MAVS
geneOn this page
Also known as VISAKIAA1271IPS-1Cardif
Summary
MAVS (mitochondrial antiviral signaling protein, HGNC:29233) is a protein-coding gene on chromosome 20p13, encoding Mitochondrial antiviral-signaling protein (Q7Z434). Adapter required for innate immune defense against viruses.
This gene encodes an intermediary protein necessary in the virus-triggered beta interferon signaling pathways. It is required for activation of transcription factors which regulate expression of beta interferon and contributes to antiviral innate immunity.
Source: NCBI Gene 57506 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 95 total — 1 pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_020746
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29233 |
| Approved symbol | MAVS |
| Name | mitochondrial antiviral signaling protein |
| Location | 20p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | VISA, KIAA1271, IPS-1, Cardif |
| Ensembl gene | ENSG00000088888 |
| Ensembl biotype | protein_coding |
| OMIM | 609676 |
| Entrez | 57506 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000416600, ENST00000428216, ENST00000883968, ENST00000883969, ENST00000883970, ENST00000883971, ENST00000972011
RefSeq mRNA: 3 — MANE Select: NM_020746
NM_001206491, NM_001385663, NM_020746
CCDS: CCDS33437, CCDS56176
Canonical transcript exons
ENST00000428216 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000858884 | 3857635 | 3857809 |
| ENSE00001044690 | 3846834 | 3846903 |
| ENSE00001694829 | 3865683 | 3876118 |
| ENSE00003473192 | 3862254 | 3862413 |
| ENSE00003506892 | 3861332 | 3861504 |
| ENSE00003522240 | 3864256 | 3864788 |
| ENSE00003547921 | 3854558 | 3854741 |
Expression profiles
Bgee: expression breadth ubiquitous, 277 present calls, max score 91.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.6769 / max 100.7770, expressed in 1813 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 183234 | 28.6022 | 1813 |
| 183235 | 0.0747 | 16 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 91.96 | gold quality |
| heart right ventricle | UBERON:0002080 | 91.74 | gold quality |
| colonic mucosa | UBERON:0000317 | 91.58 | gold quality |
| mammary duct | UBERON:0001765 | 91.26 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 91.23 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 91.05 | gold quality |
| biceps brachii | UBERON:0001507 | 90.92 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 90.90 | gold quality |
| gastrocnemius | UBERON:0001388 | 90.40 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 90.26 | gold quality |
| muscle of leg | UBERON:0001383 | 90.14 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 89.99 | gold quality |
| muscle organ | UBERON:0001630 | 89.89 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 89.67 | gold quality |
| jejunum | UBERON:0002115 | 89.65 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 89.11 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.04 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 88.63 | gold quality |
| vastus lateralis | UBERON:0001379 | 88.59 | gold quality |
| quadriceps femoris | UBERON:0001377 | 88.52 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.51 | gold quality |
| muscle tissue | UBERON:0002385 | 88.44 | gold quality |
| adult organism | UBERON:0007023 | 88.37 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 88.01 | gold quality |
| superficial temporal artery | UBERON:0001614 | 87.95 | gold quality |
| buccal mucosa cell | CL:0002336 | 87.93 | gold quality |
| diaphragm | UBERON:0001103 | 87.68 | gold quality |
| bronchial epithelial cell | CL:0002328 | 87.65 | gold quality |
| stromal cell of endometrium | CL:0002255 | 87.64 | gold quality |
| renal medulla | UBERON:0000362 | 87.56 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.69 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| IFNB1 | Activation |
Upstream regulators (CollecTRI, top): IRF3, NFKB
miRNA regulators (miRDB)
352 targeting MAVS, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
Literature-anchored findings (GeneRIF, showing 40)
- Mitochondrial antiviral signaling (MAVS) mediates the activation of NF-kappaB and IRF 3 in response to viral infection, and transmembrane domain targets MAVS to the mitochondria, implicating a new role of mitochondria in innate immunity. (PMID:16125763)
- Data suggest that VISA is critically involved in both virus-triggered TLR3-independent and TLR3-mediated antiviral interferon signaling. (PMID:16153868)
- KIAA1271 (aka Cardif, MAVS, VISA, IPS-1) has been shown to be targeted by hepatitis c virus (HCV) NS3/4A protease. This cleavage interferes with the Rig-I mediated dsRNA sensing pathway and therefore with the activation of IRF-3. (PMID:16177806)
- HCV infection transiently induces RIG-I- and IPS-1-dependent IRF-3 activation (PMID:16585524)
- HCV blocks the dsRNA signaling by an NS3/4A-independent mechanism, in addition to the NS3/4A-dependent cleavage of MAVS/IPS-1. (PMID:16707574)
- HCV NS3-4A cleavage of human MAVS/IPS-1/VISA/Cardif/K1271 results in its dissociation from the mitochondrial membrane and disrupts signaling to the antiviral immune response (PMID:16731946)
- Cardif induces interferon (IFN)alpha through a direct and specific interaction with the TRAF domain of TRAF3, implicating Cardif as the link between cytoplasmic viral receptors and TRAF3. (PMID:16858409)
- IPS-1, IRF3, and IFNbeta have critical roles in Legionella infection of lung epithelium (PMID:16984921)
- GBV-B NS3/4A protease specifically cleaves VISA and dislodges it from mitochondria, thereby disrupting its function as a RIG-I adaptor and blocking downstream activation of both interferon regulatory factor 3 and nuclear factor kappa B. (PMID:17093192)
- IPS-1 is an essential component of the pathway relevant to polyinosinic-polycytidylic acid signaling of type I interferon in intestinal epithelial cells. (PMID:17911629)
- This study uncovers MAVS splicing variants of diverse biological function. (PMID:18207245)
- Models show a very different charge profile for the equivalent surfaces compared to IPS-1/MAVS/VISA/Cardif CARD. (PMID:18307765)
- RIG-1 - MAVS interacts with cytoplasmic 100-kDa NF-kappa B2 complexes via a novel retinoic acid-inducible gene-I - NF- kappa B-inducing kinase signaling pathway (PMID:18550535)
- The role of MAVS in apoptosis was investigated. (PMID:18692023)
- This paper describes the biochemical regulation and behavior of MAVS during apoptosis. (PMID:18692023)
- Inactivation of Trif and Cardif can also occur through cellular caspases activated by various pro-apoptotic signals. (PMID:18756281)
- PKR facilitates the host innate immune response and apoptosis in virus-infected cells by mediating IRF-3 activation through the mitochondrial IPS-1 signal transduction pathway (PMID:18927075)
- Upon Sendai virus (SeV) infection, TBK1s is induced in both human and mouse cells and binds to RIG-1, disrupting the interaction between RIG-I and VISA (PMID:18977754)
- IPS-1 requires TRAF6 and MEKK1 to activate NF-kappaB and mitogen-activated protein kinases that are critical for the optimal induction of type I interferons (PMID:18984593)
- PKR, in addition to IPS-1 and IRF3 but not TRIF, was required for maximal type I IFN-beta induction and the induction of apoptosis by both transfected PRNAs and polyinosinic-polycytidylic acid. (PMID:19028691)
- The activation of RIG-I/MDA-5 leads to the C-terminal transmembrane-dependent dimerization of the MAVS N-terminal caspase recruitment domain, thereby providing an interface for direct binding to and activation of the downstream effector TRAF3. (PMID:19193783)
- Data show that DeltaIPS-1 could decrease the secretory volume of IFN-beta in HEK293T cell and could not completely suppress the CPE of the cell infected by HSV-1. (PMID:19351494)
- recruitment of IKKepsilon to the mitochondria upon MAVS K500 ubiquitination plays a modulatory role in the cascade leading to NF-kappaB activation and expression of inflammatory and antiviral genes (PMID:19380491)
- Polo-like kinase 1 (PLK1) regulates interferon (IFN) induction by MAVS (PMID:19546225)
- Report shows that Rig-I, but not MAVS, is cleaved during cytomegalovirus infection. (PMID:19591957)
- show that interferon-beta promoter stimulator 1 (IPS-1) binds DAP3 and induces anoikis by caspase activation. (PMID:19644511)
- Data revealed that Mfn2 interacted with the carboxyl-terminal region of MAVS through a heptad repeat region, providing a structural perspective on the regulation of the mitochondrial antiviral response. (PMID:19690333)
- recognition of a viral ssRNA genome, Nod2 used the adaptor protein MAVS to activate IRF3. (PMID:19701189)
- PCBP2-AIP4 axis defines a new signaling cascade for MAVS degradation and ‘fine tuning’ of antiviral innate immunity. (PMID:19881509)
- c-Abl modulates innate immune response through MAVS. (PMID:19914245)
- study reports MAVS protein level is reduced in Dengue virus-infected cells & that caspases 1 & 3 cleave MAVS at residue D429; MAVS is also a proapoptotic molecule that triggers disruption of the mitochondrial membrane potential & activation of caspases (PMID:20032188)
- the pre-activation status of the endogenous IFN system in the liver of patients with CHC is in part regulated by cleavage of MAVS. (PMID:20044805)
- DDX3 can bind viral RNA to join it in the IPS-1 complex. The 622-662 a.a DDX3 C-terminal region directly bound to the IPS-1 CARD-like domain. (PMID:20127681)
- Chlamydia pneumoniae infection of vascular endothelial cells activates mitochondrial antiviral signaling protein (MAVS) which stimulates IRF3- and IRF7-dependent signals controlling bacterial growth and modulating development of vascular lesions. (PMID:20154210)
- Influenza virus A PB2 protein interacts with MAVS and inhibits MAVS-mediated beta interferon expression. (PMID:20538852)
- Study suggests that HBV can target the RIG-I signaling by HBX-mediated MAVS downregulation, thereby attenuating the antiviral response of the innate immune system. (PMID:20554965)
- viral infection as well as transfection with 5’ppp-RNA resulted in the redistribution of IPS-1 to form speckle-like aggregates in cells. (PMID:20661427)
- These findings demonstrate that the viral polymerase plays an important role for regulating host anti-viral response through the binding to IPS-1 and inhibition of IFNbeta production. (PMID:20699220)
- indicate that Hepatitis B virus X protein inhibits signaling by components upstream but not downstream of VISA (PMID:20711230)
- Chikungunya virus induces via IPS-1 accumulation of IRF-3 dependent antiviral gene mRNA. (PMID:20962078)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mavs | ENSDARG00000069733 |
| mus_musculus | Mavs | ENSMUSG00000037523 |
| rattus_norvegicus | Mavs | ENSRNOG00000025295 |
Protein
Protein identifiers
Mitochondrial antiviral-signaling protein — Q7Z434 (reviewed: Q7Z434)
Alternative names: CARD adapter inducing interferon beta, Interferon beta promoter stimulator protein 1, Putative NF-kappa-B-activating protein 031N, Virus-induced-signaling adapter
All UniProt accessions (1): Q7Z434
UniProt curated annotations — full annotation on UniProt →
Function. Adapter required for innate immune defense against viruses. Acts downstream of DHX33, RIGI and IFIH1/MDA5, which detect intracellular dsRNA produced during viral replication, to coordinate pathways leading to the activation of NF-kappa-B, IRF3 and IRF7, and to the subsequent induction of antiviral cytokines such as IFNB and RANTES (CCL5). Peroxisomal and mitochondrial MAVS act sequentially to create an antiviral cellular state. Upon viral infection, peroxisomal MAVS induces the rapid interferon-independent expression of defense factors that provide short-term protection, whereas mitochondrial MAVS activates an interferon-dependent signaling pathway with delayed kinetics, which amplifies and stabilizes the antiviral response. May activate the same pathways following detection of extracellular dsRNA by TLR3. May protect cells from apoptosis. Involved in NLRP3 inflammasome activation by mediating NLRP3 recruitment to mitochondria.
Subunit / interactions. Self-associates and polymerizes (via CARD domains) to form 400 nM long three-stranded helical filaments on mitochondria, filament nucleation requires interaction with RIGI whose CARD domains act as a template for filament assembly. Interacts with RIGI, IFIH1/MDA5, TRAF2, TRAF6 and C1QBP. May interact with FADD, RIPK1, CHUK and IKBKB. Interacts (when phosphorylated) with IRF3; following activation and phosphorylation on the pLxIS motif by TBK1, recruits IRF3. Interacts with NLRX1. Interaction with NLRX1 requires the CARD domain. Interacts with PSMA7. Interacts with TRAFD1. Interacts (via C-terminus) with PCBP2 in a complex containing MAVS/IPS1, PCBP2 and ITCH. Interacts with CYLD. Interacts with SRC. Interacts with DHX58/LGP2 and IKBKE. Interacts with STING1. Interacts with IFIT3 (via N-terminus). Interacts with TBK1 only in the presence of IFIT3. Interacts with TTLL12; the interaction prevents MAVS binding to TBK1 and IKBKE. Interacts with MUL1. Interacts with ANKRD17. Interacts with NDFIP1. Interacts with SMURF1; the interaction is mediated by NDFIP1 and leads to MAVS ubiquitination and degradation. Interacts with UBXN1; this interaction inhibits MAVS-mediated antiviral pathway. Interacts (via C-terminus) with GPATCH3; the interaction is markedly increased upon viral infection. Directly interacts (via CARD domain) with ATG5 and ATG12, either as ATG5 and ATG12 monomers or as ATG12-ATG5 conjugates. Interacts with DHX33 (via the helicase C-terminal domain). Interacts with DDX3X (via C-terminus); this interaction occurs rapidly, but transiently after Sendai virus infection. The interaction with DDX3X potentiates MAVS-mediated IFNB induction. Conversely inhibition of this interaction, for instance by HCV core protein, prevents MAVS-mediated IFNB induction. Transiently interacts with TRAF3 early during Sendai virus infection. Interacts with CLPB; the interaction is enhanced by Sendai virus infection. Interacts with TRAF3IP3. Interacts with TOMM70; the interaction is enhanced by Sendai virus infection. Interacts with ZNFX1. Interacts with N4BP3; this interaction promotes the polyubiquitination of MAVS. Interacts with TAX1BP1; this interaction induces MAVS polyubiquitination. Interacts with NLRP3; promoting NLRP3 recruitment to mitochondria and activation of the NLRP3 inflammasome. Interacts with ECSIT; this interaction bridges RIGI to the MAVS complex at the mitochondrion. Interacts with UBL7; this interaction promotes MAVS ‘Lys-27’-linked ubiquitination leading to type I interferon production. Interacts (via transmembrane domain) with SMIM30/MAVI1 (via transmembrane domain); the interaction disrupts MAVS interaction with RIGI and inhibits MAVS aggregation, resulting in the repression of type I interferon signaling and innate immune responses. (Microbial infection) Interacts with hepatitis C virus (HCV) NS3/4A protease; this interaction leads to MAVS cleavage, thereby preventing the establishment of an antiviral state. (Microbial infection) Interacts with hepatitis GB virus B NS3/4A protease; this interaction leads to MAVS cleavage. (Microbial infection) Interacts with human respiratory syncytial virus/HRSV protein NS1; this interaction disrupts MAVS binding to RIGI. (Microbial infection) Interacts with Andes virus Nnon-structural protein NS-S; this interaction may reduce MAVS ubiquitination and leads to inhibition of MAVS-induced type-I IFN signaling pathway. (Microbial infection) Interacts with Seneca Valley virus protease 3C; this interaction allows the cleavage of MAVS and subsequent suppression of host innate immunity. (Microbial infection) Interacts with SARS-CoV virus protein ORF9b; this interaction mediates MAVS proteasomal degradation. (Microbial infection) Interacts with SARS-CoV-2 virus protein M; this interaction impairs MAVS self-association and its recruitment of downstream components. (Microbial infection) Interacts with foot-and-mouth disease virus protein VP1; this interaction competes with TRAF3 interaction to MAVS leading to suppression of host innate immunity. (Microbial infection) Interacts with Epstein-Barr virus protein BILF1; this interaction mediates MAVS routing from mitochondria to lysosomes. (Microbial infection) Interacts with human enterovirus D68 protein VP3; this interaction inhibits MAVS leading to suppression of host innate immunity.
Subcellular location. Mitochondrion outer membrane. Mitochondrion. Peroxisome.
Tissue specificity. Present in T-cells, monocytes, epithelial cells and hepatocytes (at protein level). Ubiquitously expressed, with highest levels in heart, skeletal muscle, liver, placenta and peripheral blood leukocytes.
Post-translational modifications. Following activation, phosphorylated by TBK1 at Ser-442 in the pLxIS motif. The phosphorylated pLxIS motif constitutes an IRF3-binding motif, leading to recruitment of the transcription factor IRF3 to induce type-I interferons and other cytokines. Ubiquitinated. Undergoes ‘Lys-48’-linked polyubiquitination catalyzed by ITCH; ITCH-dependent polyubiquitination is mediated by the interaction with PCBP2 and leads to MAVS/IPS1 proteasomal degradation. Ubiquitinated by RNF125, leading to its degradation by the proteasome. Undergoes ‘Lys-48’-linked ubiquitination catalyzed by SMURF1. Undergoes ‘Lys-48’-linked ubiquitination catalyzed by MARCHF5 at Lys-7 and Lys-500, leading to proteasomal degradation. Ubiquitinated via ‘Lys-63’-linked ubiquitination at Lys-10, Lys-311 and Lys-461 by UBE2N and TRIM31, promoting MAVS polymerization and formation of three-stranded helical filaments on mitochondria. Undergoes ‘Lys-63’-linked ubiquitination leading to enhanced interaction between MAVS and TRAF2. Undergoes ‘Lys-27’-linked ubiquitination by TRIM21 leading to enhanced interaction between MAVS and TBK1. Deubiquitinated by USP10 leading to attenuation of RIGI-mediated MAVS aggregation and production of type I interferon. Undergoes ‘Lys-48’-linked polyubiquitination catalyzed by RNF115 leading to its degradation. Deubiquitinated by USP4 at Lys-461, leading to maintain MAVS protein stability, resulting in increased production of type I interferons (IFN-I) and enhanced antiviral innate immune responses against viral infections. Palmitoylated by ZHDDC4. Palmitoylation promotes MAVS stabilization and activation by inhibiting ‘Lys-48’- but facilitating ‘Lys-63’-linked ubiquitination. Proteolytically cleaved by apoptotic caspases during apoptosis, leading to its inactivation. Cleavage by CASP3 during virus-induced apoptosis inactivates it, preventing cytokine overproduction. (Microbial infection) Cleaved and degraded by hepatitis A virus (HAV) protein 3ABC allowing the virus to disrupt the activation of host IRF3 through the MDA5 pathway. (Microbial infection) Cleaved by the protease 2A of coxsackievirus B3, poliovirus and enterovirus 71 allowing the virus to disrupt the host type I interferon production. (Microbial infection) Cleaved by Seneca Valley virus protease 3C allowing the virus to suppress interferon type-I production. (Microbial infection) Cleaved by HCV protease NS3/4A, thereby preventing the establishment of an antiviral state. (Microbial infection) UFMylated by ULF1 in association with Epstein-Barr virus BILF1; leading to MAVS routing to the lysosome.
Domain organisation. The pLxIS motif constitutes an IRF3-binding motif: following phosphorylation by TBK1, the phosphorylated pLxIS motif of MAVS recruits IRF3. IRF3 is then phosphorylated and activated by TBK1 to induce type-I interferons and other cytokines. Both CARD and transmembrane domains are essential for antiviral function. The CARD domain is responsible for interaction with RIGI and IFIH1/MDA5. The transmembrane domain and residues 300-444 are essential for its interaction with DHX58/LGP2.
Miscellaneous. Selectively activates an IFNbeta but not an IL8 promoter. Interacts with RIP1 and FADD and exhibits anti-viral activity against VSV infection.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q7Z434-1 | 1 | yes |
| Q7Z434-2 | 2 | |
| Q7Z434-3 | 3 | |
| Q7Z434-4 | 4 | |
| Q7Z434-5 | 5, MAVS1b, exon 3 deletion | |
| Q7Z434-6 | 6, MAVS1a, exon 2 deletion |
RefSeq proteins (3): NP_001193420, NP_001372592, NP_065797* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011029 | DEATH-like_dom_sf | Homologous_superfamily |
| IPR031964 | CARD_dom | Domain |
| IPR042144 | CARD_IPS1 | Domain |
| IPR052787 | MAVS | Family |
Pfam: PF16739
UniProt features (116 total): mutagenesis site 30, modified residue 16, compositionally biased region 9, site 9, region of interest 8, helix 8, splice variant 8, cross-link 7, sequence variant 5, sequence conflict 4, strand 3, initiator methionine 2, topological domain 2, chain 1, short sequence motif 1, transmembrane region 1, lipid moiety-binding region 1, domain 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3RC5 | X-RAY DIFFRACTION | 1.6 |
| 2VGQ | X-RAY DIFFRACTION | 2.1 |
| 5JEK | X-RAY DIFFRACTION | 2.4 |
| 4Z8M | X-RAY DIFFRACTION | 2.95 |
| 7DNI | ELECTRON MICROSCOPY | 3.2 |
| 8WKW | ELECTRON MICROSCOPY | 3.21 |
| 4P4H | X-RAY DIFFRACTION | 3.4 |
| 3J6J | ELECTRON MICROSCOPY | 3.64 |
| 3J6C | ELECTRON MICROSCOPY | 9.6 |
| 2MS7 | SOLID-STATE NMR | |
| 2MS8 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7Z434-F1 | 56.31 | 0.19 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (9): 148–149 ((microbial infection) cleavage; by viral seneca valley virus protease 3c); 148 ((microbial infection) cleavage by cv3b); 208–209 ((microbial infection) cleavage by protease 2a of enterovirus 71); 250–251 ((microbial infection) cleavage by protease 2a of enterovirus 71); 264–265 ((microbial infection) cleavage by protease 2a of enterovirus 71); 427–428 ((microbial infection) cleavage; by hav protein 3abc); 429–430 (cleavage; by casp3); 490–491 (cleavage; by casp3); 508–509 ((microbial infection) cleavage; by hcv and hepatitis gb virus b ns3/4a protease complex)
Post-translational modifications (24): 2, 2, 152, 157, 165, 180, 188, 215, 222, 233, 234, 236, 253, 258, 408, 442, 79, 7, 10, 311 …
Mutagenesis-validated functional residues (30):
| Position | Phenotype |
|---|---|
| 7 | abolished ubiquitination by marchf5; when associated with r-500. |
| 10 | abolished ubiquitination by trim31; when associated with r-311 and r-461. |
| 26 | impairs filament formation and abolishes antiviral signaling activity. |
| 54 | impairs ability to induce ifn-beta. loss of interaction with the atg5-atg12 conjugate. |
| 56 | impairs filament formation and abolishes antiviral signaling activity. |
| 67–69 | impairs ability to induce ifn-beta. |
| 145 | no interaction with traf2. |
| 148 | complete loss of cleavage by seneca valley virus protease 3c. |
| 155 | no interaction with traf6; when associated with d-457. |
| 159 | no effect on cleavage by seneca valley virus protease 3c. |
| 162 | no effect on cleavage by seneca valley virus protease 3c. |
| 196 | no effect on cleavage by seneca valley virus protease 3c. |
| 198 | no effect on cleavage by seneca valley virus protease 3c. |
| 209 | complete loss of cleavage by protease 2a of enterovirus 71. |
| 251 | complete loss of cleavage by protease 2a of enterovirus 71. |
| 265 | complete loss of cleavage by enterovirus 71. |
| 311 | abolished ubiquitination by trim31; when associated with r-10 and r-461. |
| 325 | abolished ubiquitination by trim21. |
| 427 | no cleavage by hhav 3abc. |
| 429 | decreased cleavage by casp3. abolished cleavage by casp3; when associated with a-490. |
| 435 | no effect on cleavage by ns3/4a protease complex. |
| 442 | abolished ability to bind and activate irf3. |
| 452 | no effect on cleavage by ns3/4a protease complex. |
| 457 | no interaction with traf6; when associated with d-155. |
| 461 | abolished ubiquitination by trim31; when associated with r-10 and r-311. |
Function
Pathways and Gene Ontology
Reactome pathways
30 pathways
| ID | Pathway |
|---|---|
| R-HSA-168928 | DDX58/IFIH1-mediated induction of interferon-alpha/beta |
| R-HSA-5689896 | Ovarian tumor domain proteases |
| R-HSA-918233 | TRAF3-dependent IRF activation pathway |
| R-HSA-933541 | TRAF6 mediated IRF7 activation |
| R-HSA-933542 | TRAF6 mediated NF-kB activation |
| R-HSA-933543 | NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10 |
| R-HSA-936440 | Negative regulators of DDX58/IFIH1 signaling |
| R-HSA-9692916 | SARS-CoV-1 activates/modulates innate immune responses |
| R-HSA-9705671 | SARS-CoV-2 activates/modulates innate and adaptive immune responses |
| R-HSA-9833109 | Evasion by RSV of host interferon responses |
| R-HSA-9833482 | PKR-mediated signaling |
| R-HSA-9920588 | Dengue virus activates/modulates innate and adaptive immune responses |
| R-HSA-1169410 | Antimicrobial mechanism of IFN-stimulated genes |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1643685 | Disease |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5663205 | Infectious disease |
| R-HSA-5688426 | Deubiquitination |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-913531 | Interferon Signaling |
| R-HSA-9678108 | SARS-CoV-1 Infection |
| R-HSA-9679506 | SARS-CoV Infections |
| R-HSA-9692914 | SARS-CoV-1-host interactions |
| R-HSA-9694516 | SARS-CoV-2 Infection |
| R-HSA-9705683 | SARS-CoV-2-host interactions |
| R-HSA-9820952 | Respiratory Syncytial Virus Infection Pathway |
| R-HSA-9824446 | Viral Infection Pathways |
| R-HSA-9833110 | RSV-host interactions |
MSigDB gene sets: 336 (showing top):
REACTOME_DDX58_IFIH1_MEDIATED_INDUCTION_OF_INTERFERON_ALPHA_BETA, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_UP, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, HORIUCHI_WTAP_TARGETS_DN, WANG_CLIM2_TARGETS_UP, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_TYPE_I_INTERFERON_PRODUCTION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GOBP_POSITIVE_REGULATION_OF_INTERLEUKIN_8_PRODUCTION, GOBP_REGULATION_OF_DEFENSE_RESPONSE_TO_VIRUS, GOBP_RESPONSE_TO_PEPTIDE, GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION_INVOLVED_IN_IMMUNE_RESPONSE, GOBP_POSITIVE_REGULATION_OF_INTRACELLULAR_PROTEIN_TRANSPORT
GO Biological Process (34): activation of innate immune response (GO:0002218), positive regulation of defense response to virus by host (GO:0002230), positive regulation of myeloid dendritic cell cytokine production (GO:0002735), cytoplasmic pattern recognition receptor signaling pathway (GO:0002753), signal transduction (GO:0007165), positive regulation of type I interferon production (GO:0032481), positive regulation of interferon-alpha production (GO:0032727), positive regulation of interferon-beta production (GO:0032728), positive regulation of interleukin-6 production (GO:0032755), positive regulation of interleukin-8 production (GO:0032757), positive regulation of tumor necrosis factor production (GO:0032760), cellular response to interferon-beta (GO:0035458), intracellular signal transduction (GO:0035556), positive regulation of protein import into nucleus (GO:0042307), defense response to bacterium (GO:0042742), positive regulation of canonical NF-kappaB signal transduction (GO:0043123), negative regulation of viral genome replication (GO:0045071), innate immune response (GO:0045087), positive regulation of transcription by RNA polymerase II (GO:0045944), protein tetramerization (GO:0051262), defense response to virus (GO:0051607), type I interferon-mediated signaling pathway (GO:0060337), positive regulation of type I interferon-mediated signaling pathway (GO:0060340), positive regulation of response to cytokine stimulus (GO:0060760), protein localization to mitochondrion (GO:0070585), cellular response to exogenous dsRNA (GO:0071360), positive regulation of chemokine (C-C motif) ligand 5 production (GO:0071651), positive regulation of IP-10 production (GO:0071660), antiviral innate immune response (GO:0140374), regulation of peroxisome organization (GO:1900063), positive regulation of NLRP3 inflammasome complex assembly (GO:1900227), immune system process (GO:0002376), mRNA transcription (GO:0009299), NLRP3 inflammasome complex assembly (GO:0044546)
GO Molecular Function (10): protein kinase binding (GO:0019901), protein-macromolecule adaptor activity (GO:0030674), signaling adaptor activity (GO:0035591), identical protein binding (GO:0042802), CARD domain binding (GO:0050700), molecular adaptor activity (GO:0060090), protein serine/threonine kinase binding (GO:0120283), DNA-binding transcription factor binding (GO:0140297), molecular condensate scaffold activity (GO:0140693), protein binding (GO:0005515)
GO Cellular Component (7): ubiquitin ligase complex (GO:0000151), mitochondrion (GO:0005739), mitochondrial outer membrane (GO:0005741), peroxisomal membrane (GO:0005778), mitochondrial membrane (GO:0031966), peroxisome (GO:0005777), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| DDX58/IFIH1-mediated induction of interferon-alpha/beta | 5 |
| Immune System | 2 |
| Innate Immune System | 1 |
| Deubiquitination | 1 |
| SARS-CoV-1-host interactions | 1 |
| SARS-CoV-2-host interactions | 1 |
| RSV-host interactions | 1 |
| Antimicrobial mechanism of IFN-stimulated genes | 1 |
| Dengue Virus-Host Interactions | 1 |
| Interferon Signaling | 1 |
| Disease | 1 |
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| positive regulation of cytokine production | 4 |
| positive regulation of type I interferon production | 2 |
| protein binding | 2 |
| protein-macromolecule adaptor activity | 2 |
| binding | 2 |
| activation of immune response | 1 |
| positive regulation of innate immune response | 1 |
| regulation of defense response to virus by host | 1 |
| myeloid dendritic cell cytokine production | 1 |
| positive regulation of dendritic cell cytokine production | 1 |
| regulation of myeloid dendritic cell cytokine production | 1 |
| positive regulation of myeloid leukocyte mediated immunity | 1 |
| positive regulation of myeloid leukocyte cytokine production involved in immune response | 1 |
| pattern recognition receptor signaling pathway | 1 |
| intracellular receptor signaling pathway | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| regulation of type I interferon production | 1 |
| type I interferon production | 1 |
| interferon-alpha production | 1 |
| regulation of interferon-alpha production | 1 |
| interferon-beta production | 1 |
| regulation of interferon-beta production | 1 |
| interleukin-6 production | 1 |
| regulation of interleukin-6 production | 1 |
| interleukin-8 production | 1 |
| regulation of interleukin-8 production | 1 |
| tumor necrosis factor production | 1 |
| regulation of tumor necrosis factor production | 1 |
| positive regulation of tumor necrosis factor superfamily cytokine production | 1 |
| response to interferon-beta | 1 |
| cellular response to cytokine stimulus | 1 |
| intracellular anatomical structure | 1 |
| signal transduction | 1 |
| protein import into nucleus | 1 |
| regulation of protein import into nucleus | 1 |
| positive regulation of nucleocytoplasmic transport | 1 |
Protein interactions and networks
STRING
2750 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MAVS | TBK1 | Q9UHD2 | 999 |
| MAVS | RIGI | O95786 | 999 |
| MAVS | IFIH1 | Q9BYX4 | 999 |
| MAVS | DHX58 | Q96C10 | 998 |
| MAVS | IKBKE | Q14164 | 998 |
| MAVS | NLRX1 | Q86UT6 | 997 |
| MAVS | TRAF3 | Q13114 | 996 |
| MAVS | TRAF6 | Q9Y4K3 | 994 |
| MAVS | IRF3 | Q14653 | 987 |
| MAVS | ATG12 | O94817 | 986 |
| MAVS | NLRP3 | Q96P20 | 983 |
| MAVS | ATG5 | Q9H1Y0 | 982 |
| MAVS | STING1 | Q86WV6 | 968 |
| MAVS | TRADD | Q15628 | 963 |
| MAVS | NOD2 | Q9HC29 | 952 |
IntAct
289 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAVS | RIGI | psi-mi:“MI:0914”(association) | 0.960 |
| MAVS | RIGI | psi-mi:“MI:0915”(physical association) | 0.960 |
| RIGI | MAVS | psi-mi:“MI:0915”(physical association) | 0.960 |
| RIGI | MAVS | psi-mi:“MI:0914”(association) | 0.960 |
| TBK1 | TBKBP1 | psi-mi:“MI:0914”(association) | 0.860 |
| STING1 | MAVS | psi-mi:“MI:0915”(physical association) | 0.840 |
| SOD1 | CCS | psi-mi:“MI:0914”(association) | 0.830 |
| PLK1 | SPAG9 | psi-mi:“MI:0914”(association) | 0.790 |
| MAVS | IFIH1 | psi-mi:“MI:0915”(physical association) | 0.770 |
| IKBKE | CDC37 | psi-mi:“MI:0914”(association) | 0.770 |
| HSPA8 | GAK | psi-mi:“MI:0914”(association) | 0.760 |
| TRAF2 | MAVS | psi-mi:“MI:0915”(physical association) | 0.740 |
| MAVS | psi-mi:“MI:0915”(physical association) | 0.730 | |
| MAVS | psi-mi:“MI:0407”(direct interaction) | 0.730 | |
| MAVS | psi-mi:“MI:0403”(colocalization) | 0.730 | |
| MAVS | psi-mi:“MI:0914”(association) | 0.730 |
BioGRID (730): MIB2 (Affinity Capture-MS), MAVS (Affinity Capture-Western), MAVS (Two-hybrid), ABL1 (Affinity Capture-Western), MAVS (Affinity Capture-Western), MAVS (Far Western), MAVS (Affinity Capture-MS), MAVS (Affinity Capture-MS), MAVS (Affinity Capture-MS), MAVS (Affinity Capture-MS), IFIT3 (Affinity Capture-Western), TBK1 (Affinity Capture-Western), MAVS (Affinity Capture-Western), MAVS (Affinity Capture-Western), MAVS (Affinity Capture-Western)
ESM2 similar proteins: A0A096MK47, A0A1D5RMD1, A2AQH4, A6NCI8, A8MUA0, A8MX80, B2RRE4, B7ZNG4, E9Q3S4, O15027, O94854, P70670, Q0GGX2, Q12802, Q12815, Q3URK3, Q3V0A6, Q5DTT3, Q5F2C3, Q5FW52, Q5H9F3, Q5SW25, Q5SWP3, Q5VV67, Q5VWP3, Q5VYM1, Q66HG9, Q69ZZ9, Q6NXZ1, Q6NZN1, Q6P1W5, Q711Q0, Q7TSG5, Q7Z434, Q86TB3, Q8K4E0, Q8N5Q1, Q8N9G6, Q8NFU7, Q8VCF0
Diamond homologs: Q66HG9, Q7Z434, Q8VCF0
SIGNOR signaling
22 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MAVS | up-regulates | CASP8 | relocalization |
| DDX58 | “up-regulates activity” | MAVS | binding |
| IFIH1 | “up-regulates activity” | MAVS | binding |
| MAVS | “up-regulates activity” | IRF3 | binding |
| MAVS | “up-regulates activity” | IKBKE | binding |
| MAVS | “up-regulates activity” | TBK1 | binding |
| MAVS | “up-regulates activity” | STING1 | binding |
| 9b | “down-regulates quantity by destabilization” | MAVS | |
| NLRX1 | “down-regulates activity” | MAVS | binding |
| PCBP2 | “down-regulates quantity by destabilization” | MAVS | binding |
| ITCH | “down-regulates quantity by destabilization” | MAVS | ubiquitination |
| ECSIT | “up-regulates activity” | MAVS | binding |
| MAVS | “up-regulates quantity by expression” | IFNB1 | “transcriptional regulation” |
| M | “down-regulates activity” | MAVS | binding |
| RNF5 | “down-regulates quantity by destabilization” | MAVS | ubiquitination |
| TRIM25 | “down-regulates quantity by destabilization” | MAVS | polyubiquitination |
| FAF1 | “down-regulates activity” | MAVS | binding |
| PRKACA | “down-regulates activity” | MAVS | phosphorylation |
| ABL1 | “up-regulates activity” | MAVS | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 161 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| TRAF3-dependent IRF activation pathway | 6 | 41.5× | 7e-07 |
| Activation of IRF3, IRF7 mediated by TBK1, IKKε (IKBKE) | 5 | 27.3× | 6e-05 |
| TRAF6 mediated NF-kB activation | 6 | 24.9× | 1e-05 |
| TRAF6 mediated IRF7 activation | 7 | 24.2× | 2e-06 |
| SARS-CoV-1 activates/modulates innate immune responses | 9 | 22.2× | 6e-08 |
| Negative regulators of DDX58/IFIH1 signaling | 7 | 20.8× | 4e-06 |
| PINK1-PRKN Mediated Mitophagy | 5 | 16.2× | 4e-04 |
| DDX58/IFIH1-mediated induction of interferon-alpha/beta | 7 | 16.1× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic pattern recognition receptor signaling pathway | 7 | 43.7× | 7e-08 |
| cellular response to exogenous dsRNA | 5 | 37.1× | 3e-05 |
| positive regulation of interferon-alpha production | 7 | 31.9× | 3e-07 |
| positive regulation of interferon-beta production | 9 | 24.8× | 7e-08 |
| positive regulation of type I interferon production | 8 | 23.7× | 3e-07 |
| type I interferon-mediated signaling pathway | 9 | 21.8× | 1e-07 |
| toll-like receptor 4 signaling pathway | 5 | 18.5× | 6e-04 |
| canonical NF-kappaB signal transduction | 6 | 15.5× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
95 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 58 |
| Likely benign | 7 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 973562 | NC_000020.11:g.3863511_3918336del | Pathogenic |
SpliceAI
1470 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:3854556:A:AG | acceptor_gain | 1.0000 |
| 20:3854557:G:GT | acceptor_gain | 1.0000 |
| 20:3854557:GT:G | acceptor_gain | 1.0000 |
| 20:3854557:GTCT:G | acceptor_gain | 1.0000 |
| 20:3854557:GTCTC:G | acceptor_gain | 1.0000 |
| 20:3854738:CCAGG:C | donor_loss | 1.0000 |
| 20:3854742:G:GC | donor_loss | 1.0000 |
| 20:3854743:T:G | donor_loss | 1.0000 |
| 20:3854752:G:T | donor_gain | 1.0000 |
| 20:3857805:GCCTC:G | donor_gain | 1.0000 |
| 20:3857810:G:GG | donor_gain | 1.0000 |
| 20:3861501:A:T | donor_gain | 1.0000 |
| 20:3862250:GCAG:G | acceptor_loss | 1.0000 |
| 20:3862252:A:AG | acceptor_gain | 1.0000 |
| 20:3862253:G:GG | acceptor_gain | 1.0000 |
| 20:3862253:GA:G | acceptor_gain | 1.0000 |
| 20:3862409:AGCAG:A | donor_loss | 1.0000 |
| 20:3862410:GCAG:G | donor_gain | 1.0000 |
| 20:3862410:GCAGG:G | donor_loss | 1.0000 |
| 20:3862411:CAGG:C | donor_loss | 1.0000 |
| 20:3862412:AG:A | donor_loss | 1.0000 |
| 20:3862413:GGT:G | donor_loss | 1.0000 |
| 20:3862414:GTAT:G | donor_loss | 1.0000 |
| 20:3862415:T:A | donor_loss | 1.0000 |
| 20:3866021:G:GT | donor_gain | 1.0000 |
| 20:3847391:GGCT:G | donor_gain | 0.9900 |
| 20:3847392:GCTG:G | donor_gain | 0.9900 |
| 20:3854552:TTCCA:T | acceptor_gain | 0.9900 |
| 20:3854553:TCCA:T | acceptor_gain | 0.9900 |
| 20:3854554:CCAGT:C | acceptor_gain | 0.9900 |
AlphaMissense
3460 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:3857719:T:A | W68R | 0.998 |
| 20:3857719:T:C | W68R | 0.998 |
| 20:3857721:G:C | W68C | 0.997 |
| 20:3857721:G:T | W68C | 0.997 |
| 20:3857702:T:A | L62H | 0.994 |
| 20:3854679:T:C | F19L | 0.993 |
| 20:3854680:T:C | F19S | 0.993 |
| 20:3854681:T:A | F19L | 0.993 |
| 20:3854681:T:G | F19L | 0.993 |
| 20:3857690:T:C | L58P | 0.993 |
| 20:3857702:T:C | L62P | 0.993 |
| 20:3854659:T:A | I12N | 0.992 |
| 20:3854725:T:C | L34P | 0.992 |
| 20:3857744:T:C | L76P | 0.992 |
| 20:3854716:T:C | L31P | 0.991 |
| 20:3857693:T:C | F59S | 0.991 |
| 20:3854659:T:C | I12T | 0.990 |
| 20:3854725:T:A | L34H | 0.990 |
| 20:3857642:T:C | L42P | 0.990 |
| 20:3854659:T:G | I12S | 0.989 |
| 20:3857647:G:C | A44P | 0.988 |
| 20:3857711:G:C | R65P | 0.988 |
| 20:3857741:C:A | A75E | 0.988 |
| 20:3857720:G:C | W68S | 0.987 |
| 20:3854721:T:C | C33R | 0.986 |
| 20:3854737:A:T | D38V | 0.985 |
| 20:3854740:A:C | Q39P | 0.985 |
| 20:3857645:G:C | R43P | 0.985 |
| 20:3857666:G:A | G50E | 0.985 |
| 20:3857744:T:A | L76Q | 0.985 |
dbSNP variants (sampled 300 via entrez): RS1000067003 (20:3850074 C>A,G,T), RS1000074642 (20:3864888 G>C), RS1000193857 (20:3875809 C>T), RS1000341650 (20:3859316 G>A,C), RS1000416889 (20:3870271 C>T), RS1000443815 (20:3849229 G>A,T), RS1000480251 (20:3847713 C>G,T), RS1000580658 (20:3847944 G>A), RS1000761648 (20:3874617 G>T), RS1000937406 (20:3858446 G>A,C), RS1000972331 (20:3869235 C>T), RS1001069544 (20:3863281 C>G), RS1001209969 (20:3871042 G>A), RS1001336928 (20:3853520 A>G), RS1001339662 (20:3845320 A>C)
Disease associations
OMIM: gene MIM:609676 | disease phenotypes: MIM:234200
GenCC curated gene-disease
Mondo (1): pantothenate kinase-associated neurodegeneration (MONDO:0009319)
Orphanet (1): Pantothenate kinase-associated neurodegeneration (Orphanet:157850)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000576_3 | Asthma | 8.000000e-06 |
| GCST90002401_308 | Platelet distribution width | 2.000000e-14 |
| GCST90002401_309 | Platelet distribution width | 8.000000e-10 |
| GCST90002401_310 | Platelet distribution width | 5.000000e-16 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007984 | platelet component distribution width |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006211 | Pantothenate Kinase-Associated Neurodegeneration | C10.228.140.079.800; C10.228.140.744.320; C10.228.662.575; C10.574.500.700; C16.320.400.650 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523363 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.41 | Kd | 392.7 | nM | CHEMBL5653589 |
| 6.41 | ED50 | 393.9 | nM | CHEMBL5653589 |
| 5.28 | Kd | 5243 | nM | CHEMBL3752910 |
| 5.28 | ED50 | 5259 | nM | CHEMBL3752910 |
PubChem BioAssay actives
2 with measured affinity, of 6 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148725: Binding affinity to human MAVS incubated for 45 mins by Kinobead based pull down assay | kd | 0.3927 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148725: Binding affinity to human MAVS incubated for 45 mins by Kinobead based pull down assay | kd | 5.2434 | uM |
CTD chemical–gene interactions
48 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases methylation | 5 |
| sodium arsenite | increases expression, increases abundance | 2 |
| bisphenol S | affects expression, increases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Arsenic | affects methylation, increases abundance, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| ginger extract | affects cotreatment, affects expression, increases abundance | 1 |
| dicrotophos | increases expression | 1 |
| beauvericin | increases expression | 1 |
| bisphenol A | increases abundance, affects cotreatment, affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| ochratoxin A | decreases expression | 1 |
| phenyl-N-tert-butylnitrone | decreases reaction, increases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| lipopolysaccharide, Escherichia coli O111 B4 | increases expression, affects reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Caffeine | affects phosphorylation | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4341445 | Binding | Binding affinity to MAVS in human A549 cells lysates grown on SILAC media at 10 uM incubated for 1 hr by LC-MS/MS analysis relative to untreated control | Profiling withanolide A for therapeutic targets in neurodegenerative diseases. — Bioorg Med Chem |
Cellosaurus cell lines
10 cell lines: 8 cancer cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A7ZM | A549-Dual KO-MAVS | Cancer cell line | Male |
| CVCL_A8BA | THP1-Dual KO-MAVS | Cancer cell line | Male |
| CVCL_B9MF | Abcam A-549 MAVS KO | Cancer cell line | Male |
| CVCL_D7GX | Ubigene HEK293T MAVS KO | Transformed cell line | Female |
| CVCL_D7UU | Ubigene A-549 MAVS KO | Cancer cell line | Male |
| CVCL_D9JX | Ubigene HEK293 MAVS KO | Transformed cell line | Female |
| CVCL_F1M6 | HyCyte A-549 KO-hMAVS | Cancer cell line | Male |
| CVCL_JA65 | NtG20.i7 | Cancer cell line | Male |
| CVCL_SX36 | HAP1 MAVS (-) 1 | Cancer cell line | Male |
| CVCL_SX37 | HAP1 MAVS (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
8 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01741532 | PHASE3 | COMPLETED | Efficacy and Safety Study of Deferiprone in Patients With Pantothenate Kinase-associated Neurodegeneration (PKAN) |
| NCT02174848 | PHASE3 | COMPLETED | Long-term Deferiprone Treatment in Patients With Pantothenate Kinase-Associated Neurodegeneration |
| NCT03041116 | PHASE3 | TERMINATED | Efficacy and Safety Study of Fosmetpantotenate (RE-024) in PKAN Participants |
| NCT01838018 | Not specified | COMPLETED | Brain Perfusion in Pantothenate Kinase-associated Neurodegeneration (PKAN) |
| NCT02635841 | Not specified | NO_LONGER_AVAILABLE | Compassionate Use of Deferiprone in Patients With PKAN |
| NCT03333200 | Not specified | RECRUITING | Longitudinal Study of Neurodegenerative Disorders |
| NCT04182763 | Not specified | COMPLETED | CoA-Z in Pantothenate Kinase-associated Neurodegeneration (PKAN) |
| NCT05522374 | Not specified | RECRUITING | TIRCON International NBIA Registry |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): pantothenate kinase-associated neurodegeneration