MCTP1-AS3

Summary

MCTP1-AS3 (MCTP1 antisense RNA 3, HGNC:59099) is a long non-coding RNA gene on chromosome 5q15.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59099
Approved symbol	MCTP1-AS3
Name	MCTP1 antisense RNA 3
Location	5q15
Locus type	RNA, long non-coding
Status	Approved
Entrez	105379085

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000004930 (5:95230185 T>A,C), RS1000059967 (5:95185154 G>A), RS1000060487 (5:95179377 T>C), RS1000060537 (5:95142257 C>T), RS1000090273 (5:95224022 G>C), RS1000109149 (5:95154822 T>G), RS1000117833 (5:95173296 A>C,G), RS1000126622 (5:95137981 A>G), RS1000196940 (5:95221032 A>T), RS1000236525 (5:95215352 G>A), RS1000248818 (5:95257781 G>A), RS1000250905 (5:95173058 T>C,G), RS1000263172 (5:95144519 T>A), RS1000302593 (5:95257454 A>G), RS1000310541 (5:95191878 G>A)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.