MBL2

gene
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Also known as COLEC1MBP-CMBP1MBP

Summary

MBL2 (mannose binding lectin 2, HGNC:6922) is a protein-coding gene on chromosome 10q21.1, encoding Mannose-binding protein C (P11226). Calcium-dependent lectin, which acts as a pattern recognition receptor that initiates the lectin pathway of the complement system, a cascade of proteins that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the adaptive immune system.

This gene encodes the soluble mannose-binding lectin or mannose-binding protein found in serum. The protein encoded belongs to the collectin family and is an important element in the innate immune system. The protein recognizes and binds to mannose and N-acetylglucosamine on many microorganisms, including bacteria, yeast, and viruses including influenza virus, HIV and SARS-CoV. This binding activates the classical complement pathway. Deficiencies of this gene have been associated with susceptibility to autoimmune and infectious diseases.

Source: NCBI Gene 4153 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): mannose-binding lectin deficiency (Limited, GenCC)
  • GWAS associations: 38
  • Clinical variants (ClinVar): 130 total — 1 pathogenic
  • Phenotypes (HPO): 7
  • Druggable target: yes
  • MANE Select transcript: NM_001378373

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:6922
Approved symbolMBL2
Namemannose binding lectin 2
Location10q21.1
Locus typegene with protein product
StatusApproved
AliasesCOLEC1, MBP-C, MBP1, MBP
Ensembl geneENSG00000165471
Ensembl biotypeprotein_coding
OMIM154545
Entrez4153

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 protein_coding

ENST00000373968, ENST00000674931, ENST00000675947, ENST00000877442, ENST00000877443

RefSeq mRNA: 3 — MANE Select: NM_001378373 NM_000242, NM_001378373, NM_001378374

CCDS: CCDS7247

Canonical transcript exons

ENST00000674931 — 5 exons

ExonStartEnd
ENSE000014620265276538052768510
ENSE000035329485277067052770786
ENSE000035525965276924752769315
ENSE000039003435277144952771644
ENSE000039004865277273752772784

Expression profiles

Bgee: expression breadth broad, 18 present calls, max score 95.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.8352 / max 266.7529, expressed in 20 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
1094020.368710
1094030.239212
1094000.119111
1093990.100312
1094010.00795

Top tissues by expression

284 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right lobe of liverUBERON:000111495.84gold quality
liverUBERON:000210795.84gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047385.53silver quality
buccal mucosa cellCL:000233679.12gold quality
adrenal tissueUBERON:001830369.89gold quality
cerebellar vermisUBERON:000472052.38gold quality
Brodmann (1909) area 10UBERON:001354151.10silver quality
frontal poleUBERON:000279550.41gold quality
quadriceps femorisUBERON:000137750.32gold quality
middle frontal gyrusUBERON:000270250.30gold quality
paraflocculusUBERON:000535150.18gold quality
thymusUBERON:000237050.11gold quality
vastus lateralisUBERON:000137949.45gold quality
Brodmann (1909) area 46UBERON:000648349.30gold quality
blood vessel layerUBERON:000479749.29gold quality
cervix squamous epitheliumUBERON:000692249.20gold quality
hair follicleUBERON:000207349.18gold quality
olfactory bulbUBERON:000226448.92gold quality
choroid plexus epitheliumUBERON:000391148.89gold quality
myocardiumUBERON:000234948.87gold quality
type B pancreatic cellCL:000016948.83gold quality
epithelial cell of pancreasCL:000008348.57gold quality
cardiac muscle of right atriumUBERON:000337948.55gold quality
CA1 field of hippocampusUBERON:000388148.50gold quality
deltoidUBERON:000147648.26gold quality
left ventricle myocardiumUBERON:000656648.24gold quality
oviduct epitheliumUBERON:000480448.21gold quality
orbitofrontal cortexUBERON:000416748.20gold quality
upper arm skinUBERON:000426348.06gold quality
cervix epitheliumUBERON:000480148.04gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes3.61

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ENO1, MYC, PPARA

miRNA regulators (miRDB)

145 targeting MBL2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-8485100.0077.574731
HSA-MIR-656-3P100.0072.152788
HSA-MIR-3924100.0072.092394
HSA-MIR-6867-5P100.0082.213464
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-126-5P100.0072.713180
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-118499.9968.191458
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-511-3P99.9968.851467
HSA-MIR-4789-3P99.9970.752484
HSA-MIR-477599.9875.006394
HSA-MIR-1213699.9872.815713
HSA-MIR-373-5P99.9875.364753
HSA-MIR-616-5P99.9875.584775
HSA-MIR-548P99.9872.253784
HSA-MIR-499A-5P99.9870.791323
HSA-MIR-485-3P99.9870.681585
HSA-MIR-539-3P99.9870.741616
HSA-MIR-806899.9873.852376
HSA-MIR-314899.9775.066478
HSA-MIR-3688-3P99.9772.022834
HSA-MIR-6793-5P99.9765.95758
HSA-MIR-365899.9673.874379
HSA-MIR-1468-3P99.9672.743797
HSA-MIR-4666A-3P99.9671.713434
HSA-MIR-211099.9666.681930
HSA-MIR-548AA99.9670.643753
HSA-MIR-548AP-3P99.9670.643753
HSA-MIR-548T-3P99.9670.643753

Literature-anchored findings (GeneRIF, showing 40)

  • MBL mutants show enhanced susceptibility to proteolysis by matrix metalloproteinases (PMID:11891230)
  • MBL significantly enhances the binding of C4 to Staphylococcus aureus over the course of 10 min in sera from MBL-deficient donors. (PMID:12370377)
  • Point mutations of MBL2 are associated with celiac disease. (PMID:12439623)
  • mutation of the MBL gene might influence the clinical outcome of HBV infection in Vietnamese patients (PMID:12517417)
  • study shows that specific alterations of the N-linked carbohydrates on HIV gp120/gp41 can enhance MBL-mediated neutralization of virus by strengthening the interaction of HIV-1 with MBL (PMID:12560567)
  • This protein is a biological marker of disease progrsesion in HIV infection and HAART. (PMID:12640191)
  • Polymorphisms in the MBL2 gene reduce serum MBL levels in chronic obstructive pulmonary disease patients and are associated with risk of infection. (PMID:12761563)
  • Serum levels are reduced in Behcet’s disease (PMID:12918709)
  • low expression of MBL genotype XA/0 may be associated with protection abainst TB whereas high-expression genotypes and gentoypes conferring MBL deficiency are not (PMID:12934195)
  • studies show that mannose-binding lectin deficiency is an inherited characteristic and may be a crucial factor in maintaining immunologic health (PMID:14582818)
  • Mutations in the collagenous region of human MBL compromise assembly of higher order oligomers, resulting in reduced ligand binding capacity and thus reduced capability to activate complement. (PMID:14764589)
  • Polymorphism within the MBL gene is not associated with presence or extent of erosions by 5 years in patients with rheumatoid arthritis or inflammatory polyarthritis. (PMID:14994386)
  • The protective effect of the B allele of the MBL gene against tuberculosis was found in African Americans but not other ethnicities. (PMID:15061663)
  • mannose-binding lectin-2 exon 1 polymorphisms with low serum levels of functional MBL protein are associated with a greatly increased risk of developing systemic inflammatory response syndrome (SIRS. (PMID:15127191)
  • MBL genotype modulates arterial stiffness, an important cardiovascular risk factor, in children after Kawasaki disease (PMID:15295097)
  • MBL interacts with non-LPS components of N. meningitidis and modulates the cytokine response (PMID:15381182)
  • pregnant women bearing the G54D MBL allele have a greater risk for developing gestational diabetes mellitus and having heavier infants (PMID:15472209)
  • review of role of mannose binding lectin in the innate immune system via interaction with HIV gp120 (PMID:15488604)
  • MBL2 variants, responsible for lower MBL levels, are associated with celiac disease and higher risk of developing autoimmune diseases (PMID:15645196)
  • the polypeptide dimer is the basic unit in the oligomerization of mannan-binding lectin. (PMID:15653690)
  • A previously unrecognized feature of mannose binding lectin is the presence of a highly stable collagen triple-helix adjacent to a much less stable triple helix, which may have imperfect hydrogen bonding making little enthalpic contributions. (PMID:15697204)
  • MBL2 contains 12 disulfide-linked chains and is tetrameric in structure; the oligomerization state of MBL has a direct effect on its carbohydrate-binding properties, but no influence on the interaction with MBL-associated serine proteases (MASPs). (PMID:15728497)
  • Mannose-binding lectin polymorphism associated with increased prevalence of bacterial infection in critically ill adults (PMID:15753758)
  • Mannose-binding lectin alleles are associated with restenosis in patients undergoing carotid eversion endarterectomy. (PMID:15790942)
  • The role of mannose-binding lectin (MBL2) in natural immunity to SARS-CoV infection is reported. (PMID:15838797)
  • increased blood levels in asthmatic children; findings indicate that mbl may be implicated in the pathogenesis of asthma by contributing to airway inflammation or by increasing the risk of developing asthma (PMID:15853952)
  • Complement activation initiated by MBL may be involved in the pathogenesis of diabetic microvascular complications. (PMID:15855341)
  • Higher MBL levels seem to be associated with a more severe form of rejection leading to treatment failure and graft loss (PMID:15888042)
  • The CGT52TGT point mutation of MBL gene does not affect the secretion of its product, but a Cys introduced by the mutation could form another disulfide bond which may disrupt the structure of MBL molecule as well as its function. (PMID:15989776)
  • functional serum mannose-binding lectin (MBL) activating capacity of five isolates of Moraxella catarrhalis obtained from children who suffered recurrent acute otitis media episodes (PMID:16006058)
  • Mannose-binding lectin (MBL) inhibits peptidoglycan (PGN)-mediated tumor necrosis factor-alpha production and enhances secretion of chemokines by macrophages, hence MBL may down-regulate PGN-mediated inflammation while enhancing phagocyte recruitment (PMID:16034120)
  • Significantly earlier age at onset of Pseudomonas aeruginosa colonisation was found in CF patients with at least one MBL2 variant. (PMID:16046196)
  • The present study reveals native, oligomeric forms of human MBL in plasma from healthy blood donors of differing genotypes and correlates the relative abundance of observed molecular weight species with mannan binding activity and C4 deposition in vitro. (PMID:16099048)
  • binds to Ebola and Marburg envelope glycoproteins during infection in humans and inhibits ENV interaction with DC-SIGN (PMID:16099912)
  • On average, high MASP-1 correlates with low MASP-2 and vice-versa, and confirms the hypothesis that native MBL-MASP complexes on average do not have fixed MBL-(MASP-1)-(MASP-2) stoichiometry. (PMID:16102832)
  • Low-producing MBL2 variants and low MBL levels are associated with increased susceptibility to and severity of a variety of infective illnesses (PMID:16105157)
  • mbl2 gene expression may be relevant in local immune defense, particularly in restricted areas of the gastrointestinal and reproductive tracts. (PMID:16112196)
  • Mannose binding lectin (MBL) is a calcium dependent C-type lectin that acts as an important first line defence mechanism against infection by its capability to activate the complement system and enhance phagocytosis. (PMID:16115848)
  • MBL gene mutations may not be a main factor of the pathogenesis of chronic rheumatic heart disease, but MBL deficiency may facilitate the development of CRHD in younger people. (PMID:16200716)
  • additional 5’ variants as well as markers of distinct 3’ haplotype blocks in MBL2 may contribute to circulating mannose-binding protein levels (PMID:16208516)

Cross-species orthologs

7 orthologs

OrganismSymbolGene ID
danio_reriocol7a1ENSDARG00000021720
danio_reriohbl4ENSDARG00000054202
danio_reriombl2ENSDARG00000068220
danio_reriohbl1ENSDARG00000068221
danio_reriohbl2ENSDARG00000094681
mus_musculusMbl2ENSMUSG00000024863
rattus_norvegicusAABR07006691.1ENSRNOG00000011637

Protein

Protein identifiers

Mannose-binding protein CP11226 (reviewed: P11226)

Alternative names: Collectin-1, MBP1, Mannan-binding protein, Mannose-binding lectin

All UniProt accessions (1): P11226

UniProt curated annotations — full annotation on UniProt →

Function. Calcium-dependent lectin, which acts as a pattern recognition receptor that initiates the lectin pathway of the complement system, a cascade of proteins that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the adaptive immune system. Specifically recognizes and binds the mannose moiety of carbohydrates on the pathogen surface, activating the MASP1 serine protease and initiating the proteolytic cascade of the lectin complement pathway. Upon SARS coronavirus-2/SARS-CoV-2 infection, activates the complement lectin pathway which leads to the inhibition SARS-CoV-2 infection and a reduction of the induced inflammatory response. May bind DNA.

Subunit / interactions. Oligomeric complex of 3 or more homotrimers. Interacts with MASP1 and MASP2. Interacts with MEP1A and MEP1B and may inhibit their catalytic activity. Interacts with CR1 (via Sushi 24 and Sushi 25 domains). (Microbial infection) Interacts with SARS coronavirus-2/SARS-CoV-2 Spike glycoprotein homotrimer; the interaction is calcium-dependent and modulated by Spike glycoprotein glycosylation state.

Subcellular location. Secreted. Cell surface.

Tissue specificity. Plasma protein produced mainly in the liver.

Domain organisation. The coiled-coil domain mediates trimerization.

Polymorphism. Genetic variations in MBL2 influence susceptibility to hepatitis B virus (HBV) infection [MIM:610424]. Genetic variations in MBL2 may influence susceptibility to severe COVID-19 disease caused by SARS-CoV-2 virus infection. Genetic variations in MBL2 are responsible for mannose-binding protein deficiency [MIM:614372]. This condition is defined as MBL2 protein level of less than 100 ng/ml, is present in about 5% of people of European descent and in about 10% of sub-Saharan Africans. Most MBL2-deficient adults appear healthy, but low levels of MBL2 are associated with increased risk of infection in toddlers, in cancer patients undergoing chemotherapy, and in organ-transplant patients receiving immunosuppressive drugs, particularly recipients of liver transplants. There is an association between low levels of MBL2 and a defect of opsonization which results in susceptibility to frequent and chronic infections. Functional MBL2 deficiency may be associated with protection against tuberculosis caused by Mycobacterium africanum but not by Mycobacterium tuberculosis, as observed in studies on Ghanaian patients with pulmonary tuberculosis.

RefSeq proteins (3): NP_000233, NP_001365302, NP_001365303 (=MANE)

Domains & families (InterPro)

IDNameType
IPR001304C-type_lectin-likeDomain
IPR008160CollagenRepeat
IPR016186C-type_lectin-like/link_sfHomologous_superfamily
IPR016187CTDL_foldHomologous_superfamily
IPR018378C-type_lectin_CSConserved_site
IPR033990Collectin_CTLDDomain
IPR051077Ca-dependent_lectinFamily

Pfam: PF00059, PF01391

UniProt features (50 total): binding site 18, strand 7, modified residue 5, sequence variant 5, helix 4, compositionally biased region 3, domain 2, disulfide bond 2, signal peptide 1, chain 1, region of interest 1, coiled-coil region 1

Structure

Experimental structures (PDB)

1 structures.

PDBMethodResolution (Å)
1HUPX-RAY DIFFRACTION2.5

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P11226-F182.590.58

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (18): 192; 209; 210; 212; 212; 214; 214; 215; 220; 220; 220; 221

Post-translational modifications (5): 47, 73, 79, 82, 88

Disulfide bonds (2): 155–244, 222–236

Function

Pathways and Gene Ontology

Reactome pathways

14 pathways

IDPathway
R-HSA-166662Lectin pathway of complement activation
R-HSA-166663Initial triggering of complement
R-HSA-9705671SARS-CoV-2 activates/modulates innate and adaptive immune responses
R-HSA-9920588Dengue virus activates/modulates innate and adaptive immune responses
R-HSA-1643685Disease
R-HSA-166658Complement cascade
R-HSA-166786Creation of C4 and C2 activators
R-HSA-168249Innate Immune System
R-HSA-168256Immune System
R-HSA-5663205Infectious disease
R-HSA-9679506SARS-CoV Infections
R-HSA-9694516SARS-CoV-2 Infection
R-HSA-9705683SARS-CoV-2-host interactions
R-HSA-9824446Viral Infection Pathways

MSigDB gene sets: 569 (showing top): GSE45365_NK_CELL_VS_CD8_TCELL_DN, SHEPARD_BMYB_MORPHOLINO_UP, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_INFLAMMATORY_RESPONSE, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOCC_COLLAGEN_TRIMER, REACTOME_CREATION_OF_C4_AND_C2_ACTIVATORS, GOBP_NEGATIVE_REGULATION_OF_VIRAL_PROCESS, GOCC_CELL_SURFACE, chr10q21, GOBP_VESICLE_MEDIATED_TRANSPORT, LEE_LIVER_CANCER_CIPROFIBRATE_DN, CAGCTG_AP4_Q5, GOBP_LEUKOCYTE_MEDIATED_IMMUNITY

GO Biological Process (22): complement activation, lectin pathway (GO:0001867), cell surface pattern recognition receptor signaling pathway (GO:0002752), proteolysis (GO:0006508), acute-phase response (GO:0006953), complement activation, classical pathway (GO:0006958), response to oxidative stress (GO:0006979), opsonization (GO:0008228), defense response to bacterium (GO:0042742), surfactant homeostasis (GO:0043129), innate immune response (GO:0045087), negative regulation of viral process (GO:0048525), positive regulation of phagocytosis (GO:0050766), defense response to Gram-positive bacterium (GO:0050830), obsolete killing by host of symbiont cells (GO:0051873), antiviral innate immune response (GO:0140374), positive regulation of opsonization (GO:1903028), activation of membrane attack complex (GO:0001905), immune system process (GO:0002376), complement activation (GO:0006956), zymogen activation (GO:0031638), killing of cells of another organism (GO:0031640), protein maturation (GO:0051604)

GO Molecular Function (7): signaling receptor binding (GO:0005102), D-mannose binding (GO:0005537), pattern recognition receptor activity (GO:0038187), identical protein binding (GO:0042802), calcium-dependent protein binding (GO:0048306), protein binding (GO:0005515), carbohydrate binding (GO:0030246)

GO Cellular Component (8): extracellular region (GO:0005576), collagen trimer (GO:0005581), obsolete extracellular space (GO:0005615), multivesicular body (GO:0005771), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), symbiont cell surface (GO:0106139), serine-type endopeptidase complex (GO:1905370)

Reactome top-level categories

Rollup of top-12 pathways:

CategoryPathways
Creation of C4 and C2 activators1
Complement cascade1
SARS-CoV-2-host interactions1
Dengue Virus-Host Interactions1
Innate Immune System1
Initial triggering of complement1
Immune System1
Disease1
Viral Infection Pathways1
SARS-CoV Infections1
SARS-CoV-2 Infection1
Infectious disease1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
complement activation3
protein binding3
innate immune response2
immune effector process2
binding2
cellular anatomical structure2
innate immune response activating cell surface receptor signaling pathway1
pattern recognition receptor signaling pathway1
protein metabolic process1
acute inflammatory response1
humoral immune response mediated by circulating immunoglobulin1
response to stress1
phagocytosis, recognition1
defense response1
response to bacterium1
multicellular organismal-level chemical homeostasis1
immune response1
defense response to symbiont1
viral process1
negative regulation of biological process1
regulation of viral process1
phagocytosis1
positive regulation of endocytosis1
regulation of phagocytosis1
defense response to bacterium1
defense response to virus1
positive regulation of immune effector process1
opsonization1
positive regulation of phagocytosis1
regulation of opsonization1
biological_process1
activation of immune response1
humoral immune response1
protein activation cascade1
protein processing1
monosaccharide binding1
signaling receptor activity1
calcium ion binding1
protein-containing complex1
late endosome1

Protein interactions and networks

STRING

1560 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MBL2FCN2Q15485994
MBL2MASP2O00187994
MBL2PRSS2P07478991
MBL2F8W876F8W876974
MBL2CALRP27797974
MBL2FCN3O75636965
MBL2PTX3P26022965
MBL2COLEC11Q9BWP8874
MBL2FCN1O00602863
MBL2C3P01024851
MBL2CD209Q9NNX6834
MBL2CRPP02741833
MBL2C1RP00736824
MBL2C1SP09871823
MBL2C4AP01028810

IntAct

133 interactions, top by confidence:

ABTypeScore
MBL2psi-mi:“MI:0914”(association)0.940
MBL2psi-mi:“MI:0915”(physical association)0.940
MBL2psi-mi:“MI:0407”(direct interaction)0.940
MASP1MBL2psi-mi:“MI:0915”(physical association)0.920
MBL2MASP1psi-mi:“MI:0407”(direct interaction)0.920
MASP1MBL2psi-mi:“MI:0407”(direct interaction)0.920
MBL2MBL2psi-mi:“MI:0407”(direct interaction)0.870

BioGRID (33): TRAPPC2 (Affinity Capture-Western), MBL2 (Affinity Capture-Western), UBQLN2 (Two-hybrid), CALR (Reconstituted Complex), SLTM (Proximity Label-MS), MBL2 (Affinity Capture-Western), MASP2 (Affinity Capture-Western), MASP1 (Affinity Capture-Western), MBL2 (Reconstituted Complex), TRMU (Affinity Capture-MS), MBL2 (Affinity Capture-MS), PSMA1 (Affinity Capture-MS), PSMA2 (Affinity Capture-MS), PSMA3 (Affinity Capture-MS), PSMA6 (Affinity Capture-MS)

ESM2 similar proteins: B1A4N2, B1A4P2, B1A4P8, B1A4Q3, B1A4Q5, C0STK6, O02659, P06908, P08427, P08661, P11226, P12842, P19999, P23805, P35242, P35247, P35248, P39039, P41317, P42916, P49874, P50403, P50404, Q1PBC5, Q2LK95, Q5M8X6, Q5U9S1, Q66S37, Q66S41, Q66S45, Q66S50, Q66S54, Q66S58, Q66S60, Q66S61, Q66S62, Q66S63, Q66S64, Q66S65, Q6RXL1

Diamond homologs: A5PMY6, A6QP79, D3ZWT9, O14594, P02706, P02707, P05451, P06734, P07306, P07307, P07897, P07898, P08290, P08661, P10716, P10758, P11226, P13608, P13611, P16112, P19999, P20693, P22897, P24721, P34927, P41317, P43137, P48304, P49300, P49301, P55066, P55067, P60883, P70194, P81282, P82596, P86854, Q28343, Q28670, Q29011

SIGNOR signaling

4 interactions.

AEffectBMechanism
MBL2“down-regulates activity”Sbinding
MBL2“up-regulates activity”MASP1binding
MBL2“up-regulates activity”MASP2binding
PAMPs“up-regulates activity”MBL2binding

Disease & clinical

Clinical variants and AI predictions

ClinVar

130 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance101
Likely benign17
Benign0

Top pathogenic / likely-pathogenic (1)

Variant IDHGVSClassification
3063125GRCh37/hg19 10q21.1(chr10:54459920-56080457)x1Pathogenic

SpliceAI

1691 predictions. Top by Δscore:

VariantEffectΔscore
10:52769246:CA:Cdonor_gain1.0000
10:52771444:CGTA:Cdonor_loss1.0000
10:52771445:GTACC:Gdonor_loss1.0000
10:52771446:TA:Tdonor_loss1.0000
18:76984815:C:CAdonor_gain1.0000
18:76989954:A:ACdonor_gain1.0000
18:76989955:C:CCdonor_gain1.0000
18:77012741:C:CTacceptor_gain1.0000
10:52768509:CC:Cacceptor_gain0.9900
10:52768509:CCCTA:Cacceptor_loss0.9900
10:52768510:CC:Cacceptor_gain0.9900
10:52768510:CCTA:Cacceptor_loss0.9900
10:52768511:C:CCacceptor_gain0.9900
10:52768511:CTA:Cacceptor_loss0.9900
10:52768518:G:Cacceptor_gain0.9900
10:52769245:A:ACdonor_gain0.9900
10:52769246:C:CCdonor_gain0.9900
10:52769246:CACT:Cdonor_gain0.9900
10:52769246:CACTT:Cdonor_gain0.9900
10:52770787:C:CCacceptor_gain0.9900
10:52770787:C:Gacceptor_loss0.9900
10:52770788:T:Aacceptor_loss0.9900
10:52771466:C:CAdonor_gain0.9900
18:76980470:CC:Cacceptor_gain0.9900
18:76980471:CC:Cacceptor_gain0.9900
18:76984774:CCAG:Cdonor_gain0.9900
18:76989955:CA:Cdonor_gain0.9900
18:77012746:C:CTacceptor_gain0.9900
18:77012747:A:Tacceptor_gain0.9900
18:77016828:TCA:Tdonor_loss0.9900

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000067088 (10:52773511 G>A), RS1000134067 (10:52772210 C>A,T), RS1000167296 (10:52768037 T>C), RS1000247371 (10:52770965 G>A), RS1000281538 (10:52767710 G>A), RS1000418456 (10:52773279 G>C), RS1001510824 (10:52765626 T>C), RS1001543680 (10:52765336 A>T), RS1001692978 (10:52774637 C>G,T), RS1002181781 (10:52770446 G>A), RS1002518563 (10:52771692 A>G), RS1003082932 (10:52766042 G>A), RS1003214298 (10:52766707 A>C), RS1004307319 (10:52767452 G>A), RS1004338491 (10:52767144 T>C)

Disease associations

OMIM: gene MIM:154545 | disease phenotypes: MIM:614372, MIM:219700

GenCC curated gene-disease

DiseaseClassificationInheritance
mannose-binding lectin deficiencyLimitedAutosomal dominant

Mondo (2): mannose-binding lectin deficiency (MONDO:0013714), cystic fibrosis (MONDO:0009061)

Orphanet (1): Cystic fibrosis (Orphanet:586)

HPO phenotypes

7 total (7 of 7 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0001508Failure to thrive
HP:0001581Recurrent skin infections
HP:0002742Recurrent Klebsiella infections
HP:0005353Recurrent herpes
HP:0005381Recurrent meningococcal disease
HP:0031699Disseminated cryptosporidium infection

GWAS associations

38 associations (top):

StudyTraitp-value
GCST001482_4Lumbar spine bone mineral density2.000000e-12
GCST001814_17Age-related macular degeneration3.000000e-06
GCST001814_28Age-related macular degeneration2.000000e-06
GCST002333_5Bone properties (heel)5.000000e-15
GCST002335_5Bone properties (heel)1.000000e-08
GCST002945_14Emphysema imaging phenotypes2.000000e-07
GCST003989_2Chin dimples2.000000e-08
GCST003996_44Monobrow4.000000e-15
GCST004350_17Bone ultrasound measurement (velocity of sound)4.000000e-07
GCST004351_9Bone ultrasound measurement (broadband ultrasound attenuation)4.000000e-07
GCST005790_18Rosacea symptom severity5.000000e-06
GCST005795_29Femoral neck bone mineral density1.000000e-06
GCST005796_16Lumbar spine bone mineral density2.000000e-08
GCST006288_106Heel bone mineral density2.000000e-24
GCST006288_107Heel bone mineral density2.000000e-62
GCST006288_108Heel bone mineral density2.000000e-12
GCST006288_491Heel bone mineral density4.000000e-11
GCST006288_632Heel bone mineral density7.000000e-27
GCST006288_633Heel bone mineral density9.000000e-67
GCST006288_634Heel bone mineral density6.000000e-138
GCST006288_635Heel bone mineral density5.000000e-19
GCST006288_717Heel bone mineral density1.000000e-40
GCST006288_718Heel bone mineral density1.000000e-76
GCST006288_719Heel bone mineral density2.000000e-08
GCST006288_766Heel bone mineral density3.000000e-15
GCST006423_10Fracture1.000000e-32
GCST006585_404Blood protein levels0.000000e+00
GCST006979_577Heel bone mineral density7.000000e-47
GCST006979_578Heel bone mineral density3.000000e-110
GCST006979_579Heel bone mineral density4.000000e-41

EFO canonical traits (10, from GWAS)

EFO IDTrait name
EFO:0005654velocity of sound measurement
EFO:0004514bone quantitative ultrasound measurement
EFO:0007626emphysema imaging measurement
EFO:0007906synophrys measurement
EFO:0009180rosacea severity measurement
EFO:0007785femoral neck bone mineral density
EFO:0007701spine bone mineral density
EFO:0009270heel bone mineral density
EFO:0009771methionine measurement
EFO:0005001phenylalanine measurement

MeSH disease descriptors (2)

DescriptorNameTree numbers
D003550Cystic FibrosisC06.689.202; C08.381.187; C16.320.190; C16.614.213
C563602Mannose-Binding Protein Deficiency (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL1795113 (SINGLE PROTEIN)

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

48 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneaffects methylation, decreases expression, increases expression, increases methylation6
Tetrachlorodibenzodioxinaffects cotreatment, increases expression, affects expression6
Cyclosporineaffects cotreatment, affects expression, decreases expression4
Aflatoxin B1decreases expression, decreases methylation, affects expression3
sodium arseniteaffects expression, decreases expression2
perfluorooctane sulfonic acidincreases expression2
2,4,6-tribromophenoldecreases expression1
lasiocarpinedecreases expression1
methyleugenoldecreases expression1
pirinixic acidaffects binding, increases activity, increases expression1
decabromobiphenyl etherincreases expression1
9,10-dihydro-9,10-dihydroxybenzo(a)pyreneincreases expression1
tetrabromobisphenol Aincreases expression1
3,4,5,3’,4’-pentachlorobiphenylincreases expression1
perfluorooctanoic acidincreases expression1
cerous chloridedecreases expression, affects cotreatment1
lanthanum chlorideaffects cotreatment, decreases expression1
benazol Paffects expression1
perfluorodecanoic aciddecreases expression1
CGP 52608increases reaction, affects binding1
perfluoro-n-heptanoic acidincreases expression1
perfluoro-n-nonanoic aciddecreases expression1
perfluorohexanesulfonic acidincreases expression1
perfluorohexanoic acidincreases expression1
2,2’,4,4’-tetrabromodiphenyl etherdecreases expression1
pentabrominated diphenyl ether 100decreases expression1
hexabrominated diphenyl ether 153increases expression1
perfluorododecanoic aciddecreases expression1
Bortezomibincreases response to substance1
Rosiglitazoneincreases expression1

ChEMBL screening assays

3 unique, capped per target: 3 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1805068BindingBinding affinity to MBP at 1 mMFimH antagonists for the oral treatment of urinary tract infections: from design and synthesis to in vitro and in vivo evaluation. — J Med Chem

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00157690PHASE4COMPLETEDStudy of Alendronate to Prevent and Treat Osteoporosis in Cystic Fibrosis Patients
NCT00208078PHASE4TERMINATEDEffect of Non-Invasive Ventilation in Cystic Fibrosis Patient With Chronic Respiratory Failure.
NCT00244270PHASE4COMPLETEDCystic Fibrosis and Totally Implantable Vascular Access Devices
NCT00333385PHASE4TERMINATEDContinuous Versus Short Infusions of Ceftazidime in Cystic Fibrosis
NCT00411736PHASE4COMPLETEDScandinavian Cystic Fibrosis Azithromycin Study
NCT00418470PHASE4TERMINATEDProlonging the Duration of Peripheral Venous Catheters in Cystic Fibrosis People
NCT00431964PHASE4COMPLETEDEffect of Azithromycin on Lung Function in 6-18 Year-olds With Cystic Fibrosis (CF) Not Infected With P. Aeruginosa
NCT00434278PHASE4TERMINATEDA Trial of Pulmozyme Withdrawal on Exercise Tolerance in Cystic Fibrosis Subjects With Severe Lung Disease (TOPIC)
NCT00483769PHASE4COMPLETEDOne Year Glargine Treatment in CFRD Children and Adolescents
NCT00528190PHASE4COMPLETEDTreatment of Aspergillus Fumigatus (a Fungal Infection) in Patients With Cystic Fibrosis
NCT00557089PHASE4COMPLETEDThe Effect of rhDNase on Ventilation Inhomogeneity in Patients With Cystic Fibrosis
NCT00572975PHASE4COMPLETEDMalabsorption Blood Test:Toward a Novel Approach to Quantify Steatorrhea
NCT00680316PHASE4TERMINATEDA Study of Pulmozyme® (Dornase Alpha) in 3- to 5-Year-Old Patients With Cystic Fibrosis
NCT00685035PHASE4COMPLETEDComparison of Airway Clearance Therapy in Cystic Fibrosis Using the Same VEST Therapy Device But With Different Settings
NCT00744250PHASE4TERMINATEDIntraduodenal Aspiration Study to Assess the Bioavailability of Oral Pancrecarb® Compared to Placebo Control
NCT00787917PHASE4TERMINATEDAn Exploratory Study to Assess Multiple Doses of Omalizumab in Patients With Cystic Fibrosis Complicated by Acute Bronchopulmonary Aspergillosis (ABPA)
NCT00843817PHASE4COMPLETEDRhDNase and Biodistribution of PMN Serine Proteases in Cystic Fibrosis Sputum
NCT00890370PHASE4COMPLETEDShould Any One Airway Clearance Technique be Recommended for People With Cystic Fibrosis?
NCT00996424PHASE4TERMINATEDThe Effect of Inhaled N-Acetylcysteine Compared to Normal Saline on Sputum Rheology and Lung Function
NCT01044719PHASE4UNKNOWNDuration of Antibiotics in Infective Exacerbations of Cystic Fibrosis
NCT01100606PHASE4COMPLETEDA Study to Evaluate the Mode of Administration and Safety of EUR-1008 (APT-1008) in Infants 1 to 12 Months of Age
NCT01131507PHASE4COMPLETEDPR-018: An Open-Label, Safety Extension of Study PR-011
NCT01207245PHASE4COMPLETEDCircadian Rhythm In Tobramycin Elimination In Cystic Fibrosis
NCT01323101PHASE4COMPLETEDDoxycycline Effects on Inflammation in Cystic Fibrosis
NCT01327703PHASE4COMPLETEDControl of Steatorrhea in Participants With Cystic Fibrosis and Exocrine Pancreatic Insufficiency
NCT01377792PHASE4COMPLETEDStudy of Long-term Treatment With Hypertonic Saline in Patients With Cystic Fibrosis
NCT01400750PHASE4COMPLETEDComparison of 2 Treatment Regimens for Eradication of P Aeruginosa Infection in Children With Cystic Fibrosis
NCT01429259PHASE4COMPLETEDPopulation Pharmacokinetics of Prolonged Infusion Meropenem in Cystic Fibrosis (CF) Children
NCT01608555PHASE4COMPLETEDTobramycin 300 mg Once-a-day (o.d.) Aerosol in Adults With Cystic Fibrosis
NCT01667094PHASE4UNKNOWNA Study Comparing Continuous Infusion Antibiotics to Standard Treatment for Lung Infections in Cystic Fibrosis
NCT01694069PHASE4TERMINATEDContinuous Infusion Piperacillin-tazobactam for the Treatment of Cystic Fibrosis
NCT01702415PHASE4WITHDRAWNZoledronic Acid in Cystic Fibrosis
NCT01712334PHASE4COMPLETEDA Study of the Comparable Efficacy and Safety of Pulmozyme (Dornase Alfa) Delivered by the eRapid Nebulizer System in Patients With Cystic Fibrosis
NCT01737983PHASE4COMPLETEDEffect of Lactobacillus Reuteri in Cystic Fibrosis
NCT01844778PHASE4COMPLETEDEase of Use and Microbial Contamination of Tobramycin Inhalation Powder (TIP) Versus Nebulised Tobramycin Inhalation Solution (TIS) and Nebulised Colistimethate (COLI)
NCT01880346PHASE4COMPLETEDComparison of Absorption of Vitamin D in Cystic Fibrosis
NCT01882400PHASE4COMPLETEDAssessment of Response to Treatment of Osteoporosis With Oral Bisphosphonates in Patients With Muscular Dystrophy
NCT01937325PHASE4UNKNOWNCPET in CF Patients With One G551D Mutation Taking VX770
NCT02015663PHASE4TERMINATEDTobramycin Inhalation Powder (TIP) Administered Once Daily Continuously Versus TIP Administered BID in 28 Day on / 28 Day Off Cycles
NCT02048592PHASE4UNKNOWNImpact of Immunonutrition on the Patients With Cystic Fibrosis