MAEA

gene
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Also known as EMPGID9p44EMLPHLC-10

Summary

MAEA (macrophage erythroblast attacher, E3 ubiquitin ligase, HGNC:13731) is a protein-coding gene on chromosome 4p16.3, encoding E3 ubiquitin-protein transferase MAEA (Q7L5Y9). Core component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1. It is a selective cancer dependency (DepMap: 32.0% of cell lines).

This gene encodes a protein that mediates the attachment of erythroblasts to macrophages. This attachment promotes terminal maturation and enucleation of erythroblasts, presumably by suppressing apoptosis. The encoded protein is an integral membrane protein with the N-terminus on the extracellular side and the C-terminus on the cytoplasmic side of the cell. Alternative splicing results in multiple transcript variants.

Source: NCBI Gene 10296 — RefSeq curated summary.

At a glance

  • GWAS associations: 10
  • Clinical variants (ClinVar): 57 total — 1 pathogenic
  • Cancer dependency (DepMap): dependent in 32.0% of screened cell lines
  • MANE Select transcript: NM_001017405

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:13731
Approved symbolMAEA
Namemacrophage erythroblast attacher, E3 ubiquitin ligase
Location4p16.3
Locus typegene with protein product
StatusApproved
AliasesEMP, GID9, p44EMLP, HLC-10
Ensembl geneENSG00000090316
Ensembl biotypeprotein_coding
OMIM606801
Entrez10296

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 22 protein_coding, 4 retained_intron, 4 nonsense_mediated_decay, 3 protein_coding_CDS_not_defined

ENST00000264750, ENST00000303400, ENST00000502558, ENST00000503162, ENST00000503653, ENST00000503693, ENST00000505177, ENST00000505839, ENST00000506530, ENST00000508634, ENST00000509254, ENST00000509531, ENST00000510794, ENST00000510862, ENST00000512289, ENST00000512308, ENST00000512842, ENST00000513301, ENST00000514708, ENST00000515766, ENST00000868651, ENST00000868652, ENST00000868653, ENST00000868654, ENST00000868655, ENST00000868656, ENST00000926209, ENST00000926210, ENST00000926211, ENST00000926212, ENST00000926213, ENST00000967007, ENST00000967008

RefSeq mRNA: 6 — MANE Select: NM_001017405 NM_001017405, NM_001297430, NM_001297431, NM_001297432, NM_001297433, NM_005882

CCDS: CCDS33936, CCDS33937, CCDS75090, CCDS77887, CCDS77888

Canonical transcript exons

ENST00000303400 — 9 exons

ExonStartEnd
ENSE0000155953012898911289982
ENSE0000204187313390741340137
ENSE0000350424413368611336994
ENSE0000357560413327571332865
ENSE0000360906213153971315600
ENSE0000360919813384221338617
ENSE0000365953013276271327703
ENSE0000367590013223811322503
ENSE0000368987313119791312161

Expression profiles

Bgee: expression breadth ubiquitous, 299 present calls, max score 96.58.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 40.8477 / max 339.9542, expressed in 1825 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
4655040.84771825

Top tissues by expression

301 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
middle frontal gyrusUBERON:000270296.58gold quality
frontal poleUBERON:000279596.49gold quality
paraflocculusUBERON:000535196.07gold quality
endometrium epitheliumUBERON:000481196.02gold quality
metanephros cortexUBERON:001053395.98gold quality
bloodUBERON:000017895.75gold quality
mucosa of transverse colonUBERON:000499195.63gold quality
Brodmann (1909) area 10UBERON:001354195.53gold quality
adenohypophysisUBERON:000219695.22gold quality
right adrenal gland cortexUBERON:003582795.22gold quality
apex of heartUBERON:000209895.07gold quality
pituitary glandUBERON:000000794.90gold quality
transverse colonUBERON:000115794.88gold quality
left lobe of thyroid glandUBERON:000112094.84gold quality
middle temporal gyrusUBERON:000277194.84gold quality
right lobe of thyroid glandUBERON:000111994.82gold quality
right adrenal glandUBERON:000123394.81gold quality
left adrenal glandUBERON:000123494.75gold quality
spleenUBERON:000210694.72gold quality
left adrenal gland cortexUBERON:003582594.66gold quality
granulocyteCL:000009494.60gold quality
body of stomachUBERON:000116194.56gold quality
adrenal cortexUBERON:000123594.52gold quality
small intestine Peyer’s patchUBERON:000345494.50gold quality
lower esophagus mucosaUBERON:003583494.49gold quality
skin of legUBERON:000151194.38gold quality
tibiaUBERON:000097994.36gold quality
esophagus mucosaUBERON:000246994.34gold quality
thyroid glandUBERON:000204694.27gold quality
left uterine tubeUBERON:000130394.22gold quality

Single-cell (SCXA)

Detected in 4 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes5.11
E-MTAB-7249no1963.45
E-MTAB-6524no92.00
E-CURD-112no2.59

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

47 targeting MAEA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-9-5P100.0072.282361
HSA-MIR-4455100.0065.481587
HSA-MIR-4262100.0073.263931
HSA-MIR-6873-3P100.0071.422626
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-548AW99.9972.573559
HSA-MIR-118499.9968.191458
HSA-MIR-1236-3P99.9468.041695
HSA-MIR-539-5P99.9370.302855
HSA-MIR-129799.9173.413162
HSA-MIR-368699.9070.532432
HSA-MIR-579-3P99.8671.663628
HSA-MIR-5003-3P99.8569.292517
HSA-MIR-664B-3P99.8471.653590
HSA-MIR-139-5P99.8069.501399
HSA-MIR-205299.7969.372031
HSA-MIR-26A-5P99.7873.522303
HSA-MIR-26B-5P99.7873.512305
HSA-MIR-446599.7172.562096
HSA-MIR-3158-5P99.6567.511763
HSA-MIR-582-5P99.4770.792635
HSA-MIR-569799.3967.741249
HSA-MIR-4786-3P99.3668.351390
HSA-MIR-6853-3P99.3670.791558
HSA-MIR-133A-3P99.2771.531270
HSA-MIR-133B99.2771.531270
HSA-MIR-569099.2567.581012
HSA-MIR-6744-3P99.2264.41972
HSA-MIR-6809-5P99.1368.451223
HSA-MIR-4757-5P99.1264.51981

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 32.0% of screened cell lines.

Literature-anchored findings (GeneRIF, showing 7)

  • These results suggest that Emp undergoes dynamic rearrangements within the nuclear architecture that are correlated with cell division. (PMID:16510120)
  • RanBPM, ARMC8alpha, ARMC8beta, Muskelin, p48EMLP, and p44CTLH form complexes in cells. (PMID:17467196)
  • Emp expression correlates with erythroblastic island formation and has an important function for bone marrow hematopoiesis. (PMID:23566571)
  • The MAEA gene polymorphism rs6815464 was associated with low hip bone mineral density in postmenopausal Japanese women. (PMID:30890479)
  • MAEA gene polymorphism was independently associated with severe periodontitis (PMID:31005685)
  • Common variants in MAEA gene contributed the susceptibility to osteoporosis in Han Chinese postmenopausal women. (PMID:33423677)
  • E3 ligase MAEA-mediated ubiquitination and degradation of PHD3 promotes glioblastoma progression. (PMID:36882523)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriomaeaENSDARG00000053691
mus_musculusMaeaENSMUSG00000079562
rattus_norvegicusMaeaENSRNOG00000005397
drosophila_melanogasterKazFBGN0051357
caenorhabditis_elegansmaea-1WBGENE00012366

Paralogs (2): RMND5B (ENSG00000145916), RMND5A (ENSG00000153561)

Protein

Protein identifiers

E3 ubiquitin-protein transferase MAEAQ7L5Y9 (reviewed: Q7L5Y9)

Alternative names: Cell proliferation-inducing gene 5 protein, Erythroblast macrophage protein, Human lung cancer oncogene 10 protein, Macrophage erythroblast attacher, P44EMLP

All UniProt accessions (11): Q7L5Y9, B4DQT1, B4DVN3, D6R8Z3, D6RA86, D6RDW4, D6RE80, D6REW7, D6RIB6, D6RID6, E7ESC7

UniProt curated annotations — full annotation on UniProt →

Function. Core component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1. MAEA and RMND5A are both required for catalytic activity of the CTLH E3 ubiquitin-protein ligase complex. MAEA is required for normal cell proliferation. The CTLH E3 ubiquitin-protein ligase complex is not required for the degradation of enzymes involved in gluconeogenesis, such as FBP1. Plays a role in erythroblast enucleation during erythrocyte maturation and in the development of mature macrophages. Mediates the attachment of erythroid cell to mature macrophages; this MAEA-mediated contact inhibits erythroid cell apoptosis. Participates in erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Subunit / interactions. Identified in the CTLH complex that contains GID4, RANBP9 and/or RANBP10, MKLN1, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, ARMC8, WDR26 and YPEL5. Within this complex, MAEA, RMND5A (or alternatively its paralog RMND5B), GID8, WDR26, and RANBP9 and/or RANBP10 form the catalytic core, while GID4, MKLN1, ARMC8 and YPEL5 have ancillary roles. Interacts with F-actin.

Subcellular location. Cytoplasm. Nucleus. Nucleoplasm. Nucleus matrix. Cell membrane. Cytoskeleton.

Tissue specificity. Detected at macrophage membranes (at protein level). Ubiquitous.

Post-translational modifications. Autoubiquitinated as component of the CTLH E3 ubiquitin-protein ligase complex (in vitro).

Domain organisation. The expected RING-type zinc finger domain is highly divergent and most of the expected Cys residues are not conserved. Still, the protein is required for CTLH complex E3 ubiquitin-protein transferase activity. In addition, the conserved Cys-314 in this highly divergent region is required for ubiquitination by the yeast GID complex, suggesting a direct role in catalyzing ubiquitination.

Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.

Isoforms (5)

UniProt IDNamesCanonical?
Q7L5Y9-11yes
Q7L5Y9-22
Q7L5Y9-33
Q7L5Y9-44
Q7L5Y9-55

RefSeq proteins (6): NP_001017405, NP_001284359, NP_001284360, NP_001284361, NP_001284362, NP_005873 (=MANE)

Domains & families (InterPro)

IDNameType
IPR006594LisHConserved_site
IPR006595CTLH_CDomain
IPR013144CRA_domDomain
IPR024964CTLH/CRADomain
IPR044063ZF_RING_GIDDomain
IPR045098Fyv10_famFamily

Pfam: PF10607

UniProt features (50 total): helix 22, splice variant 6, sequence conflict 6, turn 4, strand 4, domain 2, chain 1, sequence variant 1, zinc finger region 1, region of interest 1, site 1, modified residue 1

Structure

Experimental structures (PDB)

1 structures.

PDBMethodResolution (Å)
8PJNELECTRON MICROSCOPY3.4

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q7L5Y9-F191.800.81

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 314 (essential for ubiquitin ligase activity)

Post-translational modifications (1): 28

Function

Pathways and Gene Ontology

Reactome pathways

4 pathways

IDPathway
R-HSA-9861718Regulation of pyruvate metabolism
R-HSA-1428517Aerobic respiration and respiratory electron transport
R-HSA-1430728Metabolism
R-HSA-70268Pyruvate metabolism

MSigDB gene sets: 203 (showing top): GSE45365_NK_CELL_VS_CD8_TCELL_DN, GOBP_MYELOID_CELL_DIFFERENTIATION, AHRARNT_01, GOBP_MYELOID_CELL_HOMEOSTASIS, GCM_GSPT1, GOBP_MYELOID_CELL_DEVELOPMENT, GOBP_ERYTHROCYTE_HOMEOSTASIS, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, TGACCTY_ERR1_Q2, YY1_Q6, GOBP_ANATOMICAL_STRUCTURE_MATURATION, MODULE_239, YY1_02, MORF_CTBP1, GOBP_CELL_MATURATION

GO Biological Process (9): cytoskeleton organization (GO:0007010), cell adhesion (GO:0007155), regulation of mitotic cell cycle (GO:0007346), negative regulation of myeloid cell apoptotic process (GO:0033033), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), erythrocyte maturation (GO:0043249), enucleate erythrocyte development (GO:0048822), cell division (GO:0051301), erythrocyte development (GO:0048821)

GO Molecular Function (7): actin binding (GO:0003779), zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)

GO Cellular Component (13): ubiquitin ligase complex (GO:0000151), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), spindle (GO:0005819), actomyosin contractile ring (GO:0005826), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), nuclear matrix (GO:0016363), GID complex (GO:0034657), actin cytoskeleton (GO:0015629), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-3 pathways:

CategoryPathways
Pyruvate metabolism1
Metabolism1
Aerobic respiration and respiratory electron transport1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure5
cellular process2
erythrocyte development2
nuclear lumen2
intracellular membraneless organelle2
organelle organization1
mitotic cell cycle1
regulation of cell cycle1
myeloid cell apoptotic process1
regulation of myeloid cell apoptotic process1
negative regulation of apoptotic process1
ubiquitin-dependent protein catabolic process1
proteasomal protein catabolic process1
cell maturation1
enucleate erythrocyte differentiation1
erythrocyte differentiation1
myeloid cell development1
cytoskeletal protein binding1
transition metal ion binding1
ubiquitin-protein transferase activity1
ubiquitin-like protein ligase activity1
ubiquitin-like protein transferase activity1
binding1
catalytic activity1
cation binding1
intracellular protein-containing complex1
transferase complex1
intracellular membrane-bounded organelle1
intracellular anatomical structure1
microtubule cytoskeleton1
cortical actin cytoskeleton1
cell division site1
contractile ring1
cytoplasm1
membrane1
cell periphery1
ubiquitin ligase complex1
cytoskeleton1

Protein interactions and networks

STRING

1400 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MAEAARMC8Q8IUR7870
MAEAVTNP01141810
MAEAGID8Q9NWU2804
MAEAWDR26Q9H7D7799
MAEAGID4Q8IVV7787
MAEAMKLN1Q9UL63756
MAEAICAM4Q14773734
MAEARANBP10Q6VN20707
MAEAYPEL5P62699697
MAEARANBP9Q96S59632
MAEAR3HDMLQ9H3Y0596
MAEAKCNK16Q96T55590
MAEARMND5AQ9H871582
MAEARMND5BQ96G75577
MAEAGCC1Q96CN9571

IntAct

177 interactions, top by confidence:

ABTypeScore
ARMC8HTRA2psi-mi:“MI:0914”(association)0.750
GID8MAEApsi-mi:“MI:0914”(association)0.730
GID8PGRMC2psi-mi:“MI:0914”(association)0.640
RANBP10MAEApsi-mi:“MI:0914”(association)0.640
RANBP9YPEL5psi-mi:“MI:0914”(association)0.640
CRIPTOAIPpsi-mi:“MI:0914”(association)0.640
CCDC120AIPpsi-mi:“MI:0914”(association)0.640
NDUFS6NDUFS8psi-mi:“MI:0914”(association)0.640
PRG2YPEL5psi-mi:“MI:0914”(association)0.640
CAMKVAP3B1psi-mi:“MI:0914”(association)0.640
OSBPL5NAGLUpsi-mi:“MI:0914”(association)0.640
GID8HTRA2psi-mi:“MI:0914”(association)0.610
NAPANBASpsi-mi:“MI:0914”(association)0.530
INSL6POTEFpsi-mi:“MI:0914”(association)0.530
JPH4ZSWIM8psi-mi:“MI:0914”(association)0.530
GPS2DCTN6psi-mi:“MI:0914”(association)0.530
PDGFDDCTN6psi-mi:“MI:0914”(association)0.530
TIGD5P4HA2psi-mi:“MI:0914”(association)0.530
GREM2ZZEF1psi-mi:“MI:0914”(association)0.530
EMILIN3ZZEF1psi-mi:“MI:0914”(association)0.530
PRICKLE3SIAH2psi-mi:“MI:0914”(association)0.530
CBFA2T3CBFA2T2psi-mi:“MI:0914”(association)0.530
BMP1TLL1psi-mi:“MI:0914”(association)0.530
PRG3ZNF324psi-mi:“MI:0914”(association)0.530

BioGRID (235): MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), RANBP9 (Co-fractionation), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS), MAEA (Affinity Capture-MS)

ESM2 similar proteins: A0A2R8QFQ6, A0A2R8RWN9, A0JN27, D3Z7P3, F1LTR1, O15294, O60907, O89050, O94925, P13264, P56558, P81436, Q07G17, Q13042, Q13888, Q15303, Q27HV0, Q28D01, Q2TBV5, Q3ULA2, Q4R8H1, Q4R9A8, Q4VC33, Q5F398, Q5JUK3, Q5R532, Q5RB35, Q5RKJ1, Q5SP67, Q5SRY7, Q61527, Q62956, Q6GR10, Q6P1K8, Q7L5Y9, Q7RTP6, Q7SXR3, Q8C6G8, Q8CGY8, Q8CJ19

Diamond homologs: A1C9R2, A1CZJ5, A2R9P6, A4RK04, Q0CA25, Q0TYW1, Q1DTI6, Q2H991, Q3MHJ2, Q4R9A8, Q4VC33, Q4WTQ4, Q5AS80, Q5F398, Q5R532, Q5RKJ1, Q6GR10, Q7L5Y9, Q7S2X0, Q7SXR3, Q9M2V9, Q9URU9, Q6C435, Q32L52, E7FGY2, Q6PC55, Q9D7M1, Q9NWU2

SIGNOR signaling

1 interactions.

AEffectBMechanism
Ub:E2“up-regulates activity”MAEAubiquitination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 198 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Regulation of pyruvate metabolism1041.1×6e-12

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

57 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance42
Likely benign2
Benign2

Top pathogenic / likely-pathogenic (1)

Variant IDHGVSClassification
979468GRCh37/hg19 4p16.3-16.2(chr4:68345-5831521)x1Pathogenic

SpliceAI

2641 predictions. Top by Δscore:

VariantEffectΔscore
4:1311975:CCA:Cacceptor_loss1.0000
4:1311976:CA:Cacceptor_loss1.0000
4:1311977:A:AGacceptor_gain1.0000
4:1311977:A:ATacceptor_loss1.0000
4:1311977:AG:Aacceptor_gain1.0000
4:1311977:AGGT:Aacceptor_gain1.0000
4:1311978:G:Aacceptor_gain1.0000
4:1311978:G:GAacceptor_gain1.0000
4:1311978:GGT:Gacceptor_gain1.0000
4:1311978:GGTG:Gacceptor_gain1.0000
4:1311978:GGTGC:Gacceptor_gain1.0000
4:1312157:GGAAG:Gdonor_gain1.0000
4:1312158:G:GTdonor_gain1.0000
4:1312159:A:Tdonor_gain1.0000
4:1312159:AAGG:Adonor_loss1.0000
4:1312160:AGGT:Adonor_loss1.0000
4:1312162:G:GAdonor_loss1.0000
4:1312163:T:Adonor_loss1.0000
4:1315389:T:TAacceptor_gain1.0000
4:1315390:G:Aacceptor_gain1.0000
4:1315597:CGAGG:Cdonor_loss1.0000
4:1315599:AG:Adonor_loss1.0000
4:1315600:GG:Gdonor_loss1.0000
4:1315601:G:Adonor_loss1.0000
4:1315602:T:Gdonor_loss1.0000
4:1322379:A:Gacceptor_gain1.0000
4:1327622:CTCA:Cacceptor_loss1.0000
4:1327623:TCA:Tacceptor_loss1.0000
4:1327624:CAGA:Cacceptor_loss1.0000
4:1327625:A:AGacceptor_gain1.0000

AlphaMissense

2625 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
4:1311995:T:CL29P1.000
4:1312006:T:CF33L1.000
4:1312008:T:AF33L1.000
4:1312008:T:GF33L1.000
4:1312009:C:AR34S1.000
4:1312010:G:CR34P1.000
4:1312021:A:GK38E1.000
4:1312023:G:CK38N1.000
4:1312023:G:TK38N1.000
4:1312034:G:CR42P1.000
4:1315524:G:CR127P1.000
4:1315542:T:CL133P1.000
4:1315545:T:CL134P1.000
4:1315569:C:AA142D1.000
4:1322433:T:CL170P1.000
4:1322458:C:GC178W1.000
4:1322465:T:AW181R1.000
4:1322465:T:CW181R1.000
4:1322466:G:CW181S1.000
4:1322467:G:CW181C1.000
4:1322467:G:TW181C1.000
4:1322490:T:AL189H1.000
4:1322490:T:CL189P1.000
4:1327697:C:AA217D1.000
4:1336903:T:CF270L1.000
4:1336905:C:AF270L1.000
4:1336905:C:GF270L1.000
4:1336964:T:CL290P1.000
4:1336972:G:CG293R1.000
4:1336973:G:AG293D1.000

dbSNP variants (sampled 300 via entrez): RS1000006042 (4:1336412 G>A), RS1000019708 (4:1327408 C>G,T), RS1000047985 (4:1312418 G>C,T), RS1000099982 (4:1312642 C>A,T), RS1000137395 (4:1303945 T>C,G), RS1000158158 (4:1331451 G>A), RS1000176598 (4:1293019 G>A,T), RS1000259395 (4:1325145 G>A), RS1000314311 (4:1318608 G>A), RS1000324120 (4:1318749 TC>T), RS1000342117 (4:1296462 C>A,G,T), RS1000430723 (4:1320758 C>A,G,T), RS1000482993 (4:1320614 C>T), RS1000523562 (4:1332193 A>C), RS1000653906 (4:1287932 T>C)

Disease associations

OMIM: gene MIM:606801 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

10 associations (top):

StudyTraitp-value
GCST001351_1Type 2 diabetes2.000000e-20
GCST001762_858Obesity-related traits2.000000e-06
GCST002128_3Type 2 diabetes2.000000e-07
GCST003400_35Type 2 diabetes1.000000e-12
GCST004894_48Type 2 diabetes1.000000e-08
GCST006626_39Pulse pressure1.000000e-10
GCST007847_14Type 2 diabetes1.000000e-24
GCST007847_87Type 2 diabetes7.000000e-10
GCST009379_153Type 2 diabetes9.000000e-18
GCST010118_34Type 2 diabetes3.000000e-16

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0005763pulse pressure measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

25 total (human), top 25 by PubMed support.

ChemicalActions (top 5)PubMed papers
Air Pollutantsincreases abundance, decreases expression, affects expression2
Arsenicaffects methylation, decreases expression, increases abundance2
Valproic Acidincreases expression, affects expression2
Particulate Matterdecreases expression, increases abundance, increases expression2
aristolochic acid Iincreases expression1
TAK-243increases sumoylation1
triphenyl phosphateaffects expression1
bisphenol Adecreases methylation1
methylselenic aciddecreases expression1
kojic acidincreases expression1
sodium arsenitedecreases expression, increases abundance1
ferrous chloridedecreases expression1
7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-onedecreases expression1
Resveratrolaffects cotreatment, increases expression1
Asbestosaffects expression1
Atrazinedecreases expression1
Benzo(a)pyreneincreases methylation1
Diuronaffects expression1
Doxorubicindecreases expression1
Ozoneaffects expression, increases abundance1
Plant Extractsaffects cotreatment, increases expression1
Smokedecreases expression1
Aflatoxin B1increases methylation1
Cadmium Chlorideincreases expression1
Lactic Aciddecreases expression1

Cellosaurus cell lines

6 cell lines: 6 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1NLAbcam K-562 MAEA KOCancer cell lineFemale
CVCL_D2K7Abcam Raji MAEA KOCancer cell lineMale
CVCL_D8PLUbigene HCT 116 MAEA KOCancer cell lineMale
CVCL_E2BRHAP1 MAEA (-) 1Cancer cell lineMale
CVCL_E2BSHAP1 MAEA (-) 2Cancer cell lineMale
CVCL_UQ88Abcam Jurkat MAEA KOCancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.