MCTP1
gene geneOn this page
Also known as FLJ22344
Summary
MCTP1 (multiple C2 and transmembrane domain containing 1, HGNC:26183) is a protein-coding gene on chromosome 5q15, encoding Multiple C2 and transmembrane domain-containing protein 1 (Q6DN14). Calcium sensor which is essential for the stabilization of normal baseline neurotransmitter release and for the induction and long-term maintenance of presynaptic homeostatic plasticity.
Enables calcium ion binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; negative regulation of endocytosis; and negative regulation of response to oxidative stress. Located in membrane.
Source: NCBI Gene 79772 — RefSeq curated summary.
At a glance
- GWAS associations: 16
- Clinical variants (ClinVar): 130 total
- MANE Select transcript:
NM_024717
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26183 |
| Approved symbol | MCTP1 |
| Name | multiple C2 and transmembrane domain containing 1 |
| Location | 5q15 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22344 |
| Ensembl gene | ENSG00000175471 |
| Ensembl biotype | protein_coding |
| OMIM | 616296 |
| Entrez | 79772 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 13 protein_coding, 4 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000312216, ENST00000429576, ENST00000503301, ENST00000505078, ENST00000505208, ENST00000505465, ENST00000506568, ENST00000507214, ENST00000508509, ENST00000509850, ENST00000510732, ENST00000512425, ENST00000512568, ENST00000513695, ENST00000513857, ENST00000514040, ENST00000514780, ENST00000515393
RefSeq mRNA: 19 — MANE Select: NM_024717
NM_001002796, NM_001297777, NM_001393535, NM_001393536, NM_001393537, NM_001393538, NM_001393539, NM_001393540, NM_001393541, NM_001393542, NM_001393543, NM_001393544, NM_001393545, NM_001393546, NM_001393547, NM_001393548, NM_001393549, NM_001393550, NM_024717
CCDS: CCDS34203, CCDS47247, CCDS75275, CCDS93747
Canonical transcript exons
ENST00000515393 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001207194 | 94870417 | 94870491 |
| ENSE00001207202 | 94909251 | 94909381 |
| ENSE00001207222 | 94940084 | 94940195 |
| ENSE00001207244 | 94799013 | 94799132 |
| ENSE00001207255 | 94870872 | 94870973 |
| ENSE00001207261 | 94871315 | 94871417 |
| ENSE00001207267 | 94873139 | 94873241 |
| ENSE00001207272 | 94888879 | 94888972 |
| ENSE00001207278 | 94894649 | 94894835 |
| ENSE00001207285 | 94917896 | 94917973 |
| ENSE00001207290 | 94923962 | 94924021 |
| ENSE00001207293 | 94931953 | 94931991 |
| ENSE00001359590 | 94868333 | 94868452 |
| ENSE00001483505 | 95283856 | 95285094 |
| ENSE00002085072 | 94703690 | 94707567 |
| ENSE00003467945 | 94912806 | 94912976 |
| ENSE00003484689 | 94942348 | 94942427 |
| ENSE00003503962 | 94953219 | 94953361 |
| ENSE00003516249 | 95017367 | 95017484 |
| ENSE00003575798 | 94714777 | 94714886 |
| ENSE00003588182 | 94779110 | 94779163 |
| ENSE00003638173 | 94708512 | 94708609 |
| ENSE00003682903 | 94710818 | 94710927 |
Expression profiles
Bgee: expression breadth ubiquitous, 245 present calls, max score 96.34.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 34.4497 / max 1381.8605, expressed in 1198 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 62636 | 31.1565 | 1137 |
| 62635 | 2.0500 | 576 |
| 62633 | 0.3825 | 204 |
| 62634 | 0.3157 | 171 |
| 62643 | 0.1325 | 66 |
| 62642 | 0.1273 | 55 |
| 62637 | 0.1103 | 53 |
| 62638 | 0.0833 | 33 |
| 62641 | 0.0587 | 24 |
| 62639 | 0.0330 | 19 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 96.34 | gold quality |
| monocyte | CL:0000576 | 95.52 | gold quality |
| mononuclear cell | CL:0000842 | 95.39 | gold quality |
| calcaneal tendon | UBERON:0003701 | 94.84 | gold quality |
| leukocyte | CL:0000738 | 94.62 | gold quality |
| oocyte | CL:0000023 | 93.44 | gold quality |
| endothelial cell | CL:0000115 | 93.44 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 91.99 | gold quality |
| cortical plate | UBERON:0005343 | 91.92 | gold quality |
| sural nerve | UBERON:0015488 | 91.85 | gold quality |
| gall bladder | UBERON:0002110 | 89.35 | gold quality |
| cerebellar cortex | UBERON:0002129 | 88.67 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 88.57 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 88.56 | gold quality |
| cerebellum | UBERON:0002037 | 88.23 | gold quality |
| caudate nucleus | UBERON:0001873 | 88.17 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 87.99 | gold quality |
| prefrontal cortex | UBERON:0000451 | 87.84 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 87.75 | gold quality |
| omental fat pad | UBERON:0010414 | 87.51 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 87.47 | gold quality |
| peritoneum | UBERON:0002358 | 87.45 | gold quality |
| nucleus accumbens | UBERON:0001882 | 87.23 | gold quality |
| blood | UBERON:0000178 | 87.19 | gold quality |
| entorhinal cortex | UBERON:0002728 | 87.18 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 86.91 | gold quality |
| putamen | UBERON:0001874 | 86.82 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 86.67 | gold quality |
| colonic epithelium | UBERON:0000397 | 86.50 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 86.48 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 1306.04 |
| E-MTAB-8142 | yes | 932.96 |
| E-HCAD-25 | yes | 803.89 |
| E-CURD-112 | yes | 5.05 |
| E-GEOD-86618 | no | 552.69 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
148 targeting MCTP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
Literature-anchored findings (GeneRIF, showing 6)
- MCTPs are evolutionarily conserved C2 domain proteins that are unusual in that the C2 domains are anchored in the membrane by two closely spaced transmembrane regions and represent Ca(2+)-binding but not phospholipid-binding modules (PMID:15528213)
- MCTP1 was observed on synaptic vesicles in neuronal cell bodies and pre-synaptic axon terminals. (PMID:26195140)
- This Gene-based tests suggest evidence of association with related genes, ZEB2, RND3, MCTP1, CTBP2, and beta EEG. (PMID:28040410)
- The DNA methylation-regulated MCTP1 activates the drug-resistance of esophageal cancer cells. (PMID:33571139)
- Multiple C2 domain-containing transmembrane proteins promote lipid droplet biogenesis and growth at specialized endoplasmic reticulum subdomains. (PMID:33826368)
- MCTP1 increases the malignancy of androgen-deprived prostate cancer cells by inducing neuroendocrine differentiation and EMT. (PMID:38861615)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mctp1b | ENSDARG00000060871 |
| danio_rerio | mctp1a | ENSDARG00000076404 |
| mus_musculus | Mctp1 | ENSMUSG00000021596 |
| rattus_norvegicus | Mctp1 | ENSRNOG00000013282 |
| drosophila_melanogaster | Mctp | FBGN0034389 |
| caenorhabditis_elegans | mctp-1 | WBGENE00017063 |
Paralogs (1): MCTP2 (ENSG00000140563)
Protein
Protein identifiers
Multiple C2 and transmembrane domain-containing protein 1 — Q6DN14 (reviewed: Q6DN14)
All UniProt accessions (9): D6R8Z9, D6RA42, D6RC97, E5RJR1, Q6DN14, H0Y8M9, H0Y9S8, H0Y9Y6, H0YA70
UniProt curated annotations — full annotation on UniProt →
Function. Calcium sensor which is essential for the stabilization of normal baseline neurotransmitter release and for the induction and long-term maintenance of presynaptic homeostatic plasticity.
Subcellular location. Cytoplasmic vesicle. Secretory vesicle. Synaptic vesicle membrane. Recycling endosome. Endoplasmic reticulum membrane.
Cofactor. Binds Ca(2+) via the C2 domains in absence of phospholipids.
Similarity. Belongs to the MCTP family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6DN14-1 | 1, MCTP1L | yes |
| Q6DN14-2 | 2, MCTP1S | |
| Q6DN14-3 | 3 | |
| Q6DN14-4 | 4 | |
| Q6DN14-5 | 5 |
RefSeq proteins (19): NP_001002796, NP_001284706, NP_001380464, NP_001380465, NP_001380466, NP_001380467, NP_001380468, NP_001380469, NP_001380470, NP_001380471, NP_001380472, NP_001380473, NP_001380474, NP_001380475, NP_001380476, NP_001380477, NP_001380478, NP_001380479, NP_078993* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000008 | C2_dom | Domain |
| IPR013583 | MCTP_C | Domain |
| IPR035892 | C2_domain_sf | Homologous_superfamily |
Pfam: PF00168, PF08372
UniProt features (51 total): binding site 24, compositionally biased region 8, splice variant 7, sequence conflict 4, domain 3, transmembrane region 2, chain 1, sequence variant 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6DN14-F1 | 65.61 | 0.15 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (24): 277; 277; 283; 330; 330; 332; 332; 338; 486; 486; 492; 539 …
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 250 (showing top):
GOBP_REGULATION_OF_NEURONAL_SYNAPTIC_PLASTICITY, ZHAN_MULTIPLE_MYELOMA_MF_UP, BOYAULT_LIVER_CANCER_SUBCLASS_G2, GOBP_NEGATIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_NEUROTRANSMITTER_TRANSPORT, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_NEGATIVE_REGULATION_OF_RESPONSE_TO_OXIDATIVE_STRESS, GOBP_CELL_CELL_SIGNALING, GOBP_REGULATION_OF_VESICLE_MEDIATED_TRANSPORT, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_NEGATIVE_REGULATION_OF_TRANSPORT, AP1_Q4_01, GOBP_REGULATION_OF_SYNAPTIC_PLASTICITY, OCT1_03, GOBP_REGULATION_OF_RESPONSE_TO_STRESS
GO Biological Process (6): calcium-mediated signaling (GO:0019722), negative regulation of cell migration (GO:0030336), negative regulation of endocytosis (GO:0045806), regulation of neurotransmitter secretion (GO:0046928), regulation of neuronal synaptic plasticity (GO:0048168), negative regulation of response to oxidative stress (GO:1902883)
GO Molecular Function (2): calcium ion binding (GO:0005509), metal ion binding (GO:0046872)
GO Cellular Component (8): endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), synaptic vesicle membrane (GO:0030672), recycling endosome (GO:0055037), endosome (GO:0005768), endoplasmic reticulum (GO:0005783), cytoplasmic vesicle (GO:0031410), synapse (GO:0045202)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| endomembrane system | 2 |
| cytoplasm | 2 |
| intracellular signaling cassette | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| negative regulation of cell motility | 1 |
| endocytosis | 1 |
| regulation of endocytosis | 1 |
| negative regulation of transport | 1 |
| negative regulation of cellular component organization | 1 |
| neurotransmitter secretion | 1 |
| modulation of chemical synaptic transmission | 1 |
| regulation of neurotransmitter transport | 1 |
| regulation of secretion by cell | 1 |
| regulation of synaptic plasticity | 1 |
| response to oxidative stress | 1 |
| negative regulation of response to stimulus | 1 |
| regulation of response to oxidative stress | 1 |
| metal ion binding | 1 |
| cation binding | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| cellular anatomical structure | 1 |
| synaptic vesicle | 1 |
| exocytic vesicle membrane | 1 |
| endosome | 1 |
| cytoplasmic vesicle | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular vesicle | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
724 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MCTP1 | EFCAB11 | Q9BUY7 | 618 |
| MCTP1 | IQCK | Q8N0W5 | 562 |
| MCTP1 | ARB2A | Q8WUF8 | 551 |
| MCTP1 | PRR32 | B1ATL7 | 526 |
| MCTP1 | SLF1 | Q9BQI6 | 524 |
| MCTP1 | PRSS45P | Q7RTY3 | 504 |
| MCTP1 | CFAP45 | Q9UL16 | 499 |
| MCTP1 | DCAF12L2 | Q5VW00 | 470 |
| MCTP1 | MAP4K3 | Q8IVH8 | 456 |
| MCTP1 | PYROXD1 | Q8WU10 | 447 |
| MCTP1 | ADGRE1 | Q14246 | 438 |
| MCTP1 | DTNA | Q9Y4J8 | 438 |
| MCTP1 | BLTP2 | Q14667 | 419 |
| MCTP1 | TMEM44 | Q2T9K0 | 416 |
| MCTP1 | LMBR1 | Q8WVP7 | 414 |
| MCTP1 | POU5F2 | Q8N7G0 | 414 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MCTP1 | MATR3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (5): MCTP1 (Proximity Label-MS), MCTP1 (Affinity Capture-MS), MCTP1 (Affinity Capture-MS), MCTP1 (Affinity Capture-MS), MCTP1 (Proximity Label-MS)
ESM2 similar proteins: A0A2R8QFQ6, A0A2R8RWN9, D3Z7P3, E9PV86, G3MWR8, O54865, O60907, O89050, O94925, P13264, P16068, P20595, P58058, Q02153, Q08211, Q12800, Q13042, Q14722, Q28141, Q28D01, Q3MHJ2, Q3ULA2, Q4R8H1, Q4ZHR9, Q5R874, Q5RB35, Q5SP67, Q5SRY7, Q5ZHN3, Q6DN14, Q7RTP6, Q7T2U9, Q7Z6J6, Q8BTG7, Q8C6G8, Q8CJ19, Q8K4Q0, Q8N122, Q8N2K0, Q8R349
Diamond homologs: A0A075F932, A0FGR8, A4IJ05, K8FE10, O00445, O00750, O08625, O08835, O35681, O43581, P04409, P05128, P05129, P05130, P05696, P10102, P10829, P13677, P17252, P20444, P21521, P21579, P21707, P24505, P24506, P24507, P29101, P34693, P40748, P40749, P41823, P41885, P46096, P46097, P47191, P47708, P47709, P47861, P48018, P50232
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
130 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 91 |
| Likely benign | 4 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
6938 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:94714775:A:AC | donor_gain | 1.0000 |
| 5:94714776:C:CC | donor_gain | 1.0000 |
| 5:94779105:ATTAC:A | donor_loss | 1.0000 |
| 5:94779106:TTACC:T | donor_loss | 1.0000 |
| 5:94779107:TA:T | donor_loss | 1.0000 |
| 5:94779108:A:AC | donor_gain | 1.0000 |
| 5:94779108:ACC:A | donor_loss | 1.0000 |
| 5:94779109:C:CC | donor_gain | 1.0000 |
| 5:94799011:A:AC | donor_gain | 1.0000 |
| 5:94799012:C:CC | donor_gain | 1.0000 |
| 5:94870870:A:AC | donor_gain | 1.0000 |
| 5:94870870:ACAG:A | donor_gain | 1.0000 |
| 5:94870871:C:CC | donor_gain | 1.0000 |
| 5:94870871:CAG:C | donor_gain | 1.0000 |
| 5:94870871:CAGC:C | donor_gain | 1.0000 |
| 5:94870909:C:CA | donor_gain | 1.0000 |
| 5:94871313:A:AC | donor_gain | 1.0000 |
| 5:94871314:C:CG | donor_gain | 1.0000 |
| 5:94871314:CAG:C | donor_gain | 1.0000 |
| 5:94871314:CAGA:C | donor_gain | 1.0000 |
| 5:94871413:TGTTG:T | acceptor_gain | 1.0000 |
| 5:94871429:A:C | acceptor_gain | 1.0000 |
| 5:94871431:A:C | acceptor_gain | 1.0000 |
| 5:94871433:A:AC | acceptor_gain | 1.0000 |
| 5:94871433:A:C | acceptor_gain | 1.0000 |
| 5:94873042:A:T | acceptor_gain | 1.0000 |
| 5:94873133:A:AC | donor_gain | 1.0000 |
| 5:94873134:C:CC | donor_gain | 1.0000 |
| 5:94873137:A:AC | donor_gain | 1.0000 |
| 5:94873138:C:CC | donor_gain | 1.0000 |
AlphaMissense
6519 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:94708596:A:C | F948L | 1.000 |
| 5:94708596:A:T | F948L | 1.000 |
| 5:94708597:A:G | F948S | 1.000 |
| 5:94708598:A:G | F948L | 1.000 |
| 5:94870910:C:G | G735R | 1.000 |
| 5:94870910:C:T | G735R | 1.000 |
| 5:94870942:A:G | L724S | 1.000 |
| 5:94871340:C:T | G705D | 1.000 |
| 5:94871341:C:G | G705R | 1.000 |
| 5:94871367:T:A | D696V | 1.000 |
| 5:94871367:T:G | D696A | 1.000 |
| 5:94871368:C:G | D696H | 1.000 |
| 5:94871379:A:T | V692D | 1.000 |
| 5:94873156:C:A | W673C | 1.000 |
| 5:94873156:C:G | W673C | 1.000 |
| 5:94873157:C:G | W673S | 1.000 |
| 5:94873158:A:G | W673R | 1.000 |
| 5:94873158:A:T | W673R | 1.000 |
| 5:94873163:G:T | P671H | 1.000 |
| 5:94873175:T:A | K667I | 1.000 |
| 5:94873222:A:C | C651W | 1.000 |
| 5:94873224:A:G | C651R | 1.000 |
| 5:94873225:A:C | F650L | 1.000 |
| 5:94873225:A:T | F650L | 1.000 |
| 5:94873227:A:G | F650L | 1.000 |
| 5:94873229:G:T | P649Q | 1.000 |
| 5:94873232:T:C | D648G | 1.000 |
| 5:94873234:A:C | S647R | 1.000 |
| 5:94873234:A:T | S647R | 1.000 |
| 5:94873236:T:G | S647R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000000677 (5:95273784 G>A), RS1000002912 (5:95022691 G>A), RS1000003346 (5:94961381 G>A), RS1000004930 (5:95230185 T>A,C), RS1000012018 (5:94773796 G>A), RS1000012427 (5:94910381 T>A), RS1000021896 (5:95004635 G>A), RS1000031219 (5:94818272 C>G,T), RS1000031340 (5:95093535 C>T), RS1000034118 (5:94755909 T>C,G), RS1000041958 (5:94864036 G>GA), RS1000055165 (5:94765711 A>G), RS1000056 (5:94987278 T>C), RS1000056776 (5:94917878 C>T), RS1000059967 (5:95185154 G>A)
Disease associations
OMIM: gene MIM:616296 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): neuromuscular disease (MONDO:0019056)
Orphanet (1): Neuromuscular disease (Orphanet:68381)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000387_9 | Bipolar disorder | 1.000000e-07 |
| GCST001961_7 | Anorexia nervosa | 3.000000e-06 |
| GCST003262_504 | Post bronchodilator FEV1 | 4.000000e-07 |
| GCST003264_1032 | Post bronchodilator FEV1/FVC ratio | 3.000000e-06 |
| GCST004649_5 | Isovolumetric relaxation time | 9.000000e-06 |
| GCST007327_196 | Smoking status (ever vs never smokers) | 3.000000e-11 |
| GCST008103_177 | Bipolar disorder | 8.000000e-06 |
| GCST008810_81 | Smoking initiation (ever regular vs never regular) | 8.000000e-09 |
| GCST008829_7 | Neuritic plaque | 3.000000e-06 |
| GCST009597_62 | Multiple sclerosis | 4.000000e-06 |
| GCST010600_6 | Dietary fat liking | 4.000000e-06 |
| GCST010701_40 | Cortical surface area (MOSTest) | 9.000000e-23 |
| GCST010702_25 | Subcortical volume (MOSTest) | 4.000000e-39 |
| GCST010703_194 | Brain morphology (MOSTest) | 9.000000e-11 |
| GCST011703_70 | Smoking initiation | 6.000000e-10 |
| GCST90093325_9 | Language functional connectivity | 7.000000e-09 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004314 | forced expiratory volume |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0008204 | left ventricular diastolic function measurement |
| EFO:0004318 | smoking behavior |
| EFO:0005670 | smoking initiation |
| EFO:0006798 | neuritic plaque measurement |
| EFO:0010816 | dietary fat liking measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0007797 | language measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009468 | Neuromuscular Diseases | C10.668 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
80 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 5 |
| Air Pollutants | increases expression, affects expression, increases abundance, decreases expression | 4 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases expression | 4 |
| trichostatin A | decreases expression, increases expression | 2 |
| sulforaphane | increases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| (+)-JQ1 compound | decreases expression | 2 |
| Formaldehyde | decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Silicon Dioxide | increases expression | 2 |
| Tretinoin | affects cotreatment, decreases expression, increases expression | 2 |
| Aflatoxin B1 | decreases expression, decreases methylation | 2 |
| Asbestos, Crocidolite | increases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| sotorasib | decreases expression, affects cotreatment | 1 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| 6-hydroxy-5-((p- sulfophenyl)azo)-2-naphthalenesulfonic acid disodium salt | affects cotreatment, decreases expression | 1 |
| bisphenol A | affects cotreatment, decreases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| ethyl-p-hydroxybenzoate | increases expression | 1 |
| 3,4-dichloroaniline | increases expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
Clinical trials (associated diseases)
198 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00331656 | PHASE4 | UNKNOWN | Comparative Study of Non-Invasive Mask Ventilation vs Cuirass Ventilation in Patients With Acute Respiratory Failure. |
| NCT00994552 | PHASE4 | UNKNOWN | Comparison of Pressure Support and Pressure Control Ventilation in Chronic Respiratory Failure |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00942227 | PHASE3 | COMPLETED | The Value of Traction in Treatment of Lumbar Radiculopathy |
| NCT00979108 | PHASE3 | COMPLETED | The Value of Traction in the Treatment of Cervical Radiculopathy |
| NCT01826487 | PHASE3 | COMPLETED | Phase 3 Study of Ataluren in Participants With Nonsense Mutation Duchenne Muscular Dystrophy (nmDMD) |
| NCT02090959 | PHASE3 | TERMINATED | An Extension Study of Ataluren (PTC124) in Participants With Nonsense Mutation Dystrophinopathy |
| NCT02436096 | PHASE3 | COMPLETED | A Study to Evaluate eFFIcacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With fibRoMyalgia |
| NCT02829814 | PHASE3 | TERMINATED | Repeat of: A Study to Evaluate Efficacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With Fibromyalgia |
| NCT03179631 | PHASE3 | COMPLETED | Long-Term Outcomes of Ataluren in Duchenne Muscular Dystrophy |
| NCT05126758 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of Deramiocel (CAP-1002) in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT05156320 | PHASE3 | COMPLETED | Efficacy and Safety of Apitegromab in Patients With Later-Onset Spinal Muscular Atrophy Treated With Nusinersen or Risdiplam |
| NCT05337553 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Efficacy and Safety of Taldefgrobep Alfa in Participants With Spinal Muscular Atrophy |
| NCT05626855 | PHASE3 | ACTIVE_NOT_RECRUITING | Long-Term Safety & Efficacy of Apitegromab in Patients With SMA Who Completed Previous Trials of Apitegromab |
| NCT06672237 | PHASE3 | RECRUITING | A Phase 3 Study of NTLA-2001 in ATTRv-PN |
| NCT01074359 | PHASE2 | TERMINATED | Safety and Efficacy Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation |
| NCT01371149 | PHASE2 | COMPLETED | Patient -Ventilator Interaction in Chronic Respiratory Failure |
| NCT02022072 | PHASE2 | TERMINATED | Evaluation of Vital Capacity |
| NCT03127514 | PHASE2 | COMPLETED | AMX0035 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT03406780 | PHASE2 | COMPLETED | A Study of CAP-1002 in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT03921528 | PHASE2 | COMPLETED | An Active Treatment Study of SRK-015 in Patients With Type 2 or Type 3 Spinal Muscular Atrophy |
| NCT05479981 | PHASE2 | COMPLETED | Extension of AOC 1001-CS1 (MARINA) Study in Adult Myotonic Dystrophy Type 1 (DM1) Patients |
| NCT06339580 | PHASE2 | RECRUITING | Assessment of Volume-targeted Ventilation in Patients With Neuromuscular Disease |
| NCT07071935 | PHASE2 | NOT_YET_RECRUITING | A Clinical Trial of Early Ventilation in Amyotrophic Lateral Sclerosis (EVENT ALS) |
| NCT07287189 | PHASE2 | RECRUITING | Phase 2 Study of SAT-3247 in Pediatric Ambulatory Patients |
| NCT00252252 | PHASE1 | COMPLETED | AutoVPAP Versus VPAP; Assessment of Sleep and Ventilation |
| NCT01560741 | PHASE1 | UNKNOWN | Telemedicine and Ventilator Titration in Chronic Respiratory Patients Initiating Non-invasive Ventilation |
| NCT01621984 | PHASE1 | COMPLETED | Therapeutic Riding and Neuromuscular Disease |
| NCT01758510 | PHASE1 | COMPLETED | Safety Study of HLA-haplo Matched Allogenic Bone Marrow Derived Stem Cell Treatment in Amyotrophic Lateral Sclerosis |
| NCT03440034 | PHASE1 | COMPLETED | Study of Pioglitazone in Sporadic Inclusion Body Myositis |
| NCT05730842 | PHASE1 | COMPLETED | Absorption, Metabolism, Excretion and Absolute Bioavailability of EDG-5506 in Healthy Volunteers |
| NCT03272802 | PHASE2/PHASE3 | UNKNOWN | Treatment Effect of Edaravone in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00860951 | PHASE1/PHASE2 | COMPLETED | P300 Brain Computer Interface Keyboard to Operate Assistive Technology |
| NCT02362425 | PHASE1/PHASE2 | COMPLETED | Antioxidant Therapy in RYR1-Related Congenital Myopathy |
| NCT00001201 | Not specified | COMPLETED | Evaluation of Neuromuscular Disease |
| NCT00002044 | Not specified | COMPLETED | A Pilot Study To Evaluate the Effect of Retrovir (Zidovudine: AZT) in the Treatment of Human Immunodeficiency Virus (HIV) Associated Dementia and Neuromuscular Diseases |
| NCT00004553 | Not specified | COMPLETED | Electromyography to Diagnose Neuromuscular Disorders |
| NCT00015470 | Not specified | COMPLETED | Diagnostic Evaluation of Patients With Neuromuscular Disease |
| NCT00017745 | Not specified | COMPLETED | Phenotype/Genotype Correlations in Neuromuscular Disorders |
| NCT00695591 | Not specified | COMPLETED | Home Sleep Testing in Neuromuscular Disease Patients |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neuromuscular disease