MAGI1-IT1

Summary

MAGI1-IT1 (MAGI1 intronic transcript 1, HGNC:42436) is a long non-coding RNA gene on chromosome 3p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42436
Approved symbol	MAGI1-IT1
Name	MAGI1 intronic transcript 1
Location	3p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272610
Ensembl biotype	lncRNA
Entrez	151877
RNAcentral	URS0000ABD842 — lncRNA, 2585 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000460754

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000460754 — 3 exons

Exon	Start	End
ENSE00001849274	65954440	65954558
ENSE00001880818	65872815	65875050
ENSE00003710802	65902597	65902808

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 73.42.

Top tissues by expression

217 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.42	gold quality
bone marrow cell	CL:0002092	73.39	silver quality
colonic epithelium	UBERON:0000397	72.57	gold quality
tendon of biceps brachii	UBERON:0008188	71.86	silver quality
buccal mucosa cell	CL:0002336	71.14	gold quality
tendon	UBERON:0000043	60.91	silver quality
skin of abdomen	UBERON:0001416	59.65	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.22	gold quality
skin of leg	UBERON:0001511	56.97	gold quality
tonsil	UBERON:0002372	56.77	gold quality
oviduct epithelium	UBERON:0004804	56.51	silver quality
zone of skin	UBERON:0000014	56.20	gold quality
calcaneal tendon	UBERON:0003701	56.18	gold quality
adrenal tissue	UBERON:0018303	54.85	gold quality
upper leg skin	UBERON:0004262	54.39	silver quality
liver	UBERON:0002107	53.45	gold quality
right lobe of liver	UBERON:0001114	53.42	gold quality
medial globus pallidus	UBERON:0002477	52.84	gold quality
stromal cell of endometrium	CL:0002255	52.12	silver quality
lower esophagus mucosa	UBERON:0035834	52.06	gold quality
right uterine tube	UBERON:0001302	51.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.52	gold quality
esophagus mucosa	UBERON:0002469	50.56	gold quality
monocyte	CL:0000576	50.22	silver quality
corpus callosum	UBERON:0002336	50.10	silver quality
globus pallidus	UBERON:0001875	50.07	gold quality
islet of Langerhans	UBERON:0000006	49.78	gold quality
vagina	UBERON:0000996	49.78	gold quality
prostate gland	UBERON:0002367	49.67	gold quality
apex of heart	UBERON:0002098	49.65	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.