MAML2

gene
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Also known as KIAA1819MAM3

Summary

MAML2 (mastermind like transcriptional coactivator 2, HGNC:16259) is a protein-coding gene on chromosome 11q21, encoding Mastermind-like protein 2 (Q8IZL2). Acts as a transcriptional coactivator for NOTCH proteins.

The protein encoded by this gene is a member of the Mastermind-like family of proteins. All family members are proline and glutamine-rich, and contain a conserved basic domain that binds the ankyrin repeat domain of the intracellular domain of the Notch receptors (ICN1-4) in their N-terminus, and a transcriptional activation domain in their C-terminus. This protein binds to an extended groove that is formed by the interaction of CBF1, Suppressor of Hairless, LAG-1 (CSL) with ICN, and positively regulates Notch signaling. High levels of expression of this gene have been observed in several B cell-derived lymphomas. Translocations resulting in fusion proteins with both CRTC1 and CRTC3 have been implicated in the development of mucoepidermoid carcinomas, while a translocation event with CXCR4 has been linked with chronic lymphocytic leukemia (CLL). Copy number variation in the polyglutamine tract has been observed.

Source: NCBI Gene 84441 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): congenital heart disease (No Known Disease Relationship, ClinGen)
  • GWAS associations: 16
  • Clinical variants (ClinVar): 154 total
  • Cancer driver (intOGen): ambiguous (mixed evidence) across 3 cancer types
  • MANE Select transcript: NM_032427

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:16259
Approved symbolMAML2
Namemastermind like transcriptional coactivator 2
Location11q21
Locus typegene with protein product
StatusApproved
AliasesKIAA1819, MAM3
Ensembl geneENSG00000184384
Ensembl biotypeprotein_coding
OMIM607537
Entrez84441

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 protein_coding

ENST00000524717

RefSeq mRNA: 1 — MANE Select: NM_032427 NM_032427

CCDS: CCDS44714

Canonical transcript exons

ENST00000524717 — 5 exons

ExonStartEnd
ENSE000012904659599152095991723
ENSE000013122739598553195985642
ENSE000017713439609189296093517
ENSE000021419769634138396343195
ENSE000021611309597659895979963

Expression profiles

Bgee: expression breadth ubiquitous, 238 present calls, max score 94.01.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 29.2924 / max 615.6560, expressed in 1706 samples.

FANTOM5 promoters (11 alternative TSS)

Promoter IDTPM avgSamples expressed
12191621.79681683
1219083.3579870
1219171.0339370
1219120.7182390
1219130.6899302
1219150.4128191
1219100.3285147
1219070.3277144
1219090.2752132
1219140.202287

Top tissues by expression

248 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
mucosa of paranasal sinusUBERON:000503094.01gold quality
cartilage tissueUBERON:000241893.93gold quality
mammary ductUBERON:000176593.73gold quality
epithelium of mammary glandUBERON:000324493.63gold quality
skin of hipUBERON:000155491.94gold quality
parietal pleuraUBERON:000240091.30gold quality
bronchial epithelial cellCL:000232891.02gold quality
bronchusUBERON:000218590.56gold quality
visceral pleuraUBERON:000240190.39gold quality
mammary glandUBERON:000191190.29gold quality
thoracic mammary glandUBERON:000520090.25gold quality
renal medullaUBERON:000036289.67gold quality
kidney epitheliumUBERON:000481989.54gold quality
ileal mucosaUBERON:000033189.07gold quality
layer of synovial tissueUBERON:000761689.06gold quality
upper leg skinUBERON:000426288.98gold quality
epithelial cell of pancreasCL:000008388.91silver quality
oviduct epitheliumUBERON:000480488.84gold quality
tibiaUBERON:000097988.48gold quality
deciduaUBERON:000245088.42gold quality
epithelium of nasopharynxUBERON:000195187.74gold quality
cerebellar vermisUBERON:000472087.62gold quality
superficial temporal arteryUBERON:000161487.49gold quality
lower lobe of lungUBERON:000894986.92gold quality
synovial jointUBERON:000221786.40gold quality
pigmented layer of retinaUBERON:000178286.36gold quality
placentaUBERON:000198786.15gold quality
pancreatic ductal cellCL:000207985.88gold quality
stromal cell of endometriumCL:000225585.42gold quality
upper arm skinUBERON:000426385.32silver quality

Single-cell (SCXA)

Detected in 6 experiment(s), a significant marker in 4.

ExperimentMarker?Max mean expression
E-HCAD-35yes72.52
E-CURD-119yes66.72
E-HCAD-25yes25.08
E-ANND-3yes8.28
E-MTAB-11011no556.45
E-MTAB-7249no161.70

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

2 targets.

TargetRegulation
HES1Activation
NOTCH1Activation

miRNA regulators (miRDB)

107 targeting MAML2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-3924100.0072.092394
HSA-MIR-4747-5P100.0067.902681
HSA-MIR-5196-5P100.0067.982761
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-186-5P99.9970.833707
HSA-MIR-453199.9969.703181
HSA-MIR-56899.9869.862084
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-3065-5P99.9771.563281
HSA-MIR-4725-3P99.9669.532520
HSA-MIR-6780B-5P99.9669.602562
HSA-MIR-493-5P99.9672.472382
HSA-MIR-23A-3P99.9574.243163
HSA-MIR-23B-3P99.9574.243163
HSA-MIR-23C99.9573.923192
HSA-MIR-6755-5P99.9565.59464
HSA-MIR-1-3P99.9372.351914
HSA-MIR-20699.9372.501893
HSA-MIR-205-3P99.9269.923165
HSA-MIR-368699.9070.532432
HSA-MIR-3529-3P99.9073.553045
HSA-MIR-153-5P99.8973.866317
HSA-MIR-427199.8868.322244
HSA-MIR-30A-3P99.8769.742928
HSA-MIR-30D-3P99.8769.922917
HSA-MIR-30E-3P99.8769.682942
HSA-MIR-450399.8571.451869
HSA-MIR-469899.8471.414303

Literature-anchored findings (GeneRIF, showing 40)

  • Identification of new human proteins defines a family that consists of positive regulators for notch signaling (PMID:12386158)
  • cloning and functional analyses of the t(11;19) fusion oncogene t(11;19)(q21;p13) translocation in mucoepidermoid carcinoma creates a novel fusion product that disrupts a Notch signaling pathway. (PMID:12539049)
  • cloning of a novel fusion gene in mucoepidermoid carcinomas & benign Warthin’s tumors; the fusion, which results from a translocation, creates a chimeric gene in which exon 1 of a novel gene designated WAMTP1 is linked to exons 2-5 of MAML2 [WAMPT1] (PMID:14720503)
  • The MECT1-MAML2 fusion transcript may be specific to mucoepidermoid carcinoma and associated with a distinct mucoepidermoid carcinoma subset that exhibits favorable clinicopathologic features and an indolent clinical course. (PMID:16818685)
  • The present and previous observations indicate that the CRTC1-MAML2 fusion is etiologically linked to benign and low-grade malignant tumors originating from diverse exocrine glands rather than being linked to a separate tumor entity. (PMID:17334997)
  • CRTC1/MAML2 transcript may be detected in both low and high grade mucoepidermoid carcinoma (MEC), that fusion negative tumors may define a subset of biologically aggressive MEC’s tumors (PMID:17437281)
  • MAML2 involving a chimeric gene might contribute to carcinogenesis in multiple neoplasms by the disruption of NOTCH signaling. (PMID:17551948)
  • study reports for the first time a CRTC3-MAML2 fusion gene in a mucoepidermoid carcinoma, as determined by RT-PCR and sequencing. (PMID:18050304)
  • The presence of the t(11;19)(q21;p13) rearrangement favors a diagnosis of mucoepidermoid carcinoma. (PMID:18206539)
  • MAML2 and MECT1 fusion product can be detected by fluorescence in situ hybridization and reverse transcriptase polymerase chain reaction analysis performed on low- and high-grade primary bronchopulmonary mucoepidermoid carcinoma (PMID:19269006)
  • Mucoepidermoid carcinomas are often characterized by the fusion gene CRTC1-MAML2. The mean expression level of an embryonic stem cell marker, HMGA2 was studied and found to be higher in fusion negative than in positive tumors. (PMID:19521953)
  • CRTC1-MAML2 fusion was associated with favorable clinicopathologic tumor features and was useful in predicting the overall survival of patients with salivary gland mucoepidermoid carcinoma (PMID:19531414)
  • Mucoepidermoid carcinomas possessing CRTC3-MAML2 fusion may be associated with favorable clinicopathological features and patients may be younger than those with CRTC1-MAML2 fusion or those with no detectable gene fusion. (PMID:19749740)
  • MECT1/MAML2 translocation status may be important prognostically in salivary mucoepidermoid carcinomas, but it does not seem to override traditional clinicopathologic parameters. (PMID:20588178)
  • We report an example of intraosseous mucoepidermoid carcinoma with positive TORC1/MAML2 gene fusion transcript and discuss the clinical implications. (PMID:20625861)
  • The t(11;19) translocation and its CRTC1/MAML1 fusion transcript have been identified in mucoepidermoid carcinomas at different sites and are believed to be associated with the development of a subset of these tumors. (PMID:21074686)
  • in line with the essential role of MAML proteins for assembly and activity of the NOTCH transcriptional complex (NTC), we show that MAML-derived small-peptide constructs block NOTCH activity and disrupt NTC formation in vitro (PMID:21119597)
  • mucoepidermoid carcinoma of the salivary glands positive for CRTC1-MAML2 or CRTC3-MAML2 fusion formed a favourable tumour subset that was distinct from fusion-negative cases (PMID:21668476)
  • The presence of MAML2 rearrangement can be used as supportive evidence to distinguish oncocytic mucoepidermoid carcinoma from other oncocytic lesions. (PMID:21777943)
  • presence of small subpopulation of cells carrying MAML2 rearrangement in areas of squamous metaplasia in WT could predispose lesions to malignant transformation in mucoepidermoid carcinoma and could represent molecular link between the 2 entities. (PMID:22582766)
  • The lack of significant correlation with histologic grade or pathologic stage implies that the previously reported prognostic value of the MAML2 translocation may be an artifact of misclassification of MEC as other tumors. (PMID:22833306)
  • The presence of the MAML2 gene split defines a distinct mucoepidermoid carcinoma subset that is associated clinicopathologically with favorable tumor features. (PMID:23035786)
  • high-grade salivary mucoepidermoid carcinoma comprises a heterogeneous group of tumours in terms of molecular pathogenesis, in particular MAML2 fusion status (PMID:23855785)
  • aberrantly activated AREG-EGFR signaling is required for CRTC1-MAML2-positive MEC cell growth and survival, suggesting that EGFR-targeted therapies will benefit patients with advanced, unresectable CRTC1-MAML2-positive MEC. (PMID:23975434)
  • Metaplastic Warthin tumor and metaplastic pleomorphic adenoma of salivary glands did not harbor CRTC1-MAML2 and CRTC3-MAML2 fusion transcripts, respectively, or MAML2 gene rearrangement. (PMID:24121173)
  • using FISH to identify MAML2 rearrangement is a valuable diagnostic tool in the evaluation of thymic malignancies, specifically, distinguishing mucoepidermoid carcinoma from squamous cell carcinoma and adenosquamous carcinoma. (PMID:24134933)
  • Lacrimal and salivary gland PAs and Ca-ex-PAs have similar genomic profiles and frequently overexpress the PLAG1 oncoprotein. Copy number gains involving 9p23-p22.3 (NFIB) and 22q12-qter (PDGFB) may be of importance for disease progression. (PMID:24468654)
  • The high sensitivity and specificity of MAML2 rearrangement for central mucoepidermoid carcinoma points to its utility as a diagnostic adjunct in separating mucinous cystic lesions of the gnathic bones. (PMID:24647913)
  • MAML2 rearrangement appears frequent in PMEC and specific with this tumor. Both the presence of MAML2 rearrangement and absence of FLT1 tend to confer a favorable clinical outcome. (PMID:24714697)
  • Translocation t(11;19)(q14-21;p12-13) in patients with Salivary mucoepidermoid carcinoma was reported , which results in fusion between exons 1 and 2 of MAML2 on chromosome 11q21.Fusion positive, MAML2 re-arrangements are present in 50-70 % of MECs. (PMID:24771140)
  • The rearrangement between MAML2 and CXCR4, created by a t(2;11)(q22.1;q21) translocation, results in a new fusion gene in which a portion of CXCR4 is linked to the MAML2 gene. (PMID:24855209)
  • Malignant mucoepidermoid salivary gland tumors can arise from a recurrent t (11, 19)(q21;p13.1) translocation that generates an unusual chimeric CRTC1/MAML2 oncoprotein. (PMID:25071166)
  • We identified MAML2 rearrangements in five of nine odontogenic cysts lined by mucus-secreting cells (PMID:25123064)
  • SNPs in Notch pathway genes may be predictors of cutaneous melanoma disease-specific survival. (PMID:25953768)
  • The molecular basis underlying CRTC1-MAML2 oncogenic functions were identified in mucoepidermoid carcinoma cells. (PMID:26503699)
  • Detection of the CRTC1/MAML2 fusion transcript provides useful information for MEC diagnosis but is not associated with differences in survival outcomes. (PMID:26796488)
  • MAML2 rearrangement is common and specific for MEC, which makes it a useful diagnostic tool. MAML2 rearrangement also predicts a favorable prognosis. (PMID:27068311)
  • This condensed chromatin structure is associated with binding of DNMT3B and decreased occupancy of OCT1 transcription factor at MAML2 enhancer, suggesting a role of DNMT3B in increasing methylation of MAML2 after stilbenoid treatment. (PMID:27207652)
  • revealing neither correlation between the cellular composition and CRTC1-MAML2 fusions nor presence of CRTC3-MAML2 fusions in cutaneous hidradenoma (PMID:27402217)
  • we demonstrated that MDM2 is frequently overexpressed in clear cell carcinomas, and that MDM2 overexpression is associated with poor prognosis. (PMID:27659536)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerioENSDARG00000112977
mus_musculusMaml2ENSMUSG00000031925
rattus_norvegicusMaml2ENSRNOG00000005879

Paralogs (2): MAML1 (ENSG00000161021), MAML3 (ENSG00000196782)

Protein

Protein identifiers

Mastermind-like protein 2Q8IZL2 (reviewed: Q8IZL2)

All UniProt accessions (1): Q8IZL2

UniProt curated annotations — full annotation on UniProt →

Function. Acts as a transcriptional coactivator for NOTCH proteins. Has been shown to amplify NOTCH-induced transcription of HES1. Potentiates activation by NOTCH3 and NOTCH4 more efficiently than MAML1 or MAML3.

Subunit / interactions. Interacts through its N-terminal region with the ankyrin repeat region of the Notch proteins NOTCH1, NOTCH2, NOTCH3 and NOTCH4. Forms a DNA-binding complex with Notch proteins and RBPSUH/RBP-J kappa.

Subcellular location. Nucleus speckle.

Tissue specificity. Widely expressed with high levels detected in placenta, salivary gland and skeletal muscle.

Disease relevance. A chromosomal aberration involving MAML2 is found in mucoepidermoid carcinomas, benign Warthin tumors and clear cell hidradenomas. Translocation t(11;19)(q21;p13) with CRTC1. The fusion protein consists of the N-terminus of CRTC1 joined to the C-terminus of MAML2. The reciprocal fusion protein consisting of the N-terminus of MAML2 joined to the C-terminus of CRTC1 has been detected in a small number of mucoepidermoid carcinomas.

Domain organisation. The C-terminal domain is required for transcriptional activation.

Similarity. Belongs to the mastermind family.

RefSeq proteins (1): NP_115803* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR019082Mastermind-like_NDomain
IPR046369MAML1-3Family
IPR046370MAML_N_sfHomologous_superfamily
IPR048452MAML2_TADDomain

Pfam: PF09596, PF20804

UniProt features (29 total): compositionally biased region 14, region of interest 8, sequence conflict 3, chain 1, site 1, modified residue 1, sequence variant 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q8IZL2-F146.210.04

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 171–172 (breakpoint for translocation to form the crtc1-maml2 and maml2-crtc1 fusion proteins)

Post-translational modifications (1): 175

Function

Pathways and Gene Ontology

Reactome pathways

31 pathways

IDPathway
R-HSA-1912408Pre-NOTCH Transcription and Translation
R-HSA-210744Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells
R-HSA-2122947NOTCH1 Intracellular Domain Regulates Transcription
R-HSA-2197563NOTCH2 intracellular domain regulates transcription
R-HSA-2644606Constitutive Signaling by NOTCH1 PEST Domain Mutants
R-HSA-2894862Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
R-HSA-350054Notch-HLH transcription pathway
R-HSA-8941856RUNX3 regulates NOTCH signaling
R-HSA-9013508NOTCH3 Intracellular Domain Regulates Transcription
R-HSA-9013695NOTCH4 Intracellular Domain Regulates Transcription
R-HSA-9793380Formation of paraxial mesoderm
R-HSA-9976102Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells)
R-HSA-1266738Developmental Biology
R-HSA-157118Signaling by NOTCH
R-HSA-162582Signal Transduction
R-HSA-1643685Disease
R-HSA-186712Regulation of beta-cell development
R-HSA-1912422Pre-NOTCH Expression and Processing
R-HSA-1980143Signaling by NOTCH1
R-HSA-1980145Signaling by NOTCH2
R-HSA-212436Generic Transcription Pathway
R-HSA-2644602Signaling by NOTCH1 PEST Domain Mutants in Cancer
R-HSA-2644603Signaling by NOTCH1 in Cancer
R-HSA-2894858Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer
R-HSA-5663202Diseases of signal transduction by growth factor receptors and second messengers
R-HSA-73857RNA Polymerase II Transcription
R-HSA-74160Gene expression (Transcription)
R-HSA-8878159Transcriptional regulation by RUNX3
R-HSA-9012852Signaling by NOTCH3
R-HSA-9013694Signaling by NOTCH4

MSigDB gene sets: 193 (showing top): CREL_01, REACTOME_SIGNALING_BY_NOTCH, NFKB_Q6, NFKB_C, MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_23, GGGNNTTTCC_NFKB_Q6_01, IRF_Q6, CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN, OSMAN_BLADDER_CANCER_DN, TGGAAA_NFAT_Q4_01, PID_NOTCH_PATHWAY, GOCC_NUCLEAR_SPECK, GOCC_NUCLEAR_BODY, GOCC_RIBONUCLEOPROTEIN_GRANULE, REACTOME_REGULATION_OF_BETA_CELL_DEVELOPMENT

GO Biological Process (3): Notch signaling pathway (GO:0007219), positive regulation of transcription of Notch receptor target (GO:0007221), positive regulation of transcription by RNA polymerase II (GO:0045944)

GO Molecular Function (2): transcription coactivator activity (GO:0003713), protein binding (GO:0005515)

GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), nuclear speck (GO:0016607)

Reactome top-level categories

Rollup of top-15 pathways:

CategoryPathways
Signaling by NOTCH3
Pre-NOTCH Expression and Processing1
Regulation of beta-cell development1
Signaling by NOTCH11
Signaling by NOTCH21
Signaling by NOTCH1 PEST Domain Mutants in Cancer1
Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer1
Generic Transcription Pathway1
Transcriptional regulation by RUNX31
Signaling by NOTCH31
Signaling by NOTCH41
Gastrulation1
Differentiation of T cells1
Signal Transduction1
Developmental Biology1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
positive regulation of DNA-templated transcription2
cell surface receptor signaling pathway1
Notch signaling pathway1
positive regulation of transcription by RNA polymerase II1
regulation of transcription by RNA polymerase II1
transcription by RNA polymerase II1
transcription coregulator activity1
binding1
intracellular membrane-bounded organelle1
nuclear lumen1
cellular anatomical structure1
nuclear ribonucleoprotein granule1

Protein interactions and networks

STRING

1164 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MAML2RBPJQ06330999
MAML2NOTCH1P46531995
MAML2NOTCH4Q99466859
MAML2GNLYP09325833
MAML2JAG1P78504792
MAML2NOTCH3Q9UM47787
MAML2CRTC1Q6UUV9784
MAML2ANK1P16157760
MAML2ANK3Q12955741
MAML2ANK2Q01484741
MAML2JAG2Q9Y219734
MAML2DLL1O00548734
MAML2SRRTQ9BXP5697
MAML2DLL4Q9NR61686
MAML2EP300Q09472679

IntAct

8 interactions, top by confidence:

ABTypeScore
MAML2NOTCH1psi-mi:“MI:0915”(physical association)0.500
MAML2NOTCH1psi-mi:“MI:0914”(association)0.500
NEDD4MAML2psi-mi:“MI:0407”(direct interaction)0.440
MAML2NOTCH1psi-mi:“MI:0915”(physical association)0.370
MAML2DIABLOpsi-mi:“MI:0915”(physical association)0.370
MAML2MBpsi-mi:“MI:0914”(association)0.350
MAML2psi-mi:“MI:0915”(physical association)0.000

BioGRID (19): MAML2 (Affinity Capture-Western), MAML2 (Affinity Capture-Western), RBPJ (Affinity Capture-Western), MAML2 (Two-hybrid), MAML2 (Affinity Capture-RNA), MAML2 (Negative Genetic), MAML2 (Affinity Capture-MS), SYNC (Affinity Capture-MS), MB (Affinity Capture-MS), MAML1 (Affinity Capture-Western), MAML2 (Two-hybrid), MAML2 (Protein-peptide), MAML2 (Affinity Capture-MS), MAML2 (Proximity Label-MS), MAML2 (Proximity Label-MS)

ESM2 similar proteins: A0A3Q7JC00, A0JM64, A0JNC2, A2VE44, A4IHD9, B2C6R6, B5DE09, B8BCZ8, E7F1H9, F4JT98, O09000, O57539, P78364, Q0WVM7, Q15596, Q17BA4, Q2NLB0, Q3TCX3, Q5RDA3, Q5TP13, Q5ZL54, Q61026, Q64028, Q6GP15, Q6K271, Q6NS15, Q6PEH8, Q71SY5, Q7XYY2, Q7ZVN7, Q80TM6, Q8C7E9, Q8CHY6, Q8HXM1, Q8IZL2, Q8VCB2, Q8W234, Q90WJ3, Q924H2, Q940A7

Diamond homologs: A5D7F6, Q13495, Q6T264, Q8IZL2, P0C6A2, Q92585, Q96JK9

SIGNOR signaling

6 interactions.

AEffectBMechanism
RBPJup-regulatesMAML2binding
MAML2“up-regulates quantity by expression”NOTCH“transcriptional regulation”
NOTCHup-regulatesMAML2binding
MAML2“up-regulates quantity by expression”NOTCH1“transcriptional regulation”
MAML2“up-regulates quantity by expression”HES1“transcriptional regulation”
NOTCH4up-regulatesMAML2binding

Disease & clinical

Cancer significance

From intOGen — cancer-driver classification: ambiguous (mixed evidence) across 3 cancer types — AML, LUSC, VULVA.

Clinical variants and AI predictions

ClinVar

154 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance134
Likely benign7
Benign3

Top pathogenic / likely-pathogenic (0)

SpliceAI

3977 predictions. Top by Δscore:

VariantEffectΔscore
11:95985644:T:Cacceptor_gain1.0000
11:95991721:ATCC:Aacceptor_loss1.0000
11:95991722:TC:Tacceptor_gain1.0000
11:95991722:TCC:Tacceptor_loss1.0000
11:95991723:CC:Cacceptor_gain1.0000
11:95991724:C:CCacceptor_gain1.0000
11:95991725:T:Gacceptor_loss1.0000
11:96136317:A:Cacceptor_gain1.0000
11:95985524:CACTT:Cdonor_loss0.9900
11:95985525:ACTT:Adonor_loss0.9900
11:95985526:CTTA:Cdonor_loss0.9900
11:95985527:TTA:Tdonor_loss0.9900
11:95985528:TAC:Tdonor_loss0.9900
11:95985529:A:ACdonor_gain0.9900
11:95985530:C:Adonor_loss0.9900
11:95985530:C:CCdonor_gain0.9900
11:95985642:CCT:Cacceptor_gain0.9900
11:95985643:C:CCacceptor_gain0.9900
11:95985644:T:TCacceptor_gain0.9900
11:95985656:A:Cacceptor_gain0.9900
11:95991719:TGATC:Tacceptor_gain0.9900
11:95991724:C:Tacceptor_gain0.9900
11:95993618:C:CTdonor_gain0.9900
11:96057646:T:Adonor_gain0.9900
11:96095483:C:CAdonor_gain0.9900
11:96136309:A:Cacceptor_gain0.9900
11:96136315:A:Cacceptor_gain0.9900
11:96136317:A:ACacceptor_gain0.9900
11:96136326:A:Cacceptor_gain0.9900
11:96177072:A:Cacceptor_gain0.9900

AlphaMissense

7629 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:95978993:C:AW1142C1.000
11:95978993:C:GW1142C1.000
11:95978995:A:GW1142R1.000
11:95978995:A:TW1142R1.000
11:96092724:A:GL436P1.000
11:96092724:A:TL436H1.000
11:96093093:A:GL313P1.000
11:96093105:A:GL309P1.000
11:96093114:A:GL306P1.000
11:96341669:A:GL76P1.000
11:96341745:G:CH51D1.000
11:96341753:C:GR48P1.000
11:96341757:A:GC47R1.000
11:96341765:A:CI44S1.000
11:96341765:A:TI44N1.000
11:96341768:C:GR43P1.000
11:96341774:C:GR41P1.000
11:96341777:A:GL40P1.000
11:96341777:A:TL40H1.000
11:95978967:A:CI1151S0.999
11:95978967:A:GI1151T0.999
11:95978976:A:GL1148P0.999
11:95978976:A:TL1148H0.999
11:95978991:A:GM1143T0.999
11:95978994:C:GW1142S0.999
11:95979021:A:GL1133S0.999
11:95979024:A:GL1132S0.999
11:96093054:A:GL326P0.999
11:96093093:A:TL313Q0.999
11:96093102:A:GF310S0.999

dbSNP variants (sampled 300 via entrez): RS1000004929 (11:96217132 A>G), RS1000018005 (11:96333118 T>A), RS1000028235 (11:96341989 G>A), RS1000036091 (11:96297330 T>A,C), RS1000036314 (11:96072732 T>A,C), RS1000044039 (11:95990863 A>G), RS1000052535 (11:96004725 T>C), RS1000058152 (11:96114252 C>G), RS1000072801 (11:96162760 T>C), RS1000082556 (11:96169314 G>A), RS1000090772 (11:96299698 T>C), RS1000091425 (11:96268747 T>C), RS1000100884 (11:96051241 A>G), RS1000109034 (11:96247581 C>T), RS1000135476 (11:96004474 C>A)

Disease associations

OMIM: gene MIM:607537 | disease phenotypes:

GenCC curated gene-disease

DiseaseClassificationInheritance
congenital heart diseaseNo Known Disease RelationshipUnknown

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
congenital heart diseaseNo Known Disease RelationshipUD

Mondo (1): congenital heart disease (MONDO:0005453)

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

16 associations (top):

StudyTraitp-value
GCST000323_10Response to treatment for acute lymphoblastic leukemia8.000000e-06
GCST001728_12Ulcerative colitis1.000000e-08
GCST001819_8Corneal astigmatism2.000000e-06
GCST001885_5Height8.000000e-09
GCST002566_13Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)6.000000e-06
GCST003126_5Influenza A (H1N1) severity6.000000e-07
GCST003226_5Pelvic organ prolapse1.000000e-06
GCST004133_30Ulcerative colitis7.000000e-07
GCST004136_24Methadone dose in opioid dependence6.000000e-06
GCST004348_18Non-glioblastoma glioma4.000000e-10
GCST004579_2Waist-to-hip circumference ratio (alcohol intake interaction)2.000000e-06
GCST008595_103Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)8.000000e-09
GCST009677_3Keratoconus1.000000e-07
GCST012490_499Femur bone mineral density x serum urate levels interaction3.000000e-08
GCST90002383_41Hematocrit2.000000e-09
GCST90002384_296Hemoglobin8.000000e-10

EFO canonical traits (9, from GWAS)

EFO IDTrait name
EFO:0005944cumulative dose response to bevacizumab
EFO:0007743influenza A severity measurement
EFO:0007907methadone dose measurement
EFO:0004343waist-hip ratio
EFO:0004337intelligence
EFO:0004784self reported educational attainment
EFO:0004531urate measurement
EFO:0004348hematocrit
EFO:0004509hemoglobin measurement

MeSH disease descriptors (1)

DescriptorNameTree numbers
D006330Heart Defects, CongenitalC14.240.400; C14.280.400; C16.131.240.400

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

51 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneincreases methylation, decreases expression, decreases methylation4
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxideaffects expression, decreases expression3
trichostatin Aaffects cotreatment, increases expression2
sodium arsenitedecreases expression, affects cotreatment, increases abundance2
entinostatdecreases expression, affects cotreatment2
(+)-JQ1 compounddecreases expression2
Arsenicaffects methylation, affects cotreatment, decreases expression, increases abundance2
Cisplatinaffects cotreatment, decreases expression2
Estradiolaffects cotreatment, increases expression, decreases expression2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Tetrachlorodibenzodioxindecreases expression2
Valproic Aciddecreases expression, increases expression2
aristolochic acid Idecreases expression1
TAK-243increases sumoylation1
methylmercuric chloridedecreases expression1
pirinixic acidaffects binding, increases activity, increases expression1
bisphenol Aaffects methylation1
2-methyl-4-isothiazolin-3-onedecreases expression1
tris(2-butoxyethyl) phosphateaffects expression1
beta-lapachonedecreases expression1
cobaltous chloridedecreases expression1
manganese chlorideaffects cotreatment, decreases expression, increases abundance1
potassium chromate(VI)affects cotreatment, decreases expression1
epigallocatechin gallateaffects cotreatment, decreases expression1
di-n-butylphosphoric acidaffects expression1
perfluorooctane sulfonic aciddecreases expression1
monomethylarsonous aciddecreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression, increases expression1
abrineincreases expression1
dorsomorphinincreases expression, affects cotreatment, decreases expression1

Cellosaurus cell lines

16 cell lines: 15 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_0455NCI-H292Cancer cell lineFemale
CVCL_A464NCI-H3118Cancer cell lineFemale
CVCL_B409Hut292DMCancer cell lineFemale
CVCL_B7H4HCM-MEC010Cancer cell lineFemale
CVCL_D7FFNCI-H292-LucCancer cell lineFemale
CVCL_D7U2Ubigene A-549 MAML2 KOCancer cell lineMale
CVCL_D8PRUbigene HCT 116 MAML2 KOCancer cell lineMale
CVCL_D9J2Ubigene HEK293 MAML2 KOTransformed cell lineFemale
CVCL_E0GZUbigene HeLa MAML2 KOCancer cell lineFemale
CVCL_E0ZTUbigene NCI-H292 EPCAM KOCancer cell lineFemale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00668824PHASE4UNKNOWNImproved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist
NCT01368705PHASE4COMPLETEDNitrogen Balance in Infants After Post Cardiothoracic Surgery
NCT01619982PHASE4COMPLETEDPre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients
NCT02122679PHASE4WITHDRAWNTranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass
NCT02527811PHASE4UNKNOWNUlinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery
NCT03014700PHASE4COMPLETEDFibrinogen Concentrate vs Cryoprecipitate
NCT03408340PHASE4TERMINATEDParavertebral Nerve Blocks in Neonates
NCT03630796PHASE4UNKNOWNEffect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery
NCT03667703PHASE4COMPLETEDStress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease
NCT04453761PHASE4UNKNOWNThiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass
NCT06668389PHASE4RECRUITINGSodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial
NCT07499154PHASE4NOT_YET_RECRUITINGPerioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery
NCT00000470PHASE3COMPLETEDInfant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest
NCT00000494PHASE3COMPLETEDManagement of Patent Ductus in Premature Infants
NCT01134302PHASE3UNKNOWNHybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation
NCT01607983PHASE3WITHDRAWNEffects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients
NCT01662011PHASE3UNKNOWNApplication of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery
NCT02320669PHASE3COMPLETEDPhase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass
NCT02615262PHASE3COMPLETEDIntraoperative Dexamethasone in Pediatric Cardiac Surgery
NCT03153137PHASE3COMPLETEDClinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects
NCT03154476PHASE3COMPLETEDRole of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study
NCT04536194PHASE3COMPLETEDDopamine Versus Norepinephrine Under General Anesthesia
NCT04702373PHASE3ACTIVE_NOT_RECRUITINGTraining in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT
NCT05049590PHASE3COMPLETEDAcute Normovolemic Hemodilution in Complex Cardiac Surgery
NCT06406517PHASE3UNKNOWNComparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics
NCT06693674PHASE3RECRUITINGEffect of Sacubitril-Valsartan on Cardiac Structure and Function
NCT06955260PHASE3NOT_YET_RECRUITINGSGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure
NCT00115375PHASE2COMPLETEDPlatelet Aggregation Inhibition in Children on Clopidogrel (PICOLO)
NCT00350220PHASE2COMPLETEDTransfusion Strategies in Pediatric Cardiothoracic Surgery
NCT00374088PHASE2COMPLETEDN-Acetylcysteine in Neonatal Congenital Heart Surgery (INACT Study)
NCT00538785PHASE2COMPLETEDA Study to Evaluate MEDI-524 In Children With Hemodynamically Significant Congenital Heart Disease
NCT00770705PHASE2WITHDRAWNParenteral Phenoxybenzamine During Congenital Heart Disease Surgery
NCT00919945PHASE2TERMINATEDImpact of Early Enteral Feeding on Splanchnic Blood Flow After Surgery for Critical Heart Disease in the Newborn
NCT01063712PHASE2COMPLETEDSafety and Effectiveness of the Device Nit-Occlud® PDA-R
NCT01069510PHASE2COMPLETEDSpironolactone in Adult Congenital Heart Disease
NCT01189981PHASE2COMPLETEDEffect of eHealth Encouragements to Intensive Exercise in Adolescents With Congenital Heart Disease
NCT01330433PHASE2COMPLETEDEffects of CoSeal on Bleeding & Adhesions in Pediatric Heart Surgery
NCT01662037PHASE2COMPLETEDBosentan Therapy in Children With Functional Single Ventricle
NCT01668264PHASE2UNKNOWNImaging Assessment of Diastolic Function
NCT01827059PHASE2UNKNOWNBosentan In Exercise Induced Pulmonary Arterial Hypertension in CongenitaL Heart diseasE