MADCAM1-AS1

Summary

MADCAM1-AS1 (MADCAM1 antisense RNA 1, HGNC:55315) is a long non-coding RNA gene on chromosome 19p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55315
Approved symbol	MADCAM1-AS1
Name	MADCAM1 antisense RNA 1
Location	19p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266933
Ensembl biotype	lncRNA
Entrez	105372232
RNAcentral	URS0002A62572 — lncRNA, 1306 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000592413, ENST00000813738

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000592413 — 3 exons

Exon	Start	End
ENSE00001885597	490046	490353
ENSE00002861098	501541	501624
ENSE00002966233	507376	507833

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 81.84.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.84	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.57	silver quality
prefrontal cortex	UBERON:0000451	73.40	gold quality
frontal cortex	UBERON:0001870	67.72	gold quality
bone marrow cell	CL:0002092	67.54	silver quality
stromal cell of endometrium	CL:0002255	65.96	gold quality
sural nerve	UBERON:0015488	64.45	silver quality
duodenum	UBERON:0002114	63.55	gold quality
cerebral cortex	UBERON:0000956	63.31	gold quality
skeletal muscle tissue	UBERON:0001134	62.80	gold quality
cortical plate	UBERON:0005343	62.68	gold quality
ganglionic eminence	UBERON:0004023	62.56	gold quality
placenta	UBERON:0001987	62.53	gold quality
apex of heart	UBERON:0002098	62.53	gold quality
primary visual cortex	UBERON:0002436	62.11	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.01	gold quality
bone marrow	UBERON:0002371	61.97	gold quality
lower esophagus mucosa	UBERON:0035834	61.16	gold quality
superior frontal gyrus	UBERON:0002661	61.00	gold quality
anterior cingulate cortex	UBERON:0009835	60.55	gold quality
brain	UBERON:0000955	60.50	gold quality
Ammon’s horn	UBERON:0001954	60.46	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.12	gold quality
blood	UBERON:0000178	60.10	gold quality
right frontal lobe	UBERON:0002810	60.03	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	59.87	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	59.84	gold quality
putamen	UBERON:0001874	59.76	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.70	gold quality
temporal lobe	UBERON:0001871	59.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.