 15:41504378:A:T | F770L | 0.988 |
| 15:41504380:A:G | F770L | 0.988 |
| 15:41504389:G:T | R767S | 0.988 |
| 15:41504619:C:A | W714C | 0.988 |
| 15:41504619:C:G | W714C | 0.988 |
| 15:41504413:A:G | C759R | 0.987 |
| 15:41504634:A:C | F709L | 0.987 |
| 15:41504634:A:T | F709L | 0.987 |
| 15:41504636:A:G | F709L | 0.987 |
| 15:41505061:A:C | D643E | 0.987 |
| 15:41505061:A:T | D643E | 0.987 |
| 15:41512809:C:G | C86S | 0.987 |
| 15:41512810:A:T | C86S | 0.987 |
| 15:41505216:G:C | F639L | 0.985 |
| 15:41505216:G:T | F639L | 0.985 |
| 15:41505218:A:G | F639L | 0.985 |
| 15:41504411:A:C | C759W | 0.984 |
| 15:41504519:A:G | C748R | 0.984 |
| 15:41504793:G:C | F700L | 0.984 |
| 15:41504793:G:T | F700L | 0.984 |
| 15:41504795:A:G | F700L | 0.984 |
| 15:41505250:G:T | A628D | 0.984 |
| 15:41505915:C:A | K544N | 0.984 |
dbSNP variants (sampled 300 via entrez): RS1000070402 (15:41504249 A>G,T), RS1000207718 (15:41508692 C>G), RS1000349216 (15:41514230 C>T), RS1000448985 (15:41508401 A>C), RS1000522184 (15:41509715 C>A,T), RS1000590270 (15:41508414 C>T), RS1000789031 (15:41514151 G>T), RS1000979143 (15:41509510 T>C), RS1001332360 (15:41505768 C>G), RS1002249316 (15:41510702 C>T), RS1002559382 (15:41513298 C>A), RS1002604957 (15:41510997 G>A), RS1002720434 (15:41510314 C>T), RS1002984932 (15:41512228 T>C), RS1002986368 (15:41506800 G>C)
Disease associations
OMIM: gene MIM:151520 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004862_101 | Itch intensity from mosquito bite adjusted by bite size | 3.000000e-06 |
| GCST006463_20 | Urinary albumin excretion (no hypertensive medication) | 1.000000e-08 |
| GCST009379_199 | Type 2 diabetes | 1.000000e-13 |
| GCST009379_200 | Type 2 diabetes | 5.000000e-06 |
| GCST010658_17 | High density lipoprotein cholesterol levels | 4.000000e-08 |
| GCST90002389_295 | Lymphocyte percentage of white cells | 7.000000e-15 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008377 | mosquito bite reaction itch intensity measurement |
| EFO:0008378 | mosquito bite reaction size measurement |
| EFO:0004285 | albuminuria |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0007993 | lymphocyte percentage of leukocytes |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5627 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
43 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 486,107 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1789941 | RUXOLITINIB | 4 | 11,547 |
| CHEMBL1983268 | ENTRECTINIB | 4 | 3,510 |
| CHEMBL24828 | VANDETANIB | 4 | 42,230 |
| CHEMBL288441 | BOSUTINIB | 4 | 12,255 |
| CHEMBL3286830 | LORLATINIB | 4 | 3,598 |
| CHEMBL3301622 | GILTERITINIB | 4 | 2,395 |
| CHEMBL3545311 | BRIGATINIB | 4 | 5,634 |
| CHEMBL3622821 | UPADACITINIB | 4 | 2,726 |
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
| CHEMBL502835 | NINTEDANIB | 4 | 8,545 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL553 | ERLOTINIB | 4 | 108,300 |
| CHEMBL601719 | CRIZOTINIB | 4 | 14,403 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL939 | GEFITINIB | 4 | 117,814 |
| CHEMBL1879463 | DACTOLISIB | 3 | 7,988 |
| CHEMBL223360 | LINIFANIB | 3 | 3,925 |
| CHEMBL31965 | CANERTINIB | 3 | 8,083 |
| CHEMBL428690 | ALVOCIDIB | 3 | 27,781 |
| CHEMBL483158 | ALISERTIB | 3 | |
| CHEMBL491473 | CEDIRANIB | 3 | |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL103667 | DORAMAPIMOD | 2 | |
| CHEMBL1230609 | FORETINIB | 2 | |
| CHEMBL1721885 | SU-014813 | 2 | |
| CHEMBL1738757 | REBASTINIB | 2 | |
| CHEMBL1967878 | CENISERTIB | 2 | |
| CHEMBL1980297 | ILORASERTIB | 2 | |
| CHEMBL215152 | DEFOSBARASERTIB | 2 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Type XIX RTKs: Leukocyte tyrosine kinase (LTK) receptor family
Most potent curated ligand interactions (4 total), top 4:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| gilteritinib | Inhibition | 9.7 | pIC50 |
| compound 8e [PMID: 24432909] | Inhibition | 8.7 | pIC50 |
| belizatinib | Inhibition | 8.6 | pKd |
| compound 20 [PMID: 30998356] | Inhibition | 6.25 | pKi |
ChEMBL bioactivities
251 potent at pChembl≥5 of 288 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.46 | IC50 | 0.35 | nM | GILTERITINIB |
| 9.25 | IC50 | 0.567 | nM | CHEMBL4546504 |
| 9.02 | Kd | 0.95 | nM | TAE-684 |
| 8.96 | Kd | 1.1 | nM | CHEMBL464552 |
| 8.80 | Ki | 1.585 | nM | CHEMBL461876 |
| 8.80 | Ki | 1.585 | nM | ENTRECTINIB |
| 8.74 | IC50 | 1.8 | nM | CRIZOTINIB |
| 8.70 | IC50 | 2 | nM | CHEMBL3128069 |
| 8.70 | Ki | 1.995 | nM | CHEMBL1164265 |
| 8.60 | Kd | 2.5 | nM | CHEMBL2172308 |
| 8.60 | Ki | 2.512 | nM | CHEMBL1825138 |
| 8.57 | IC50 | 2.7 | nM | LORLATINIB |
| 8.57 | Ki | 2.7 | nM | LORLATINIB |
| 8.57 | IC50 | 2.7 | nM | CHEMBL5712062 |
| 8.50 | Ki | 3.162 | nM | CHEMBL1980995 |
| 8.50 | Ki | 3.162 | nM | CHEMBL1993661 |
| 8.44 | IC50 | 3.6 | nM | STAUROSPORINE |
| 8.40 | IC50 | 4 | nM | CHEMBL4473365 |
| 8.40 | Ki | 3.981 | nM | CHEMBL1980329 |
| 8.20 | IC50 | 6.3 | nM | CHEMBL4764610 |
| 8.10 | Ki | 7.943 | nM | CHEMBL458997 |
| 8.09 | Kd | 8.2 | nM | CHEMBL2172315 |
| 8.00 | Ki | 10 | nM | CHEMBL1974328 |
| 8.00 | Ki | 10 | nM | CHEMBL1164180 |
| 7.92 | Kd | 12 | nM | CRIZOTINIB |
| 7.90 | Ki | 12.59 | nM | CHEMBL1977138 |
| 7.90 | Ki | 12.59 | nM | CHEMBL1973961 |
| 7.85 | IC50 | 14 | nM | BRIGATINIB |
| 7.80 | Ki | 15.85 | nM | CENISERTIB |
| 7.80 | Ki | 15.85 | nM | CHEMBL1979690 |
| 7.72 | IC50 | 19 | nM | STAUROSPORINE |
| 7.70 | Ki | 19.95 | nM | CHEMBL1989708 |
| 7.70 | Ki | 19.95 | nM | CHEMBL1988581 |
| 7.60 | Ki | 25.12 | nM | CHEMBL21156 |
| 7.60 | Ki | 25.12 | nM | CHEMBL1967998 |
| 7.60 | Ki | 25.12 | nM | CHEMBL1997335 |
| 7.54 | IC50 | 29.2 | nM | STAUROSPORINE |
| 7.54 | IC50 | 29 | nM | CHEMBL1235786 |
| 7.54 | Kd | 29 | nM | CHEMBL1235786 |
| 7.50 | Ki | 31.62 | nM | CHEMBL2002099 |
| 7.50 | Ki | 31.62 | nM | CHEMBL2004290 |
| 7.50 | Ki | 31.62 | nM | CHEMBL1981047 |
| 7.50 | Ki | 31.62 | nM | CHEMBL2007421 |
| 7.44 | IC50 | 36.3 | nM | STAUROSPORINE |
| 7.43 | Kd | 37 | nM | STAUROSPORINE |
| 7.40 | Ki | 39.81 | nM | CHEMBL1983111 |
| 7.40 | Ki | 39.81 | nM | ILORASERTIB |
| 7.37 | IC50 | 43.1 | nM | CHEMBL3735648 |
| 7.34 | IC50 | 45.3 | nM | CHEMBL4067871 |
| 7.30 | Ki | 50.12 | nM | CHEMBL1825138 |
PubChem BioAssay actives
79 with measured affinity, of 392 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| Gilteritinib | 1894600: Inhibition of LTK (unknown origin) in presence of ATP | ic50 | 0.0003 | uM |
| 4-[[5-chloro-4-(4-hydroxy-4-methylcyclohexyl)oxy-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N,N-dimethyl-3-[(2R)-1,1,1-trifluoropropan-2-yl]oxybenzamide | 1551609: Inhibition of recombinant human GST-tagged LTK cytoplasmic domain (450 to 864 residues) expressed in baculovirus expression system by Z’-LYTE assay | ic50 | 0.0006 | uM |
| 5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine | 624743: Binding constant for LTK kinase domain | kd | 0.0009 | uM |
| 2-[[2-[[1-[2-(dimethylamino)acetyl]-5-methoxy-2,3-dihydroindol-6-yl]amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino]-6-fluoro-N-methylbenzamide | 624743: Binding constant for LTK kinase domain | kd | 0.0011 | uM |
| Crizotinib | 2161832: Inhibition of human N-terminal GST-fused LTK catalytic domain (498 to 796 residues) expressed in baculovirus expression system using Srctide as substrate measured after 1 hr by off-chip mobility shift assay relative to control | ic50 | 0.0018 | uM |
| (2R)-2-[5-[6-amino-5-[(1R)-1-[5-fluoro-2-(triazol-2-yl)phenyl]ethoxy]-3-pyridinyl]-4-methyl-1,3-thiazol-2-yl]propane-1,2-diol | 1074705: Inhibition of LTK (unknown origin) using Km levels of ATP | ic50 | 0.0020 | uM |
| 4-fluoro-N-[6-[[4-(2-hydroxypropan-2-yl)piperidin-1-yl]methyl]-1-[4-(propan-2-ylcarbamoyl)cyclohexyl]benzimidazol-2-yl]benzamide | 703117: Binding affinity to human LTK by Ambit titration assay | kd | 0.0025 | uM |
| (16R)-19-amino-13-fluoro-4,8,16-trimethyl-9-oxo-17-oxa-4,5,8,20-tetrazatetracyclo[16.3.1.02,6.010,15]docosa-1(22),2,5,11,13,18,20-heptaene-3-carbonitrile | 2187697: Inhibition of GST-tagged recombinant LTK (450 to 864 residues) (unknown origin) expressed in Insect cell | ic50 | 0.0027 | uM |
| Lorlatinib | 1153150: Inhibition of LTK (unknown origin) by TR-FRET-based Z’-LYTE assay | ic50 | 0.0027 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 1308967: Inhibition of LTK (unknown origin) incubated for 1 hr by spectrophotometric analysis | ic50 | 0.0036 | uM |
| N-[5-[[5-chloro-4-(2-propan-2-ylsulfonylanilino)pyrimidin-2-yl]amino]-2-[2-(dimethylamino)ethyl-methylamino]-4-methoxyphenyl]prop-2-enamide | 1584373: Inhibition of recombinant GST-tagged human LTK cytoplasmic domain (440 to 864 residues) expressed in baculovirus expression system by Z-LYTE assay | ic50 | 0.0040 | uM |
| 4-fluoro-2-methoxy-11-oxo-5-propan-2-yl-3-[(3R,5S)-3,4,5-trimethylpiperazin-1-yl]-6H-indolo[2,3-b]quinoline-8-carbonitrile | 1700707: Inhibition of human LTK | ic50 | 0.0063 | uM |
| 3,5-difluoro-N-[6-[[4-(2-hydroxypropan-2-yl)piperidin-1-yl]methyl]-1-[4-(propan-2-ylcarbamoyl)cyclohexyl]benzimidazol-2-yl]benzamide | 703117: Binding affinity to human LTK by Ambit titration assay | kd | 0.0082 | uM |
| Brigatinib | 2182803: Inhibition of human LTK using EAIYAAPFAKKK as substrate in presence of [gamma33P]-ATP by HotSpot assay | ic50 | 0.0140 | uM |
| 1-[3-methoxy-4-[[4-(2-propan-2-ylsulfonylanilino)-1H-pyrrolo[2,3-b]pyridin-6-yl]amino]phenyl]piperidin-4-ol | 2185959: Binding affinity to LTK (unknown origin) assessed as dissociation constant by Ambit kinase binding assay | kd | 0.0290 | uM |
| 6,6-dimethyl-8-[1-(oxan-4-ylmethyl)piperidin-4-yl]-11-oxo-5H-benzo[b]carbazole-3-carbonitrile | 1312459: Inhibition of recombinant LTK (unknown origin) using poly(Glu,Tyr)4:1 as substrate incubated for 60 mins by ELISA | ic50 | 0.0431 | uM |
| 4-chloro-2-[5-[[(1R)-2-hydroxy-1-phenylethyl]amino]-3-isoquinolin-6-yl-2-pyridinyl]phenol | 1450723: Inhibition of recombinant LTK (unknown origin) using poly (Glu,Tyr) 4:1 as substrate after 60 mins by ELISA | ic50 | 0.0453 | uM |
| N-[2-hydroxy-3-[C-phenyl-N-[4-(piperidin-1-ylmethyl)phenyl]carbonimidoyl]-1H-indol-5-yl]ethanesulfonamide | 389052: Binding affinity to human LTK | kd | 0.0520 | uM |
| 2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)-1,3,5-triazine-2,4-diamine | 2161832: Inhibition of human N-terminal GST-fused LTK catalytic domain (498 to 796 residues) expressed in baculovirus expression system using Srctide as substrate measured after 1 hr by off-chip mobility shift assay relative to control | ic50 | 0.0610 | uM |
| 5-[(1R)-1-(3,5-dichloro-4-pyridinyl)ethoxy]-3-[6-(2-methylsulfonyl-2,6-diazaspiro[3.3]heptan-6-yl)-3-pyridinyl]-1H-indazole | 2118406: Inhibition of human LTK by KINOMEscan analysis | ic50 | 0.0650 | uM |
| 5-fluoro-2-[5-[[(1R)-2-hydroxy-1-phenylethyl]amino]-3-(3-methyl-2H-indazol-5-yl)-2-pyridinyl]phenol | 1450723: Inhibition of recombinant LTK (unknown origin) using poly (Glu,Tyr) 4:1 as substrate after 60 mins by ELISA | ic50 | 0.0685 | uM |
| 1-N’-[3-fluoro-4-[6-methoxy-7-(3-morpholin-4-ylpropoxy)quinolin-4-yl]oxyphenyl]-1-N-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide | 624743: Binding constant for LTK kinase domain | kd | 0.1100 | uM |
| 4-fluoro-2-[5-[[(1R)-2-hydroxy-1-phenylethyl]amino]-3-(3-methyl-2H-indazol-5-yl)-2-pyridinyl]phenol | 1450723: Inhibition of recombinant LTK (unknown origin) using poly (Glu,Tyr) 4:1 as substrate after 60 mins by ELISA | ic50 | 0.1229 | uM |
| methyl 2-hydroxy-3-[N-[4-[methyl-[2-(4-methylpiperazin-1-yl)acetyl]amino]phenyl]-C-phenylcarbonimidoyl]-1H-indole-6-carboxylate | 624743: Binding constant for LTK kinase domain | kd | 0.1500 | uM |
| 1-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[6-(methylamino)pyrimidin-4-yl]oxyphenyl]urea | 435168: Binding constant for LTK kinase domain | kd | 0.1600 | uM |
| 3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]amino]ethoxy]ethoxy]ethoxy]ethyl]propanamide | 1526243: Binding affinity to recombinant full-length N-terminal His-FLAG-GST-tagged LTK (unknown origin) (498 to 796 residues) expressed in baculovirus infected Sf9 insect cells incubated for 1 hr by TR-FRET assay | kd | 0.1930 | uM |
| 3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-methylamino]ethoxy]ethoxy]ethoxy]ethyl]propanamide | 1526243: Binding affinity to recombinant full-length N-terminal His-FLAG-GST-tagged LTK (unknown origin) (498 to 796 residues) expressed in baculovirus infected Sf9 insect cells incubated for 1 hr by TR-FRET assay | kd | 0.1930 | uM |
| 4-[4-[(3-tert-butyl-1-quinolin-6-ylpyrazol-5-yl)carbamoylamino]-3-fluorophenoxy]-N-methylpyridine-2-carboxamide | 2168264: Inhibition of human wild type TYK1 using PolyEY as substrate preincubated for 2 hrs followed by ATP addition and measured every 2 mins for 2.5 hrs by spectrophotometric analysis | ic50 | 0.2600 | uM |
| 4-chloro-2-[5-[[(1R)-2-hydroxy-1-phenylethyl]amino]-3-(3-methyl-2H-indazol-5-yl)-2-pyridinyl]phenol | 1450723: Inhibition of recombinant LTK (unknown origin) using poly (Glu,Tyr) 4:1 as substrate after 60 mins by ELISA | ic50 | 0.2995 | uM |
| N-propyl-4-[[4-(2,2,2-trifluoroethylamino)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide | 1440133: Inhibition of LTK (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.3600 | uM |
| Ruxolitinib | 624743: Binding constant for LTK kinase domain | kd | 0.4400 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 507592: Binding affinity to LTK | kd | 0.4900 | uM |
| 1-[4-(3-amino-1H-indazol-4-yl)phenyl]-3-(2-fluoro-5-methylphenyl)urea | 435168: Binding constant for LTK kinase domain | kd | 0.5500 | uM |
| Vandetanib | 435168: Binding constant for LTK kinase domain | kd | 0.5500 | uM |
| 6-[[5-fluoro-2-(3,4,5-trimethoxyanilino)pyrimidin-4-yl]amino]-2,2-dimethyl-4H-pyrido[3,2-b][1,4]oxazin-3-one | 624743: Binding constant for LTK kinase domain | kd | 0.8000 | uM |
| Erlotinib | 435168: Binding constant for LTK kinase domain | kd | 0.8900 | uM |
| [4-[(E)-2-(1H-indazol-3-yl)ethenyl]phenyl]-piperazin-1-ylmethanone | 624743: Binding constant for LTK kinase domain | kd | 0.9200 | uM |
| 4-[[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-7H-pteridin-2-yl]amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide | 624743: Binding constant for LTK kinase domain | kd | 1.2000 | uM |
| 2-(4-amino-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-3-yl)-1H-indol-5-ol | 624743: Binding constant for LTK kinase domain | kd | 1.4000 | uM |
| 1-[3-tert-butyl-1-(4-methylphenyl)pyrazol-5-yl]-3-[4-(2-morpholin-4-ylethoxy)naphthalen-1-yl]urea | 435168: Binding constant for LTK kinase domain | kd | 1.4000 | uM |
| Sunitinib | 435168: Binding constant for LTK kinase domain | kd | 1.8000 | uM |
| 2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-1-methylpiperidin-4-yl]chromen-4-one | 435168: Binding constant for LTK kinase domain | kd | 2.2000 | uM |
| Upadacitinib | 2189521: Inhibition of LTK (unknown origin) by TR-FRET assay | ic50 | 2.7000 | uM |
| Bosutinib | 624743: Binding constant for LTK kinase domain | kd | 3.0000 | uM |
| Midostaurin | 435168: Binding constant for LTK kinase domain | kd | 3.0000 | uM |
| 2-[3-[[7-[3-[ethyl(2-hydroxyethyl)amino]propoxy]quinazolin-4-yl]amino]-1H-pyrazol-5-yl]-N-(3-fluorophenyl)acetamide | 435168: Binding constant for LTK kinase domain | kd | 3.2000 | uM |
| 5-[(Z)-(5-fluoro-2-oxo-1H-indol-3-ylidene)methyl]-N-[(2S)-2-hydroxy-3-morpholin-4-ylpropyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | 435168: Binding constant for LTK kinase domain | kd | 4.2000 | uM |
| 4-[(4-fluoro-2-methyl-1H-indol-5-yl)oxy]-6-methoxy-7-(3-pyrrolidin-1-ylpropoxy)quinazoline | 624743: Binding constant for LTK kinase domain | kd | 4.3000 | uM |
| N-[4-(3-chloro-4-fluoroanilino)-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]prop-2-enamide | 624743: Binding constant for LTK kinase domain | kd | 5.1000 | uM |
| 5,5-dimethyl-8-[[4-(2,2,2-trifluoroethylamino)furo[3,2-d]pyrimidin-2-yl]amino]-1H-4,1-benzoxazepin-2-one | 1440133: Inhibition of LTK (unknown origin) after 60 mins by TR-FRET assay | ic50 | 5.1100 | uM |
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, increases methylation | 3 |
| aristolochic acid I | increases expression | 1 |
| fluorene-9-bisphenol | decreases expression | 1 |
| arsenite | increases methylation | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Fulvestrant | decreases methylation | 1 |
| Arsenic | increases methylation | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Diazinon | increases methylation | 1 |
| Rifampin | increases expression | 1 |
| Smoke | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Asbestos, Serpentine | decreases methylation | 1 |
| Asbestos, Crocidolite | decreases methylation | 1 |
| Asbestos, Amosite | decreases methylation | 1 |
| Okadaic Acid | increases expression | 1 |
ChEMBL screening assays
248 unique, capped per target: 246 binding, 1 functional, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1035899 | Binding | Binding affinity to human LTK at 10 uM relative to control | Assessment of chemical coverage of kinome space and its implications for kinase drug discovery. — J Med Chem |
| CHEMBL1964115 | Functional | PUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: LTK | PubChem BioAssay data set |
| CHEMBL4023734 | ADMET | Inhibition of recombinant human cytoplasmic GST-tagged LTK expressed in baculovirus at 1 uM by Z’-LYTE assay | Discovery of GDC-0853: A Potent, Selective, and Noncovalent Bruton’s Tyrosine Kinase Inhibitor in Early Clinical Development. — J Med Chem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_SW07 | HAP1 LTK (-) 1 | Cancer cell line | Male |
| CVCL_SW08 | HAP1 LTK (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Targeted by drugs: Gilteritinib