MAGEA3-DT

Summary

MAGEA3-DT (MAGEA3 divergent transcript, HGNC:56247) is a long non-coding RNA gene on chromosome Xq28.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56247
Approved symbol	MAGEA3-DT
Name	MAGEA3 divergent transcript
Location	Xq28
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000287394
Ensembl biotype	lncRNA
Entrez	105373370
RNAcentral	URS0000EF20C2 — lncRNA, 674 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000671457

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000671457 — 5 exons

Exon	Start	End
ENSE00003860052	152635882	152635987
ENSE00003875461	152639660	152639794
ENSE00003881897	152574677	152574980
ENSE00003883848	152698631	152698700
ENSE00003888530	152697595	152697653

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 81.19.

Top tissues by expression

36 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.19	silver quality
monocyte	CL:0000576	56.50	gold quality
cortex of kidney	UBERON:0001225	55.65	gold quality
adrenal gland	UBERON:0002369	51.17	gold quality
placenta	UBERON:0001987	49.16	gold quality
spleen	UBERON:0002106	47.92	gold quality
subcutaneous adipose tissue	UBERON:0002190	47.56	silver quality
blood	UBERON:0000178	47.18	silver quality
gastrocnemius	UBERON:0001388	46.15	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.82	silver quality
adipose tissue	UBERON:0001013	45.76	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	45.17	gold quality
testis	UBERON:0000473	43.22	gold quality
left testis	UBERON:0004533	43.07	gold quality
multicellular organism	UBERON:0000468	42.99	gold quality
esophagus mucosa	UBERON:0002469	42.42	silver quality
tibial nerve	UBERON:0001323	42.29	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	42.16	silver quality
body of pancreas	UBERON:0001150	40.96	silver quality
right testis	UBERON:0004534	40.82	gold quality
endometrium	UBERON:0001295	40.61	silver quality
tibial artery	UBERON:0007610	40.54	silver quality
heart left ventricle	UBERON:0002084	40.29	silver quality
skin of leg	UBERON:0001511	40.08	silver quality
transverse colon	UBERON:0001157	40.04	silver quality
putamen	UBERON:0001874	39.60	silver quality
hypothalamus	UBERON:0001898	38.85	silver quality
omental fat pad	UBERON:0010414	38.68	silver quality
thyroid gland	UBERON:0002046	38.33	silver quality
body of stomach	UBERON:0001161	37.78	silver quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.