MAEA
gene geneOn this page
Also known as EMPGID9p44EMLPHLC-10
Summary
MAEA (macrophage erythroblast attacher, E3 ubiquitin ligase, HGNC:13731) is a protein-coding gene on chromosome 4p16.3, encoding E3 ubiquitin-protein transferase MAEA (Q7L5Y9). Core component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1. It is a selective cancer dependency (DepMap: 32.0% of cell lines).
This gene encodes a protein that mediates the attachment of erythroblasts to macrophages. This attachment promotes terminal maturation and enucleation of erythroblasts, presumably by suppressing apoptosis. The encoded protein is an integral membrane protein with the N-terminus on the extracellular side and the C-terminus on the cytoplasmic side of the cell. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 10296 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 57 total — 1 pathogenic
- Cancer dependency (DepMap): dependent in 32.0% of screened cell lines
- MANE Select transcript:
NM_001017405
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13731 |
| Approved symbol | MAEA |
| Name | macrophage erythroblast attacher, E3 ubiquitin ligase |
| Location | 4p16.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EMP, GID9, p44EMLP, HLC-10 |
| Ensembl gene | ENSG00000090316 |
| Ensembl biotype | protein_coding |
| OMIM | 606801 |
| Entrez | 10296 |
Gene structure
Transcript identifiers
Ensembl transcripts: 33 — 22 protein_coding, 4 retained_intron, 4 nonsense_mediated_decay, 3 protein_coding_CDS_not_defined
ENST00000264750, ENST00000303400, ENST00000502558, ENST00000503162, ENST00000503653, ENST00000503693, ENST00000505177, ENST00000505839, ENST00000506530, ENST00000508634, ENST00000509254, ENST00000509531, ENST00000510794, ENST00000510862, ENST00000512289, ENST00000512308, ENST00000512842, ENST00000513301, ENST00000514708, ENST00000515766, ENST00000868651, ENST00000868652, ENST00000868653, ENST00000868654, ENST00000868655, ENST00000868656, ENST00000926209, ENST00000926210, ENST00000926211, ENST00000926212, ENST00000926213, ENST00000967007, ENST00000967008
RefSeq mRNA: 6 — MANE Select: NM_001017405
NM_001017405, NM_001297430, NM_001297431, NM_001297432, NM_001297433, NM_005882
CCDS: CCDS33936, CCDS33937, CCDS75090, CCDS77887, CCDS77888
Canonical transcript exons
ENST00000303400 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001559530 | 1289891 | 1289982 |
| ENSE00002041873 | 1339074 | 1340137 |
| ENSE00003504244 | 1336861 | 1336994 |
| ENSE00003575604 | 1332757 | 1332865 |
| ENSE00003609062 | 1315397 | 1315600 |
| ENSE00003609198 | 1338422 | 1338617 |
| ENSE00003659530 | 1327627 | 1327703 |
| ENSE00003675900 | 1322381 | 1322503 |
| ENSE00003689873 | 1311979 | 1312161 |
Expression profiles
Bgee: expression breadth ubiquitous, 299 present calls, max score 96.58.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 40.8477 / max 339.9542, expressed in 1825 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 46550 | 40.8477 | 1825 |
Top tissues by expression
301 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle frontal gyrus | UBERON:0002702 | 96.58 | gold quality |
| frontal pole | UBERON:0002795 | 96.49 | gold quality |
| paraflocculus | UBERON:0005351 | 96.07 | gold quality |
| endometrium epithelium | UBERON:0004811 | 96.02 | gold quality |
| metanephros cortex | UBERON:0010533 | 95.98 | gold quality |
| blood | UBERON:0000178 | 95.75 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 95.63 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 95.53 | gold quality |
| adenohypophysis | UBERON:0002196 | 95.22 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 95.22 | gold quality |
| apex of heart | UBERON:0002098 | 95.07 | gold quality |
| pituitary gland | UBERON:0000007 | 94.90 | gold quality |
| transverse colon | UBERON:0001157 | 94.88 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 94.84 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 94.84 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 94.82 | gold quality |
| right adrenal gland | UBERON:0001233 | 94.81 | gold quality |
| left adrenal gland | UBERON:0001234 | 94.75 | gold quality |
| spleen | UBERON:0002106 | 94.72 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 94.66 | gold quality |
| granulocyte | CL:0000094 | 94.60 | gold quality |
| body of stomach | UBERON:0001161 | 94.56 | gold quality |
| adrenal cortex | UBERON:0001235 | 94.52 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 94.50 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 94.49 | gold quality |
| skin of leg | UBERON:0001511 | 94.38 | gold quality |
| tibia | UBERON:0000979 | 94.36 | gold quality |
| esophagus mucosa | UBERON:0002469 | 94.34 | gold quality |
| thyroid gland | UBERON:0002046 | 94.27 | gold quality |
| left uterine tube | UBERON:0001303 | 94.22 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.11 |
| E-MTAB-7249 | no | 1963.45 |
| E-MTAB-6524 | no | 92.00 |
| E-CURD-112 | no | 2.59 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
47 targeting MAEA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-139-5P | 99.80 | 69.50 | 1399 |
| HSA-MIR-2052 | 99.79 | 69.37 | 2031 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-4465 | 99.71 | 72.56 | 2096 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-582-5P | 99.47 | 70.79 | 2635 |
| HSA-MIR-5697 | 99.39 | 67.74 | 1249 |
| HSA-MIR-4786-3P | 99.36 | 68.35 | 1390 |
| HSA-MIR-6853-3P | 99.36 | 70.79 | 1558 |
| HSA-MIR-133A-3P | 99.27 | 71.53 | 1270 |
| HSA-MIR-133B | 99.27 | 71.53 | 1270 |
| HSA-MIR-5690 | 99.25 | 67.58 | 1012 |
| HSA-MIR-6744-3P | 99.22 | 64.41 | 972 |
| HSA-MIR-6809-5P | 99.13 | 68.45 | 1223 |
| HSA-MIR-4757-5P | 99.12 | 64.51 | 981 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 32.0% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 7)
- These results suggest that Emp undergoes dynamic rearrangements within the nuclear architecture that are correlated with cell division. (PMID:16510120)
- RanBPM, ARMC8alpha, ARMC8beta, Muskelin, p48EMLP, and p44CTLH form complexes in cells. (PMID:17467196)
- Emp expression correlates with erythroblastic island formation and has an important function for bone marrow hematopoiesis. (PMID:23566571)
- The MAEA gene polymorphism rs6815464 was associated with low hip bone mineral density in postmenopausal Japanese women. (PMID:30890479)
- MAEA gene polymorphism was independently associated with severe periodontitis (PMID:31005685)
- Common variants in MAEA gene contributed the susceptibility to osteoporosis in Han Chinese postmenopausal women. (PMID:33423677)
- E3 ligase MAEA-mediated ubiquitination and degradation of PHD3 promotes glioblastoma progression. (PMID:36882523)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | maea | ENSDARG00000053691 |
| mus_musculus | Maea | ENSMUSG00000079562 |
| rattus_norvegicus | Maea | ENSRNOG00000005397 |
| drosophila_melanogaster | Kaz | FBGN0051357 |
| caenorhabditis_elegans | maea-1 | WBGENE00012366 |
Paralogs (2): RMND5B (ENSG00000145916), RMND5A (ENSG00000153561)
Protein
Protein identifiers
E3 ubiquitin-protein transferase MAEA — Q7L5Y9 (reviewed: Q7L5Y9)
Alternative names: Cell proliferation-inducing gene 5 protein, Erythroblast macrophage protein, Human lung cancer oncogene 10 protein, Macrophage erythroblast attacher, P44EMLP
All UniProt accessions (11): Q7L5Y9, B4DQT1, B4DVN3, D6R8Z3, D6RA86, D6RDW4, D6RE80, D6REW7, D6RIB6, D6RID6, E7ESC7
UniProt curated annotations — full annotation on UniProt →
Function. Core component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1. MAEA and RMND5A are both required for catalytic activity of the CTLH E3 ubiquitin-protein ligase complex. MAEA is required for normal cell proliferation. The CTLH E3 ubiquitin-protein ligase complex is not required for the degradation of enzymes involved in gluconeogenesis, such as FBP1. Plays a role in erythroblast enucleation during erythrocyte maturation and in the development of mature macrophages. Mediates the attachment of erythroid cell to mature macrophages; this MAEA-mediated contact inhibits erythroid cell apoptosis. Participates in erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.
Subunit / interactions. Identified in the CTLH complex that contains GID4, RANBP9 and/or RANBP10, MKLN1, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, ARMC8, WDR26 and YPEL5. Within this complex, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, WDR26, and RANBP9 and/or RANBP10 form the catalytic core, while GID4, MKLN1, ARMC8 and YPEL5 have ancillary roles. Interacts with F-actin.
Subcellular location. Cytoplasm. Nucleus. Nucleoplasm. Nucleus matrix. Cell membrane. Cytoskeleton.
Tissue specificity. Detected at macrophage membranes (at protein level). Ubiquitous.
Post-translational modifications. Autoubiquitinated as component of the CTLH E3 ubiquitin-protein ligase complex (in vitro).
Domain organisation. The expected RING-type zinc finger domain is highly divergent and most of the expected Cys residues are not conserved. Still, the protein is required for CTLH complex E3 ubiquitin-protein transferase activity. In addition, the conserved Cys-314 in this highly divergent region is required for ubiquitination by the yeast GID complex, suggesting a direct role in catalyzing ubiquitination.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q7L5Y9-1 | 1 | yes |
| Q7L5Y9-2 | 2 | |
| Q7L5Y9-3 | 3 | |
| Q7L5Y9-4 | 4 | |
| Q7L5Y9-5 | 5 |
RefSeq proteins (6): NP_001017405, NP_001284359, NP_001284360, NP_001284361, NP_001284362, NP_005873 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006594 | LisH | Conserved_site |
| IPR006595 | CTLH_C | Domain |
| IPR013144 | CRA_dom | Domain |
| IPR024964 | CTLH/CRA | Domain |
| IPR044063 | ZF_RING_GID | Domain |
| IPR045098 | Fyv10_fam | Family |
Pfam: PF10607
UniProt features (50 total): helix 22, splice variant 6, sequence conflict 6, turn 4, strand 4, domain 2, chain 1, sequence variant 1, zinc finger region 1, region of interest 1, site 1, modified residue 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8PJN | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7L5Y9-F1 | 91.80 | 0.81 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 314 (essential for ubiquitin ligase activity)
Post-translational modifications (1): 28
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9861718 | Regulation of pyruvate metabolism |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-70268 | Pyruvate metabolism |
MSigDB gene sets: 203 (showing top):
GSE45365_NK_CELL_VS_CD8_TCELL_DN, GOBP_MYELOID_CELL_DIFFERENTIATION, AHRARNT_01, GOBP_MYELOID_CELL_HOMEOSTASIS, GCM_GSPT1, GOBP_MYELOID_CELL_DEVELOPMENT, GOBP_ERYTHROCYTE_HOMEOSTASIS, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, TGACCTY_ERR1_Q2, YY1_Q6, GOBP_ANATOMICAL_STRUCTURE_MATURATION, MODULE_239, YY1_02, MORF_CTBP1, GOBP_CELL_MATURATION
GO Biological Process (9): cytoskeleton organization (GO:0007010), cell adhesion (GO:0007155), regulation of mitotic cell cycle (GO:0007346), negative regulation of myeloid cell apoptotic process (GO:0033033), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), erythrocyte maturation (GO:0043249), enucleate erythrocyte development (GO:0048822), cell division (GO:0051301), erythrocyte development (GO:0048821)
GO Molecular Function (7): actin binding (GO:0003779), zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (13): ubiquitin ligase complex (GO:0000151), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), spindle (GO:0005819), actomyosin contractile ring (GO:0005826), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), nuclear matrix (GO:0016363), GID complex (GO:0034657), actin cytoskeleton (GO:0015629), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Pyruvate metabolism | 1 |
| Metabolism | 1 |
| Aerobic respiration and respiratory electron transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| cellular process | 2 |
| erythrocyte development | 2 |
| nuclear lumen | 2 |
| intracellular membraneless organelle | 2 |
| organelle organization | 1 |
| mitotic cell cycle | 1 |
| regulation of cell cycle | 1 |
| myeloid cell apoptotic process | 1 |
| regulation of myeloid cell apoptotic process | 1 |
| negative regulation of apoptotic process | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| cell maturation | 1 |
| enucleate erythrocyte differentiation | 1 |
| erythrocyte differentiation | 1 |
| myeloid cell development | 1 |
| cytoskeletal protein binding | 1 |
| transition metal ion binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular protein-containing complex | 1 |
| transferase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| microtubule cytoskeleton | 1 |
| cortical actin cytoskeleton | 1 |
| cell division site | 1 |
| contractile ring | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| ubiquitin ligase complex | 1 |
| cytoskeleton | 1 |
Protein interactions and networks
STRING
1400 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MAEA | ARMC8 | Q8IUR7 | 870 |
| MAEA | VTN | P01141 | 810 |
| MAEA | GID8 | Q9NWU2 | 804 |
| MAEA | WDR26 | Q9H7D7 | 799 |
| MAEA | GID4 | Q8IVV7 | 787 |
| MAEA | MKLN1 | Q9UL63 | 756 |
| MAEA | ICAM4 | Q14773 | 734 |
| MAEA | RANBP10 | Q6VN20 | 707 |
| MAEA | YPEL5 | P62699 | 697 |
| MAEA | RANBP9 | Q96S59 | 632 |
| MAEA | R3HDML | Q9H3Y0 | 596 |
| MAEA | KCNK16 | Q96T55 | 590 |
| MAEA | RMND5A | Q9H871 | 582 |
| MAEA | RMND5B | Q96G75 | 577 |
| MAEA | GCC1 | Q96CN9 | 571 |
IntAct
177 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARMC8 | HTRA2 | psi-mi:“MI:0914”(association) | 0.750 |
| GID8 | MAEA | psi-mi:“MI:0914”(association) | 0.730 |
| GID8 | PGRMC2 | psi-mi:“MI:0914”(association) | 0.640 |
| RANBP10 | MAEA | psi-mi:“MI:0914”(association) | 0.640 |
| RANBP9 | YPEL5 | psi-mi:“MI:0914”(association) | 0.640 |
| CRIPTO | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| CCDC120 | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFS6 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| PRG2 | YPEL5 | psi-mi:“MI:0914”(association) | 0.640 |
| CAMKV | AP3B1 | psi-mi:“MI:0914”(association) | 0.640 |
| OSBPL5 | NAGLU | psi-mi:“MI:0914”(association) | 0.640 |
| GID8 | HTRA2 | psi-mi:“MI:0914”(association) | 0.610 |
| NAPA | NBAS | psi-mi:“MI:0914”(association) | 0.530 |
| INSL6 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| JPH4 | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.530 |
| GPS2 | DCTN6 | psi-mi:“MI:0914”(association) | 0.530 |
| PDGFD | DCTN6 | psi-mi:“MI:0914”(association) | 0.530 |
| TIGD5 | P4HA2 | psi-mi:“MI:0914”(association) | 0.530 |
| GREM2 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| EMILIN3 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| PRICKLE3 | SIAH2 | psi-mi:“MI:0914”(association) | 0.530 |
| CBFA2T3 | CBFA2T2 | psi-mi:“MI:0914”(association) | 0.530 |
| BMP1 | TLL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PRG3 | ZNF324 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (235): MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), RANBP9 (Co-fractionation), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS)
ESM2 similar proteins: A0A2R8QFQ6, A0A2R8RWN9, A0JN27, D3Z7P3, F1LTR1, O15294, O60907, O89050, O94925, P13264, P56558, P81436, Q07G17, Q13042, Q13888, Q15303, Q27HV0, Q28D01, Q2TBV5, Q3ULA2, Q4R8H1, Q4R9A8, Q4VC33, Q5F398, Q5JUK3, Q5R532, Q5RB35, Q5RKJ1, Q5SP67, Q5SRY7, Q61527, Q62956, Q6GR10, Q6P1K8, Q7L5Y9, Q7RTP6, Q7SXR3, Q8C6G8, Q8CGY8, Q8CJ19
Diamond homologs: A1C9R2, A1CZJ5, A2R9P6, A4RK04, Q0CA25, Q0TYW1, Q1DTI6, Q2H991, Q3MHJ2, Q4R9A8, Q4VC33, Q4WTQ4, Q5AS80, Q5F398, Q5R532, Q5RKJ1, Q6GR10, Q7L5Y9, Q7S2X0, Q7SXR3, Q9M2V9, Q9URU9, Q6C435, Q32L52, E7FGY2, Q6PC55, Q9D7M1, Q9NWU2
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | MAEA | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 198 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of pyruvate metabolism | 10 | 41.1× | 6e-12 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
57 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 42 |
| Likely benign | 2 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 979468 | GRCh37/hg19 4p16.3-16.2(chr4:68345-5831521)x1 | Pathogenic |
SpliceAI
2641 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:1311975:CCA:C | acceptor_loss | 1.0000 |
| 4:1311976:CA:C | acceptor_loss | 1.0000 |
| 4:1311977:A:AG | acceptor_gain | 1.0000 |
| 4:1311977:A:AT | acceptor_loss | 1.0000 |
| 4:1311977:AG:A | acceptor_gain | 1.0000 |
| 4:1311977:AGGT:A | acceptor_gain | 1.0000 |
| 4:1311978:G:A | acceptor_gain | 1.0000 |
| 4:1311978:G:GA | acceptor_gain | 1.0000 |
| 4:1311978:GGT:G | acceptor_gain | 1.0000 |
| 4:1311978:GGTG:G | acceptor_gain | 1.0000 |
| 4:1311978:GGTGC:G | acceptor_gain | 1.0000 |
| 4:1312157:GGAAG:G | donor_gain | 1.0000 |
| 4:1312158:G:GT | donor_gain | 1.0000 |
| 4:1312159:A:T | donor_gain | 1.0000 |
| 4:1312159:AAGG:A | donor_loss | 1.0000 |
| 4:1312160:AGGT:A | donor_loss | 1.0000 |
| 4:1312162:G:GA | donor_loss | 1.0000 |
| 4:1312163:T:A | donor_loss | 1.0000 |
| 4:1315389:T:TA | acceptor_gain | 1.0000 |
| 4:1315390:G:A | acceptor_gain | 1.0000 |
| 4:1315597:CGAGG:C | donor_loss | 1.0000 |
| 4:1315599:AG:A | donor_loss | 1.0000 |
| 4:1315600:GG:G | donor_loss | 1.0000 |
| 4:1315601:G:A | donor_loss | 1.0000 |
| 4:1315602:T:G | donor_loss | 1.0000 |
| 4:1322379:A:G | acceptor_gain | 1.0000 |
| 4:1327622:CTCA:C | acceptor_loss | 1.0000 |
| 4:1327623:TCA:T | acceptor_loss | 1.0000 |
| 4:1327624:CAGA:C | acceptor_loss | 1.0000 |
| 4:1327625:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
2625 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:1311995:T:C | L29P | 1.000 |
| 4:1312006:T:C | F33L | 1.000 |
| 4:1312008:T:A | F33L | 1.000 |
| 4:1312008:T:G | F33L | 1.000 |
| 4:1312009:C:A | R34S | 1.000 |
| 4:1312010:G:C | R34P | 1.000 |
| 4:1312021:A:G | K38E | 1.000 |
| 4:1312023:G:C | K38N | 1.000 |
| 4:1312023:G:T | K38N | 1.000 |
| 4:1312034:G:C | R42P | 1.000 |
| 4:1315524:G:C | R127P | 1.000 |
| 4:1315542:T:C | L133P | 1.000 |
| 4:1315545:T:C | L134P | 1.000 |
| 4:1315569:C:A | A142D | 1.000 |
| 4:1322433:T:C | L170P | 1.000 |
| 4:1322458:C:G | C178W | 1.000 |
| 4:1322465:T:A | W181R | 1.000 |
| 4:1322465:T:C | W181R | 1.000 |
| 4:1322466:G:C | W181S | 1.000 |
| 4:1322467:G:C | W181C | 1.000 |
| 4:1322467:G:T | W181C | 1.000 |
| 4:1322490:T:A | L189H | 1.000 |
| 4:1322490:T:C | L189P | 1.000 |
| 4:1327697:C:A | A217D | 1.000 |
| 4:1336903:T:C | F270L | 1.000 |
| 4:1336905:C:A | F270L | 1.000 |
| 4:1336905:C:G | F270L | 1.000 |
| 4:1336964:T:C | L290P | 1.000 |
| 4:1336972:G:C | G293R | 1.000 |
| 4:1336973:G:A | G293D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000006042 (4:1336412 G>A), RS1000019708 (4:1327408 C>G,T), RS1000047985 (4:1312418 G>C,T), RS1000099982 (4:1312642 C>A,T), RS1000137395 (4:1303945 T>C,G), RS1000158158 (4:1331451 G>A), RS1000176598 (4:1293019 G>A,T), RS1000259395 (4:1325145 G>A), RS1000314311 (4:1318608 G>A), RS1000324120 (4:1318749 TC>T), RS1000342117 (4:1296462 C>A,G,T), RS1000430723 (4:1320758 C>A,G,T), RS1000482993 (4:1320614 C>T), RS1000523562 (4:1332193 A>C), RS1000653906 (4:1287932 T>C)
Disease associations
OMIM: gene MIM:606801 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001351_1 | Type 2 diabetes | 2.000000e-20 |
| GCST001762_858 | Obesity-related traits | 2.000000e-06 |
| GCST002128_3 | Type 2 diabetes | 2.000000e-07 |
| GCST003400_35 | Type 2 diabetes | 1.000000e-12 |
| GCST004894_48 | Type 2 diabetes | 1.000000e-08 |
| GCST006626_39 | Pulse pressure | 1.000000e-10 |
| GCST007847_14 | Type 2 diabetes | 1.000000e-24 |
| GCST007847_87 | Type 2 diabetes | 7.000000e-10 |
| GCST009379_153 | Type 2 diabetes | 9.000000e-18 |
| GCST010118_34 | Type 2 diabetes | 3.000000e-16 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005763 | pulse pressure measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | increases abundance, decreases expression, affects expression | 2 |
| Arsenic | affects methylation, decreases expression, increases abundance | 2 |
| Valproic Acid | increases expression, affects expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| methylselenic acid | decreases expression | 1 |
| kojic acid | increases expression | 1 |
| sodium arsenite | decreases expression, increases abundance | 1 |
| ferrous chloride | decreases expression | 1 |
| 7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-one | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Asbestos | affects expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Diuron | affects expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Smoke | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Cadmium Chloride | increases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Cellosaurus cell lines
6 cell lines: 6 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1NL | Abcam K-562 MAEA KO | Cancer cell line | Female |
| CVCL_D2K7 | Abcam Raji MAEA KO | Cancer cell line | Male |
| CVCL_D8PL | Ubigene HCT 116 MAEA KO | Cancer cell line | Male |
| CVCL_E2BR | HAP1 MAEA (-) 1 | Cancer cell line | Male |
| CVCL_E2BS | HAP1 MAEA (-) 2 | Cancer cell line | Male |
| CVCL_UQ88 | Abcam Jurkat MAEA KO | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.