MARCHF4
geneOn this page
Also known as KIAA1399MARCH-IVRNF174
Summary
MARCHF4 (membrane associated ring-CH-type finger 4, HGNC:29269) is a protein-coding gene on chromosome 2q35, encoding E3 ubiquitin-protein ligase MARCHF4 (Q9P2E8). E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I and CD4, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies.
MARCH4 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH enzymes add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH4 reduces surface accumulation of several membrane glycoproteins by directing them to the endosomal compartment (Bartee et al., 2004 [PubMed 14722266]).
Source: NCBI Gene 57574 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 62 total
- MANE Select transcript:
NM_020814
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29269 |
| Approved symbol | MARCHF4 |
| Name | membrane associated ring-CH-type finger 4 |
| Location | 2q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1399, MARCH-IV, RNF174 |
| Ensembl gene | ENSG00000144583 |
| Ensembl biotype | protein_coding |
| OMIM | 608208 |
| Entrez | 57574 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000273067
RefSeq mRNA: 1 — MANE Select: NM_020814
NM_020814
CCDS: CCDS33376
Canonical transcript exons
ENST00000273067 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001266267 | 216257865 | 216259679 |
| ENSE00001266277 | 216369745 | 216372483 |
| ENSE00001316970 | 216283574 | 216283729 |
| ENSE00001641317 | 216277672 | 216277864 |
Expression profiles
Bgee: expression breadth broad, 87 present calls, max score 95.86.
FANTOM5 (CAGE): breadth broad, TPM avg 4.2780 / max 134.6185, expressed in 826 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 33769 | 1.4372 | 582 |
| 33772 | 1.3130 | 560 |
| 33768 | 0.7518 | 378 |
| 33770 | 0.4474 | 116 |
| 33771 | 0.2182 | 105 |
| 33767 | 0.1104 | 40 |
Top tissues by expression
232 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 95.86 | gold quality |
| oocyte | CL:0000023 | 92.22 | gold quality |
| secondary oocyte | CL:0000655 | 88.45 | gold quality |
| ganglionic eminence | UBERON:0004023 | 81.81 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.97 | silver quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 80.00 | gold quality |
| entorhinal cortex | UBERON:0002728 | 79.75 | gold quality |
| prefrontal cortex | UBERON:0000451 | 77.25 | gold quality |
| islet of Langerhans | UBERON:0000006 | 77.13 | gold quality |
| stromal cell of endometrium | CL:0002255 | 77.06 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 76.91 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 76.82 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 75.40 | gold quality |
| postcentral gyrus | UBERON:0002581 | 75.18 | gold quality |
| frontal cortex | UBERON:0001870 | 75.16 | gold quality |
| neocortex | UBERON:0001950 | 74.61 | gold quality |
| nucleus accumbens | UBERON:0001882 | 74.16 | gold quality |
| cerebral cortex | UBERON:0000956 | 73.89 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 73.41 | gold quality |
| temporal lobe | UBERON:0001871 | 73.00 | gold quality |
| parietal lobe | UBERON:0001872 | 72.69 | silver quality |
| primary visual cortex | UBERON:0002436 | 72.53 | gold quality |
| right frontal lobe | UBERON:0002810 | 72.32 | gold quality |
| forebrain | UBERON:0001890 | 71.79 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 71.77 | gold quality |
| caudate nucleus | UBERON:0001873 | 71.43 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 70.49 | gold quality |
| pituitary gland | UBERON:0000007 | 70.47 | gold quality |
| putamen | UBERON:0001874 | 70.26 | gold quality |
| amygdala | UBERON:0001876 | 69.84 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.80 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
102 targeting MARCHF4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-23B-5P | 99.98 | 66.07 | 587 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-23A-5P | 99.94 | 65.39 | 468 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
Literature-anchored findings (GeneRIF, showing 1)
- Membrane-Associated RING-CH proteins MARCH VIII and MARCH IV associate with Bap31 and target CD81 and CD44 to lysosomes (PMID:21151997)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | marchf4a | ENSDARG00000055839 |
| danio_rerio | marchf4b | ENSDARG00000056439 |
| mus_musculus | Marchf4 | ENSMUSG00000039372 |
| rattus_norvegicus | Marchf4 | ENSRNOG00000016472 |
Paralogs (6): MARCHF2 (ENSG00000099785), MARCHF9 (ENSG00000139266), MARCHF1 (ENSG00000145416), MARCHF8 (ENSG00000165406), MARCHF3 (ENSG00000173926), MARCHF11 (ENSG00000183654)
Protein
Protein identifiers
E3 ubiquitin-protein ligase MARCHF4 — Q9P2E8 (reviewed: Q9P2E8)
Alternative names: Membrane-associated RING finger protein 4, Membrane-associated RING-CH protein IV, RING finger protein 174, RING-type E3 ubiquitin transferase MARCHF4
All UniProt accessions (1): Q9P2E8
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I and CD4, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.
Subcellular location. Golgi apparatus membrane.
Tissue specificity. Expressed in brain and placenta.
Domain organisation. The RING-CH-type zinc finger domain is required for E3 ligase activity.
Pathway. Protein modification; protein ubiquitination.
RefSeq proteins (1): NP_065865* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011016 | Znf_RING-CH | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR046356 | MARCHF4/9/11 | Family |
| IPR047905 | MARCHF4_RING_CH-C4HC3 | Domain |
Pfam: PF12906
UniProt features (20 total): binding site 8, compositionally biased region 4, region of interest 3, transmembrane region 2, signal peptide 1, chain 1, zinc finger region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9P2E8-F1 | 62.42 | 0.14 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 163; 166; 179; 181; 189; 192; 205; 208
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 89 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_DN, GOCC_TRANS_GOLGI_NETWORK, CORRE_MULTIPLE_MYELOMA_UP, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, TGTTTAC_MIR30A5P_MIR30C_MIR30D_MIR30B_MIR30E5P, SENESE_HDAC3_TARGETS_DN, GOCC_GOLGI_STACK, GOCC_ORGANELLE_SUBCOMPARTMENT, GOMF_ACYLTRANSFERASE_ACTIVITY, GOMF_AMINOACYLTRANSFERASE_ACTIVITY, GOMF_UBIQUITIN_LIKE_PROTEIN_LIGASE_ACTIVITY, DODD_NASOPHARYNGEAL_CARCINOMA_DN, MODULE_49, MEISSNER_NPC_HCP_WITH_H3K4ME2, MIKKELSEN_MEF_HCP_WITH_H3K27ME3
GO Biological Process (1): protein ubiquitination (GO:0016567)
GO Molecular Function (5): ubiquitin-protein transferase activity (GO:0004842), zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (5): Golgi membrane (GO:0000139), Golgi stack (GO:0005795), trans-Golgi network (GO:0005802), Golgi apparatus (GO:0005794), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| Golgi apparatus subcompartment | 2 |
| protein modification by small protein conjugation | 1 |
| ubiquitin-like protein transferase activity | 1 |
| transition metal ion binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| Golgi apparatus | 1 |
| bounding membrane of organelle | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
628 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MARCHF4 | UBE2H | P37286 | 681 |
| MARCHF4 | AP1M1 | Q9BXS5 | 670 |
| MARCHF4 | MARCHF10 | Q8NA82 | 582 |
| MARCHF4 | UBA1 | P22314 | 490 |
| MARCHF4 | MARCHF6 | O60337 | 474 |
| MARCHF4 | MARCHF7 | Q9H992 | 474 |
| MARCHF4 | LIN7C | Q9NUP9 | 474 |
| MARCHF4 | RNF139 | Q8WU17 | 464 |
| MARCHF4 | RNF5 | Q99942 | 435 |
| MARCHF4 | UBE2QL1 | A1L167 | 391 |
| MARCHF4 | UBE2E1 | P51965 | 388 |
| MARCHF4 | MARCHF5 | Q9NX47 | 379 |
| MARCHF4 | AMFR | P26442 | 374 |
| MARCHF4 | SYVN1 | Q86TM6 | 364 |
| MARCHF4 | RNF223 | E7ERA6 | 359 |
IntAct
120 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MARCHF4 | GORASP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PATJ | MARCHF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | SNX27 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | DLG1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | MAST2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | PDZD7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | DLG4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | LNX2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | DLG3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | DLG2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MAGI2 | MARCHF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | SNTB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | SNTA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | MAGI3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | GOPC | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | HTRA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | SNTG1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ARHGEF12 | MARCHF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | SYNJ2BP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | MAGI1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | TAX1BP3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | HTRA4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MARCHF4 | RADIL | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SCRIB | MARCHF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (113): HSPA5 (Affinity Capture-MS), BAG2 (Affinity Capture-MS), PON2 (Affinity Capture-MS), STUB1 (Affinity Capture-MS), DNAJB12 (Affinity Capture-MS), NCSTN (Affinity Capture-MS), GLA (Affinity Capture-MS), CLPTM1L (Affinity Capture-MS), SORT1 (Affinity Capture-MS), ZMPSTE24 (Affinity Capture-MS), ERLEC1 (Affinity Capture-MS), DNAJC16 (Affinity Capture-MS), SDF2L1 (Affinity Capture-MS), PREB (Affinity Capture-MS), TMEM33 (Affinity Capture-MS)
ESM2 similar proteins: A0A0U1RQ45, A0A1B0GWB2, A2A9T0, A6QPA0, A7MCY6, D3ZFB6, E9PUL5, E9Q0B3, F5GYI3, F5H4A9, J3QNX5, O70142, P0C1G7, P81408, P97764, P98077, Q148V8, Q15654, Q2KI80, Q3SX26, Q3SZL6, Q4V9L6, Q5FVJ4, Q5FW56, Q5RAC1, Q5T7N3, Q6DG50, Q6PAJ3, Q6PJ61, Q6ZMQ8, Q6ZNR0, Q6ZRV2, Q75VX8, Q7Z6L0, Q86UK7, Q86VE0, Q8BGW2, Q8BRJ3, Q8BX43, Q8C0R7
Diamond homologs: A0JN69, A6NNE9, A6P320, F4JKK0, O60103, O60337, P40318, P90489, P90495, Q0IH10, Q0P496, Q0VD59, Q1LVZ2, Q28EX7, Q32L65, Q3TZ87, Q5I0I2, Q5PQ35, Q5R9W1, Q5T0T0, Q5XIE5, Q5XIV2, Q68FA7, Q6NZQ8, Q6ZQ89, Q80TE3, Q86UD3, Q86YJ5, Q8BRX9, Q8CBH7, Q8TCQ1, Q99M02, Q9DBD2, Q9P0N8, Q9P2E8, Q0X0A5, Q28IK8, Q3KNM2, Q3ZC24, Q5R9W2
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | MARCHF4 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 74 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Assembly and cell surface presentation of NMDA receptors | 8 | 43.2× | 8e-10 |
| Neurexins and neuroligins | 9 | 37.7× | 3e-10 |
| Protein-protein interactions at synapses | 5 | 28.2× | 5e-05 |
| Signaling by Rho GTPases | 7 | 5.1× | 4e-03 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 7 | 5.0× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 9 | 72.6× | 1e-12 |
| protein localization to synapse | 5 | 53.2× | 2e-06 |
| receptor clustering | 6 | 52.0× | 2e-07 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 6 | 41.3× | 6e-07 |
| cell-cell adhesion | 8 | 11.3× | 3e-05 |
| protein-containing complex assembly | 6 | 9.5× | 1e-03 |
| protein localization to plasma membrane | 5 | 7.5× | 8e-03 |
| chemical synaptic transmission | 7 | 7.5× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
62 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 53 |
| Likely benign | 6 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1398 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:216259687:A:T | acceptor_gain | 1.0000 |
| 2:216259689:C:CT | acceptor_gain | 1.0000 |
| 2:216277702:T:TA | donor_gain | 1.0000 |
| 2:216277703:C:A | donor_gain | 1.0000 |
| 2:216277860:TGCCA:T | acceptor_gain | 1.0000 |
| 2:216277861:GCCA:G | acceptor_gain | 1.0000 |
| 2:216277862:CCA:C | acceptor_gain | 1.0000 |
| 2:216277862:CCAC:C | acceptor_gain | 1.0000 |
| 2:216277863:CA:C | acceptor_gain | 1.0000 |
| 2:216277863:CAC:C | acceptor_gain | 1.0000 |
| 2:216277864:AC:A | acceptor_loss | 1.0000 |
| 2:216277865:C:CC | acceptor_gain | 1.0000 |
| 2:216283569:TGTA:T | donor_loss | 1.0000 |
| 2:216283570:GTACC:G | donor_loss | 1.0000 |
| 2:216283572:A:T | donor_loss | 1.0000 |
| 2:216283573:C:CT | donor_loss | 1.0000 |
| 2:216283726:CCCC:C | acceptor_gain | 1.0000 |
| 2:216283727:CCC:C | acceptor_gain | 1.0000 |
| 2:216283727:CCCC:C | acceptor_gain | 1.0000 |
| 2:216283728:CC:C | acceptor_gain | 1.0000 |
| 2:216283728:CCC:C | acceptor_gain | 1.0000 |
| 2:216283729:CC:C | acceptor_gain | 1.0000 |
| 2:216283729:CCT:C | acceptor_loss | 1.0000 |
| 2:216283730:C:CA | acceptor_loss | 1.0000 |
| 2:216283730:C:CC | acceptor_gain | 1.0000 |
| 2:216283731:T:C | acceptor_loss | 1.0000 |
| 2:216259680:C:CG | acceptor_loss | 0.9900 |
| 2:216259681:T:C | acceptor_loss | 0.9900 |
| 2:216259686:C:CT | acceptor_gain | 0.9900 |
| 2:216259690:A:T | acceptor_gain | 0.9900 |
AlphaMissense
2658 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:216259609:C:A | W312C | 1.000 |
| 2:216259609:C:G | W312C | 1.000 |
| 2:216259611:A:G | W312R | 1.000 |
| 2:216259611:A:T | W312R | 1.000 |
| 2:216259632:A:G | W305R | 1.000 |
| 2:216259632:A:T | W305R | 1.000 |
| 2:216259676:A:G | L290P | 1.000 |
| 2:216277678:A:G | C287R | 1.000 |
| 2:216277688:C:A | M283I | 1.000 |
| 2:216277688:C:G | M283I | 1.000 |
| 2:216277688:C:T | M283I | 1.000 |
| 2:216277718:G:C | F273L | 1.000 |
| 2:216277718:G:T | F273L | 1.000 |
| 2:216277720:A:G | F273L | 1.000 |
| 2:216277777:A:G | W254R | 1.000 |
| 2:216277777:A:T | W254R | 1.000 |
| 2:216277784:A:C | S251R | 1.000 |
| 2:216277784:A:T | S251R | 1.000 |
| 2:216277786:T:G | S251R | 1.000 |
| 2:216277807:C:G | G244R | 1.000 |
| 2:216277836:T:A | E234V | 1.000 |
| 2:216277864:A:G | W225R | 1.000 |
| 2:216277864:A:T | W225R | 1.000 |
| 2:216283611:T:C | Y212C | 1.000 |
| 2:216283612:A:C | Y212D | 1.000 |
| 2:216283612:A:G | Y212H | 1.000 |
| 2:216283622:G:C | C208W | 1.000 |
| 2:216283623:C:A | C208F | 1.000 |
| 2:216283623:C:G | C208S | 1.000 |
| 2:216283623:C:T | C208Y | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000008380 (2:216333793 G>A), RS1000063618 (2:216335058 T>C), RS1000064920 (2:216323559 G>T), RS1000115392 (2:216283995 C>T), RS1000122748 (2:216289662 T>C), RS1000162782 (2:216332251 G>A), RS1000167039 (2:216268441 TC>T), RS1000180752 (2:216359219 G>A), RS1000224265 (2:216372777 A>G), RS1000240683 (2:216352460 T>G), RS1000292510 (2:216318538 G>A), RS1000296703 (2:216338827 C>T), RS1000305635 (2:216361107 T>C), RS1000328191 (2:216295982 C>T), RS1000468010 (2:216284268 C>T)
Disease associations
OMIM: gene MIM:608208 | disease phenotypes:
GenCC curated gene-disease
Mondo (2): primary ovarian failure (MONDO:0005387), frontotemporal dementia (MONDO:0017276)
Orphanet (2): Frontotemporal dementia (Orphanet:282), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001563_7 | Migraine | 1.000000e-06 |
| GCST010698_88 | Subcortical volume (min-P) | 1.000000e-18 |
| GCST010699_97 | Brain morphology (min-P) | 5.000000e-12 |
| GCST010700_52 | Cortical thickness (MOSTest) | 4.000000e-10 |
| GCST010701_122 | Cortical surface area (MOSTest) | 7.000000e-11 |
| GCST010702_157 | Subcortical volume (MOSTest) | 4.000000e-24 |
| GCST010703_234 | Brain morphology (MOSTest) | 2.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
| EFO:0004840 | cortical thickness |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D057180 | Frontotemporal Dementia | C10.228.140.380.266.299; C10.574.950.300.299; C18.452.845.800.300.299; F03.615.400.380.299 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, affects cotreatment | 3 |
| Air Pollutants | increases expression, increases abundance | 2 |
| Valproic Acid | increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| Esketamine | decreases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| pentanal | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| abrine | increases expression | 1 |
| ormosil | increases expression, affects binding | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| NVP-BKM120 | decreases expression, affects cotreatment | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Aldehydes | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
| Dust | increases abundance, increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
Clinical trials (associated diseases)
219 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT00376051 | PHASE4 | COMPLETED | Serotonergic Function and Behavioural and Psychological Symptoms of Frontotemporal Dementia |
| NCT00950430 | PHASE4 | ENROLLING_BY_INVITATION | Imaging of Brain Amyloid Plaques in the Aging Population |
| NCT06093126 | PHASE4 | RECRUITING | Lemborexant for Insomnia in a Patient With Dementia: An N-of-1 Trial |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT00594737 | PHASE3 | COMPLETED | Open Label Pilot Study of the Effects of Memantine on FDG-PET in Frontotemporal Dementia |
| NCT03682185 | PHASE3 | COMPLETED | The Healthy Patterns Sleep Study |
| NCT04374136 | PHASE3 | TERMINATED | A Phase 3 Study to Evaluate Efficacy and Safety of AL001 in Frontotemporal Dementia (INFRONT-3) |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT00416169 | PHASE2 | COMPLETED | A Pilot Study to Explore the Safety and Tolerability of Galantamine HBr in the Treatment of Pick Complex/Frontotemporal Dementia |
| NCT01890343 | PHASE2 | COMPLETED | Imaging Characteristics of Florbetapir 18F in Patients With Frontotemporal Dementia, Alzheimer’s Disease and Normal Controls. |
| NCT01937013 | PHASE2 | COMPLETED | Impact of Emotional Mimicry and Oxytocin on Frontotemporal Dementia |
| NCT02676843 | PHASE2 | COMPLETED | Tau PET Imaging With 18F-AV-1451 in Subjects With MAPT Mutations |
| NCT02862210 | PHASE2 | COMPLETED | Low-Dose Lithium for the Treatment of Behavioral Symptoms in Frontotemporal Dementia |
| NCT03260920 | PHASE2 | UNKNOWN | Intranasal Oxytocin for Frontotemporal Dementia |
| NCT03987295 | PHASE2 | COMPLETED | A Phase 2 Study to Evaluate Safety of Long-term AL001 Dosing in Frontotemporal Dementia (FTD) Patients (INFRONT-2) |
| NCT04220021 | PHASE2 | ACTIVE_NOT_RECRUITING | Safety and Therapeutic Potential of the FDA-approved Drug Metformin for C9orf72 ALS/FTD |
| NCT04489017 | PHASE2 | COMPLETED | Palmitoylethanolamide Combined With Luteoline in Frontotemporal Dementia Patients. A Randomized Controlled Trial |
| NCT04937452 | PHASE2 | COMPLETED | Dopaminergic Therapy for Frontotemporal Dementia Patients |
| NCT04993755 | PHASE2 | COMPLETED | A Phase 2a Study of TPN-101 in Patients With C9ORF72 ALS/FTD |
| NCT05742698 | PHASE2 | RECRUITING | Nabilone for Agitation in Frontotemporal Dementia |
| NCT06604520 | PHASE2 | RECRUITING | Vortioxetine for the Treatment of Mood and Cognitive Symptoms in Frontotemporal Dementia |
| NCT07154485 | PHASE2 | NOT_YET_RECRUITING | Investigator Initiated Study for the Safety and Efficacy in Frontotemporal Dementia |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT01386333 | PHASE1 | COMPLETED | Safety Study of Intranasal Oxytocin in Frontotemporal Dementia |
| NCT03040713 | PHASE1 | COMPLETED | Flortaucipir PET Imaging in Subjects With FTD |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): frontotemporal dementia, migraine disorder