MDM4

gene
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Also known as MDMXHDMX

Summary

MDM4 (MDM4 regulator of p53, HGNC:6974) is a protein-coding gene on chromosome 1q32.1, encoding Protein Mdm4 (O15151). Contributes to p53/TP53 regulation. It is a selective cancer dependency (DepMap: 11.8% of cell lines).

This gene encodes a nuclear protein that contains a p53 binding domain at the N-terminus and a RING finger domain at the C-terminus, and shows structural similarity to p53-binding protein MDM2. Both proteins bind the p53 tumor suppressor protein and inhibit its activity, and have been shown to be overexpressed in a variety of human cancers. However, unlike MDM2 which degrades p53, this protein inhibits p53 by binding its transcriptional activation domain. This protein also interacts with MDM2 protein via the RING finger domain, and inhibits the latter’s degradation. So this protein can reverse MDM2-targeted degradation of p53, while maintaining suppression of p53 transactivation and apoptotic functions. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene.

Source: NCBI Gene 4194 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): bone marrow failure syndrome 6 (Moderate, ClinGen) — +1 more curated relationship
  • GWAS associations: 25
  • Clinical variants (ClinVar): 74 total — 1 pathogenic
  • Phenotypes (HPO): 14
  • Druggable target: yes — 7 molecules with ChEMBL bioactivity
  • Cancer dependency (DepMap): dependent in 11.8% of screened cell lines
  • MANE Select transcript: NM_002393

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:6974
Approved symbolMDM4
NameMDM4 regulator of p53
Location1q32.1
Locus typegene with protein product
StatusApproved
AliasesMDMX, HDMX
Ensembl geneENSG00000198625
Ensembl biotypeprotein_coding
OMIM602704
Entrez4194

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 20 protein_coding, 3 nonsense_mediated_decay, 2 retained_intron

ENST00000367179, ENST00000367180, ENST00000367182, ENST00000367183, ENST00000454264, ENST00000462012, ENST00000463049, ENST00000470797, ENST00000470908, ENST00000471783, ENST00000612738, ENST00000614459, ENST00000616250, ENST00000880814, ENST00000880815, ENST00000880816, ENST00000880817, ENST00000922675, ENST00000922676, ENST00000922677, ENST00000922678, ENST00000922679, ENST00000959566, ENST00000959567, ENST00000959568

RefSeq mRNA: 7 — MANE Select: NM_002393 NM_001204171, NM_001204172, NM_001278516, NM_001278517, NM_001278518, NM_001278519, NM_002393

CCDS: CCDS1447, CCDS55674, CCDS55675, CCDS60396, CCDS73007, CCDS73008, CCDS73009

Canonical transcript exons

ENST00000367182 — 11 exons

ExonStartEnd
ENSE00001039927204537430204537497
ENSE00001123001204549113204558120
ENSE00001841654204516406204516509
ENSE00003495179204532191204532246
ENSE00003526016204530684204530817
ENSE00003552617204525484204525596
ENSE00003622295204544535204544684
ENSE00003656110204526360204526434
ENSE00003662322204546797204546877
ENSE00003686502204542784204542944
ENSE00003687904204538209204538308

Expression profiles

Bgee: expression breadth ubiquitous, 270 present calls, max score 98.24.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 35.2008 / max 597.0157, expressed in 1806 samples.

FANTOM5 promoters (15 alternative TSS)

Promoter IDTPM avgSamples expressed
797130.14891804
79853.15631107
79720.7779456
79700.6210384
79730.105759
2018960.101633
79750.087514
79740.079437
79760.036610
79800.02406

Top tissues by expression

295 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
nippleUBERON:000203098.24gold quality
oocyteCL:000002397.86gold quality
colonic epitheliumUBERON:000039797.83gold quality
trabecular bone tissueUBERON:000248397.76gold quality
upper leg skinUBERON:000426297.43gold quality
pylorusUBERON:000116696.82gold quality
calcaneal tendonUBERON:000370196.77gold quality
sural nerveUBERON:001548896.71gold quality
cardia of stomachUBERON:000116296.67gold quality
pericardiumUBERON:000240796.58gold quality
superior surface of tongueUBERON:000737196.52gold quality
seminal vesicleUBERON:000099896.21gold quality
corpus callosumUBERON:000233696.19gold quality
trigeminal ganglionUBERON:000167596.14gold quality
superficial temporal arteryUBERON:000161496.10gold quality
epithelium of nasopharynxUBERON:000195196.08gold quality
skin of hipUBERON:000155495.85gold quality
mucosa of paranasal sinusUBERON:000503095.85gold quality
inferior vagus X ganglionUBERON:000536395.84gold quality
mammalian vulvaUBERON:000099795.72gold quality
adult organismUBERON:000702395.71gold quality
corpus epididymisUBERON:000435995.68gold quality
renal medullaUBERON:000036295.60gold quality
tendonUBERON:000004395.54gold quality
buccal mucosa cellCL:000233695.41gold quality
penisUBERON:000098995.39gold quality
caput epididymisUBERON:000435895.20gold quality
saphenous veinUBERON:000731895.10gold quality
secondary oocyteCL:000065594.94gold quality
cauda epididymisUBERON:000436094.93gold quality

Single-cell (SCXA)

Detected in 8 experiment(s), a significant marker in 5.

ExperimentMarker?Max mean expression
E-MTAB-6505yes744.46
E-MTAB-9067yes13.20
E-MTAB-6678yes4.92
E-CURD-122yes4.36
E-CURD-97no670.07
E-GEOD-124858no473.03
E-MTAB-9801no4.15
E-ANND-3no0.00

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

1 targets.

TargetRegulation
TP53Unknown

Upstream regulators (CollecTRI, top): ELK1, ETS1, TP53, TP73

miRNA regulators (miRDB)

339 targeting MDM4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-126-5P100.0072.713180
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-5692A100.0074.406850
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-9-5P100.0072.282361
HSA-MIR-3163100.0077.238605
HSA-MIR-188-3P100.0068.761240
HSA-MIR-3646100.0073.565283
HSA-MIR-340-5P100.0072.504437
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-3120-5P100.0065.56965
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-1252-5P100.0069.802774
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-34A-5P99.9971.211784
HSA-MIR-449A99.9971.051776
HSA-MIR-150-5P99.9966.691976
HSA-MIR-450099.9972.722367
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-428299.9975.366408
HSA-MIR-33A-5P99.9968.621055
HSA-MIR-33B-5P99.9968.581062
HSA-MIR-548AW99.9972.573559

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 11.8% of screened cell lines.

Literature-anchored findings (GeneRIF, showing 40)

  • stability is regulated by p53-induced caspase cleavage, which plays an important functional role. proteolytic modifications may regulate its intracellular levels (PMID:11840332)
  • MDMX, when exceedingly overexpressed, inhibits MDM2-mediated p53 degradation by competing with MDM2 for p53 binding (PMID:11953423)
  • MDMX dramatically inhibits the acetylation of p53 induced by both endogenous and ectopically expressed p300/CBP. (PMID:12162806)
  • MDMX is transported to the cell nucleus upon DNA damage with or without p53 (PMID:12370303)
  • MdmX is a RING finger ubiquitin ligase capable of synergistically enhancing Mdm2 ubiquitination (PMID:12393902)
  • Smad-induced transactivation by MdmX occurs by altering Smad interaction with its coactivator p300 (PMID:12483531)
  • mouse double minute 4 homolog gene amplification is associated with malignant gliomas on 1q32 (PMID:12640683)
  • MDMX is ubiquinated and degraded by MDM2 (PMID:12860999)
  • DNA damage-induced MDMX degradation is mediated by MDM2 (PMID:12963717)
  • findings reveal a novel role for MDM4 protein by demonstrating that in non-tumor cells under stress conditions it may act as a positive regulator of p53 protein activity (PMID:14660608)
  • MdmX represses E2F1 transactivation (PMID:14739777)
  • hMdmx is overexpressed in a significant percentage of various human tumors and amplified in 5% of primary breast tumors, all of which retained wild-type p53. iRNA-mediated reduction of hMdmx inhibited cell growth potential in a p53-dependent manner (PMID:15199139)
  • Mdm2 and mdmx prevent ASPP1 and ASPP2 from stimulating the apoptotic function of p53 by binding and inhibiting the transcriptional activity of p53. (PMID:15782125)
  • sites important for Hdm2-mediated ubiquitination of Hdmx after double-strand break induction (PMID:15788536)
  • MdmX can affect post-translational modification and stability of Mdm2 and p53 activity through interaction with ARF (PMID:15876864)
  • HDMX gene was amplified in 17% of soft tissue sarcoma patienets and gene amplification was associated with poor prognosis. (PMID:15906355)
  • sumoylation-deficient MDMX mutant undergoes normal ubiquitination and degradation by MDM2, normal nuclear translocation and degradation after DNA damage, and inhibits p53 with wild type efficiency (PMID:15907800)
  • identification of functionally different alleles of genes and suggestion that the different alleles at this SNP locus in the MRP1 gene may account, in part, for inter-individual variations and population differences in drug response (PMID:15944197)
  • deletion of Mdm4 enhances the ability of Mdm2 to promote cell growth and tumor formation, indicating that Mdm4 has antioncogenic properties when Mdm2 is overexpressed (PMID:16027727)
  • ATM directly activates p53 while activating a safe-lock mechanism to inactivate the negative regulators of p53, Mdm2, and Mdmx [review] (PMID:16082221)
  • ATM and Chk2-dependent phosphorylation of MDMX contribute to p53 activation after DNA damage. (PMID:16163388)
  • MdmX may have different roles in the regulation of Mdm2 activity for ubiquitination of pRB and p53 (PMID:16510145)
  • Mdm4 regulates tumor suppressor p53 activity, while Mdm2 mainly controls p53 stability (PMID:16616333)
  • These results demonstrate a sophisticated control by ATM of a target protein, Hdmx, which itself is one of several ATM targets in the ATM-p53 axis of the DNA damage response. (PMID:16943424)
  • MDM4 is alternatively spliced following UV irradiation. Alternate forms of MDM4 place selective pressure on the cells to acquire additional alterations in the p53 pathway. (PMID:17018606)
  • amplification of the MDMX gene and increased expression of MDMX protein are strongly selected for during tumour progression as a mechanism to suppress the p53 response in RB1-deficient retinal cells (PMID:17080083)
  • MDMX is an important regulator of p53 response to ribosomal stress and RNA-targeting chemotherapy agents. (PMID:17110929)
  • functions of the extreme C-terminus of MDM2 can be provided by MDMX (PMID:17159902)
  • the MDM2 and MDMX complex has a role in abundance and activity of p53 (PMID:17616658)
  • Expression of both MDM2 and MDM4 in tumors without p53 mutations strongly suggests that MDM2 and MDM4 inhibit the activity of this tumor suppressor in head and neck squamous carcinomas. (PMID:17651783)
  • These results demonstrate that MDMX and MDM2 independently and cooperatively regulate the proteasome-mediated degradation of p21 at the G(1) and early S phases. (PMID:18086887)
  • MDMX expression is regulated by mitogenic signaling pathways. This mechanism may protect normal proliferating cells from p53 but also hamper p53 response during tumor development. (PMID:18172009)
  • There is no evidence for a major role of MDM4 coding variants in the inherited susceptibility towards breast cancer in German patients. (PMID:18279506)
  • Levels of MDM2, MDM4, and its variants, MDM4-S (originally HDMX-S) and MDM4-211 (originally HDMX211), in a group of 57 papillary thyroid carcinomas, were estimated. (PMID:18335186)
  • stabilization of MDMX by Akt may be an alternative mechanism by which Akt up-regulates MDM2 protein levels and exerts its oncogenic effects on p53 in tumor cells (PMID:18356162)
  • data indicate that gain/amplification and overexpression of MDM4 is a novel molecular mechanism by which a subset of urothelial cell carcinoma escapes p53-dependent growth control, thus providing new avenues for therapeutic intervention. (PMID:18451213)
  • Overexpression of MDM2 and MDM4 is not a necessary step in retinoblastoma development. (PMID:18644346)
  • Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain. (PMID:18677113)
  • MDM4 gain is associated with the early transition from normal retina to retinoma. (PMID:18785023)
  • the presence of conserved and non-conserved interactions along the conformational transition pathway that may be exploited in the design of selective and dual modulators of MDMX activity (PMID:18826207)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriomdm4ENSDARG00000057513
mus_musculusMdm4ENSMUSG00000054387
rattus_norvegicusMdm4ENSRNOG00000009696

Paralogs (1): MDM2 (ENSG00000135679)

Protein

Protein identifiers

Protein Mdm4O15151 (reviewed: O15151)

Alternative names: Double minute 4 protein, Mdm2-like p53-binding protein, Protein Mdmx, p53-binding protein Mdm4

All UniProt accessions (8): A0A087WTR9, A0A087WUE3, A0A087WZ58, O15151, Q5T0Y2, Q5T0Y4, Q68DC0, Q6MZR7

UniProt curated annotations — full annotation on UniProt →

Function. Contributes to p53/TP53 regulation. Inhibits p53/TP53- and p73/TP73-mediated cell cycle arrest and apoptosis by binding their transcriptional activation domains. Inhibits degradation of MDM2. Can reverse MDM2-targeted degradation of TP53 while maintaining suppression of TP53 transactivation and apoptotic functions.

Subunit / interactions. Component of a ternary complex composed of FAM193A, MDM4 and MDM2; interaction of FAM193A with MDM4 is mediated by the MDM4 RING-type zinc finger and results in MDM4 destabilization, leading to enhanced p53/TP53 transcriptional activity. Although FAM193A interacts with MDM4 and MDM2, it does not affect formation of the p53-MDM2-MDM4 transcriptional repressor complex. Interacts with MDM2; enhances the ubiquitin ligase activity of MDM2 on TP53. Interacts with TP53. Interacts with TP73 and USP2. Found in a trimeric complex with USP2, MDM2 and MDM4. Interacts (phosphorylated) with YWHAG; negatively regulates MDM4 activity toward TP53. Interacts with RAD54B; RAD54B enhances the ubiquitin ligase activity of MDM2 on TP53 by promoting MDM2-MDM4 heterodimerization.

Subcellular location. Nucleus. Cytoplasm.

Tissue specificity. Expressed in all tissues tested with high levels in thymus.

Post-translational modifications. Phosphorylated. Phosphorylation at Ser-367 promotes interaction with YWHAG and subsequent ubiquitination and degradation. Phosphorylation at Ser-342 also induces ubiquitination and degradation but to a lower extent. Ubiquitinated and degraded by MDM2. Deubiquitination by USP2 on the other hand stabilizes the MDM4 protein.

Disease relevance. Bone marrow failure syndrome 6 (BMFS6) [MIM:618849] A form of bone marrow failure syndrome, a heterogeneous group of life-threatening disorders characterized by hematopoietic defects in association with a range of variable extra-hematopoietic manifestations. BMFS6 is an autosomal dominant form characterized by intermittent neutropenia, lymphopenia, or anemia associated with hypocellular bone marrow, and increased susceptibility to cancer. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. Region I is sufficient for binding TP53 and inhibiting its G1 arrest and apoptosis functions. It also binds TP73. Region II contains most of a central acidic region and a putative C4-type zinc finger. The RING finger domain which coordinates two molecules of zinc mediates the heterooligomerization with MDM2.

Induction. Down-regulated by cisplatin (at protein level).

Miscellaneous. Cancer-specific isoform, may counteract MDM2/MDM4-mediated p53 degradation.

Similarity. Belongs to the MDM2/MDM4 family.

Isoforms (5)

UniProt IDNamesCanonical?
O15151-11yes
O15151-22, MDMX-S
O15151-33, MDMX
O15151-4HDMX211
O15151-55

RefSeq proteins (7): NP_001191100, NP_001191101, NP_001265445, NP_001265446, NP_001265447, NP_001265448, NP_002384* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001841Znf_RINGDomain
IPR001876Znf_RanBP2Domain
IPR003121SWIB_MDM2_domainDomain
IPR013083Znf_RING/FYVE/PHDHomologous_superfamily
IPR015458MDM4Family
IPR016495p53_neg-reg_MDM_2/4Family
IPR036443Znf_RanBP2_sfHomologous_superfamily
IPR036885SWIB_MDM2_dom_sfHomologous_superfamily
IPR051652MDM2_MDM4_MUL1Family

Pfam: PF00641, PF13920

UniProt features (42 total): strand 11, helix 7, splice variant 4, region of interest 4, sequence variant 3, turn 3, modified residue 2, zinc finger region 2, chain 1, domain 1, mutagenesis site 1, sequence conflict 1, short sequence motif 1, compositionally biased region 1

Structure

Experimental structures (PDB)

39 structures, top 30 by resolution.

PDBMethodResolution (Å)
6Q9YX-RAY DIFFRACTION1.2
3FEAX-RAY DIFFRACTION1.33
3FE7X-RAY DIFFRACTION1.35
3FDOX-RAY DIFFRACTION1.4
3LBJX-RAY DIFFRACTION1.5
4RXZX-RAY DIFFRACTION1.55
6Q9WX-RAY DIFFRACTION1.55
3EQYX-RAY DIFFRACTION1.63
7C3YX-RAY DIFFRACTION1.63
7C44X-RAY DIFFRACTION1.65
8HDGX-RAY DIFFRACTION1.73
3JZPX-RAY DIFFRACTION1.74
3JZOX-RAY DIFFRACTION1.8
3JZQX-RAY DIFFRACTION1.8
3MQRX-RAY DIFFRACTION1.8
3U15X-RAY DIFFRACTION1.8
7C3QX-RAY DIFFRACTION1.8
3DABX-RAY DIFFRACTION1.9
8IA5X-RAY DIFFRACTION1.93
2VYRX-RAY DIFFRACTION2
6Q9QX-RAY DIFFRACTION2.1
6YR7X-RAY DIFFRACTION2.1
7EL4X-RAY DIFFRACTION2.11
5MNJX-RAY DIFFRACTION2.16
2VJEX-RAY DIFFRACTION2.2
6YR5X-RAY DIFFRACTION2.25
2VJFX-RAY DIFFRACTION2.3
6Q9SX-RAY DIFFRACTION2.4
6Q9UX-RAY DIFFRACTION2.4
5VK1X-RAY DIFFRACTION2.69

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O15151-F160.780.27

Antibody-complex structures (SAbDab): 12VYR

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (2): 342, 367

Mutagenesis-validated functional residues (1):

PositionPhenotype
437fails to interact with mdm2.

Function

Pathways and Gene Ontology

Reactome pathways

24 pathways

IDPathway
R-HSA-2559580Oxidative Stress Induced Senescence
R-HSA-2559585Oncogene Induced Senescence
R-HSA-5689880Ub-specific processing proteases
R-HSA-6804756Regulation of TP53 Activity through Phosphorylation
R-HSA-6804757Regulation of TP53 Degradation
R-HSA-6804760Regulation of TP53 Activity through Methylation
R-HSA-69541Stabilization of p53
R-HSA-1640170Cell Cycle
R-HSA-212436Generic Transcription Pathway
R-HSA-2262752Cellular responses to stress
R-HSA-2559583Cellular Senescence
R-HSA-3700989Transcriptional Regulation by TP53
R-HSA-392499Metabolism of proteins
R-HSA-5633007Regulation of TP53 Activity
R-HSA-5688426Deubiquitination
R-HSA-597592Post-translational protein modification
R-HSA-6806003Regulation of TP53 Expression and Degradation
R-HSA-69563p53-Dependent G1 DNA Damage Response
R-HSA-69580p53-Dependent G1/S DNA damage checkpoint
R-HSA-69615G1/S DNA Damage Checkpoints
R-HSA-69620Cell Cycle Checkpoints
R-HSA-73857RNA Polymerase II Transcription
R-HSA-74160Gene expression (Transcription)
R-HSA-8953897Cellular responses to stimuli

MSigDB gene sets: 367 (showing top): GOBP_CARDIAC_CHAMBER_DEVELOPMENT, GOBP_CARDIAC_SEPTUM_DEVELOPMENT, GOBP_ENDOCARDIAL_CUSHION_DEVELOPMENT, MAZ_Q6, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_ENDOCARDIAL_CUSHION_MORPHOGENESIS, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS, SHEPARD_BMYB_MORPHOLINO_DN, RODRIGUES_NTN1_TARGETS_DN, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN, CATRRAGC_UNKNOWN, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_CARDIAC_ATRIUM_DEVELOPMENT, GOBP_ATRIAL_SEPTUM_DEVELOPMENT

GO Biological Process (20): negative regulation of transcription by RNA polymerase II (GO:0000122), heart valve development (GO:0003170), atrioventricular valve morphogenesis (GO:0003181), endocardial cushion morphogenesis (GO:0003203), ventricular septum development (GO:0003281), atrial septum development (GO:0003283), negative regulation of cell population proliferation (GO:0008285), protein ubiquitination (GO:0016567), DNA damage response, signal transduction by p53 class mediator (GO:0030330), negative regulation of protein catabolic process (GO:0042177), negative regulation of apoptotic process (GO:0043066), negative regulation of DNA-templated transcription (GO:0045892), protein stabilization (GO:0050821), regulation of cell cycle (GO:0051726), protein-containing complex assembly (GO:0065003), cellular response to hypoxia (GO:0071456), negative regulation of signal transduction by p53 class mediator (GO:1901797), regulation of cell population proliferation (GO:0042127), protein-containing complex organization (GO:0043933), regulation of biological quality (GO:0065008)

GO Molecular Function (6): ubiquitin-protein transferase activity (GO:0004842), enzyme activator activity (GO:0008047), zinc ion binding (GO:0008270), enzyme binding (GO:0019899), protein binding (GO:0005515), metal ion binding (GO:0046872)

GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), transcription repressor complex (GO:0017053)

Reactome top-level categories

Rollup of top-15 pathways:

CategoryPathways
Regulation of TP53 Activity3
Cellular Senescence2
Deubiquitination1
Regulation of TP53 Expression and Degradation1
p53-Dependent G1 DNA Damage Response1
RNA Polymerase II Transcription1
Cellular responses to stimuli1
Cellular responses to stress1
Generic Transcription Pathway1
Transcriptional Regulation by TP531
Post-translational protein modification1
Metabolism of proteins1
p53-Dependent G1/S DNA damage checkpoint1
G1/S DNA Damage Checkpoints1
Cell Cycle Checkpoints1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cardiac septum development2
cell population proliferation2
signal transduction by p53 class mediator2
regulation of cellular process2
regulation of transcription by RNA polymerase II1
transcription by RNA polymerase II1
negative regulation of DNA-templated transcription1
heart development1
anatomical structure development1
atrioventricular valve development1
heart valve morphogenesis1
heart morphogenesis1
endocardial cushion development1
mesenchyme morphogenesis1
cardiac ventricle development1
cardiac atrium development1
regulation of cell population proliferation1
negative regulation of cellular process1
protein modification by small protein conjugation1
signal transduction in response to DNA damage1
negative regulation of catabolic process1
protein catabolic process1
regulation of protein catabolic process1
negative regulation of protein metabolic process1
apoptotic process1
regulation of apoptotic process1
negative regulation of programmed cell death1
DNA-templated transcription1
regulation of DNA-templated transcription1
negative regulation of RNA biosynthetic process1
regulation of protein stability1
cell cycle1
cellular component assembly1
protein-containing complex organization1
response to hypoxia1
cellular response to stress1
cellular response to decreased oxygen levels1
regulation of signal transduction by p53 class mediator1
negative regulation of intracellular signal transduction1
cellular component organization1

Protein interactions and networks

STRING

2824 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MDM4TP53P04637998
MDM4MDM2Q00987986
MDM4TCHPQ9BT92863
MDM4ATMQ13315802
MDM4CDKN2AP42771795
MDM4BRCA1P38398770
MDM4USP7Q93009768
MDM4CSNK1A1P48729756
MDM4PPM1DO15297728
MDM4E2F1Q01094663
MDM4CCND1P24385652
MDM4RPL11P25121648
MDM4IDH1O75874645
MDM4HIPK2Q9H2X6617
MDM4TP73O15350613

IntAct

191 interactions, top by confidence:

ABTypeScore
TP53MDM4psi-mi:“MI:0915”(physical association)0.970
TP53MDM4psi-mi:“MI:0914”(association)0.970
TP53MDM4psi-mi:“MI:0407”(direct interaction)0.970
MDM4TP53psi-mi:“MI:0407”(direct interaction)0.970
MDM4TP53psi-mi:“MI:0914”(association)0.970
MDM4TP53psi-mi:“MI:0220”(ubiquitination reaction)0.970
MDM4TP53psi-mi:“MI:2364”(proximity)0.970
TP53MDM4psi-mi:“MI:0403”(colocalization)0.970
MDM4TP53psi-mi:“MI:0915”(physical association)0.970
MDM2MDM4psi-mi:“MI:0915”(physical association)0.940
MDM4MDM2psi-mi:“MI:0915”(physical association)0.940

BioGRID (416): CD160 (Two-hybrid), CAPN7 (Two-hybrid), RNF115 (Two-hybrid), MDM4 (Reconstituted Complex), MDM4 (Affinity Capture-Western), RAD54B (Affinity Capture-Western), SMARCA2 (Reconstituted Complex), RAD54B (Reconstituted Complex), MDM2 (Reconstituted Complex), MDM4 (Reconstituted Complex), MDM2 (Affinity Capture-Western), MDM4 (Affinity Capture-Western), MDM4 (Reconstituted Complex), MDM4 (Affinity Capture-MS), MDM4 (Affinity Capture-MS)

ESM2 similar proteins: A0A5K7RLP0, A1YEX3, A7YWH3, B1WBU4, O15151, O35618, O43298, O88850, P24278, P97303, Q01954, Q0V8G8, Q15916, Q17RG1, Q562E2, Q5RC05, Q5RDQ6, Q5SXH7, Q5TC79, Q5VYS8, Q5W0Q7, Q5XIN1, Q6ZPY5, Q6ZSB9, Q6ZU67, Q7ZUW7, Q7ZYI3, Q8BLK9, Q8BSV3, Q8IW35, Q8K088, Q8N680, Q8N7W2, Q8TCN5, Q8VHI4, Q8WW38, Q90W33, Q96BR9, Q96S38, Q99ME3

Diamond homologs: B3H754, F4ISV9, O15151, O35618, P23804, P56273, P56950, P56951, Q00987, Q0WS06, Q2HJ21, Q5XIN1, Q60524, Q6DBH0, Q7YRZ8, Q7ZUW7, Q7ZYI3, O42354, Q84ME1, Q8LA32, Q9LYW5

SIGNOR signaling

24 interactions.

AEffectBMechanism
CDK1down-regulatesMDM4phosphorylation
MDM4“up-regulates quantity by stabilization”MDM2
ATMdown-regulatesMDM4phosphorylation
USP7up-regulatesMDM4deubiquitination
CHEK2down-regulatesMDM4phosphorylation
MDM2down-regulatesMDM4ubiquitination
ATM“down-regulates quantity by destabilization”MDM4phosphorylation
AKT“up-regulates activity”MDM4phosphorylation
CHEK1“down-regulates quantity by destabilization”MDM4phosphorylation
CHEK2“down-regulates quantity by destabilization”MDM4phosphorylation
58131-57-0down-regulatesMDM4“chemical inhibition”
CSNK1A1up-regulatesMDM4phosphorylation
CHEK1“down-regulates activity”MDM4phosphorylation
AKT1“up-regulates quantity by stabilization”MDM4phosphorylation
Ub:E2“up-regulates activity”MDM4ubiquitination
MDM4“up-regulates quantity by stabilization”MDM2binding
PPM1D“up-regulates quantity by stabilization”MDM4dephosphorylation
PELI1“up-regulates activity”MDM4ubiquitination
58131-57-0“down-regulates activity”MDM4“chemical inhibition”
MDM4“down-regulates quantity by destabilization”TP53ubiquitination
MDM4“down-regulates quantity by destabilization”MDM4ubiquitination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 53 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Activation of BAD and translocation to mitochondria8148.6×5e-14
Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex8131.1×7e-14
SARS-CoV-1 targets host intracellular signalling and regulatory pathways8131.1×7e-14
Activation of BH3-only proteins896.9×1e-12
Intrinsic Pathway for Apoptosis857.1×8e-11
RHO GTPases activate PKNs754.2×3e-09
FOXO-mediated transcription649.1×7e-08
Regulation of TP53 Degradation535.7×6e-06

GO biological processes:

GO termPartnersFoldFDR
protein targeting537.4×5e-05
regulation of protein localization625.2×5e-05
negative regulation of cell growth617.6×2e-04
intracellular protein localization817.1×1e-05
protein polyubiquitination614.1×4e-04
cellular response to hypoxia512.4×2e-03
regulation of cell cycle710.7×4e-04
protein ubiquitination86.8×1e-03

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

74 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance46
Likely benign5
Benign3

Top pathogenic / likely-pathogenic (1)

Variant IDHGVSClassification
4820129NC_000001.10:g.204445085_205890679dupPathogenic

SpliceAI

1946 predictions. Top by Δscore:

VariantEffectΔscore
1:204516505:G:GGdonor_gain1.0000
1:204525482:A:AGacceptor_gain1.0000
1:204525483:G:GGacceptor_gain1.0000
1:204525483:GT:Gacceptor_gain1.0000
1:204525483:GTT:Gacceptor_gain1.0000
1:204525483:GTTT:Gacceptor_gain1.0000
1:204525483:GTTTT:Gacceptor_gain1.0000
1:204525598:T:Gdonor_loss1.0000
1:204526354:TATCA:Tacceptor_loss1.0000
1:204526356:TCAGG:Tacceptor_loss1.0000
1:204526357:CAGG:Cacceptor_loss1.0000
1:204526358:AGGTA:Aacceptor_loss1.0000
1:204526359:G:Aacceptor_loss1.0000
1:204526432:GAG:Gdonor_gain1.0000
1:204538205:TCA:Tacceptor_loss1.0000
1:204538206:CA:Cacceptor_loss1.0000
1:204538207:A:ACacceptor_loss1.0000
1:204538207:A:AGacceptor_gain1.0000
1:204538208:G:GGacceptor_gain1.0000
1:204538208:GC:Gacceptor_gain1.0000
1:204538208:GCA:Gacceptor_gain1.0000
1:204538208:GCAA:Gacceptor_gain1.0000
1:204538208:GCAAA:Gacceptor_gain1.0000
1:204538307:AGG:Adonor_loss1.0000
1:204538309:G:GAdonor_loss1.0000
1:204538310:T:Adonor_loss1.0000
1:204542779:TATA:Tacceptor_loss1.0000
1:204542781:T:Gacceptor_gain1.0000
1:204542782:A:AGacceptor_gain1.0000
1:204542782:A:Tacceptor_loss1.0000

AlphaMissense

3243 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
1:204549125:T:CC306R0.998
1:204549167:T:CC320R0.998
1:204549125:T:AC306S0.997
1:204549126:G:CC306S0.997
1:204549169:T:GC320W0.997
1:204549176:T:AC323S0.997
1:204549176:T:CC323R0.997
1:204549177:G:CC323S0.997
1:204526391:T:CL37S0.996
1:204530798:T:CF90L0.996
1:204530800:C:AF90L0.996
1:204530800:C:GF90L0.996
1:204549119:T:AW304R0.996
1:204549119:T:CW304R0.996
1:204549168:G:AC320Y0.996
1:204549587:T:CC460R0.996
1:204549600:C:AA464D0.996
1:204549629:T:CC474R0.996
1:204530799:T:CF90S0.995
1:204549121:G:CW304C0.995
1:204549121:G:TW304C0.995
1:204549134:T:AC309S0.995
1:204549135:G:CC309S0.995
1:204549178:T:GC323W0.995
1:204549518:T:CC437R0.995
1:204530772:T:CL81S0.994
1:204549127:T:GC306W0.994
1:204549134:T:CC309R0.994
1:204549167:T:AC320S0.994
1:204549168:G:CC320S0.994

dbSNP variants (sampled 300 via entrez): RS1000021179 (1:204557354 T>A), RS1000067274 (1:204557102 A>C), RS1000086224 (1:204521149 T>C), RS1000095008 (1:204517255 G>GA), RS1000164212 (1:204539757 A>G), RS1000215959 (1:204539913 G>C), RS1000268341 (1:204527906 C>G,T), RS1000329478 (1:204527543 T>C), RS1000369930 (1:204527877 C>T), RS1000400717 (1:204555860 CA>C,CAA), RS1000461029 (1:204552166 A>G), RS1000493322 (1:204533472 T>G), RS1000524626 (1:204552574 G>A), RS1000526386 (1:204521432 C>G,T), RS1000535689 (1:204521531 C>T)

Disease associations

OMIM: gene MIM:602704 | disease phenotypes: MIM:618849, MIM:101600

GenCC curated gene-disease

DiseaseClassificationInheritance
bone marrow failure syndromeModerateAutosomal dominant
bone marrow failure syndrome 6LimitedAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
bone marrow failure syndrome 6ModerateAD

Mondo (3): bone marrow failure syndrome 6 (MONDO:0030015), Pfeiffer syndrome (MONDO:0007043), bone marrow failure syndrome (MONDO:0000159)

Orphanet (1): Pfeiffer syndrome (Orphanet:710)

HPO phenotypes

14 total (14 of 14 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000821Hypothyroidism
HP:0000938Osteopenia
HP:0001875Decreased total neutrophil count
HP:0001888Decreased total lymphocyte count
HP:0001903Anemia
HP:0003326Myalgia
HP:0005518Increased mean corpuscular volume
HP:0005528Bone marrow hypocellularity
HP:0011108Recurrent sinusitis
HP:0011904Persistence of hemoglobin F
HP:0012432Chronic fatigue
HP:0030413Squamous cell carcinoma of the tongue
HP:0031413Short telomere length

GWAS associations

25 associations (top):

StudyTraitp-value
GCST000477_53Cognitive performance5.000000e-06
GCST001916_3Breast Cancer in BRCA1 mutation carriers1.000000e-07
GCST001930_14Breast cancer2.000000e-12
GCST001942_20Prostate cancer2.000000e-11
GCST002305_1Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)4.000000e-06
GCST003842_2Breast cancer (estrogen-receptor negative)6.000000e-15
GCST003845_3Breast cancer8.000000e-18
GCST004347_1Glioma3.000000e-07
GCST004348_13Non-glioblastoma glioma3.000000e-09
GCST005076_8Breast cancer (estrogen-receptor negative)3.000000e-23
GCST006166_16Diastolic blood pressure x alcohol consumption interaction (2df test)4.000000e-09
GCST006187_4Diastolic blood pressure (cigarette smoking interaction)2.000000e-09
GCST006258_43Diastolic blood pressure5.000000e-09
GCST006259_27Systolic blood pressure1.000000e-06
GCST006922_4Regular attendance at a religious group3.000000e-08
GCST007268_79Diastolic blood pressure6.000000e-09
GCST010118_8Type 2 diabetes3.000000e-08
GCST010135_42Oily fish consumption2.000000e-08
GCST010140_32Pork consumption2.000000e-08
GCST010142_21Fish- and plant-related diet9.000000e-10
GCST010322_2Levodopa wearing off effect (time symptoms uncontrolled) in Parkinson’s disease (response to zonisamide)4.000000e-08
GCST90000025_842Appendicular lean mass4.000000e-16
GCST90002381_13Eosinophil count2.000000e-11
GCST90002382_23Eosinophil percentage of white cells6.000000e-12
GCST90014033_4Haemorrhoidal disease3.000000e-09

EFO canonical traits (12, from GWAS)

EFO IDTrait name
EFO:0003926neuropsychological test
EFO:0004329alcohol drinking
EFO:0006336diastolic blood pressure
EFO:0006527smoking status measurement
EFO:0006335systolic blood pressure
EFO:0009592social interaction measurement
EFO:0008111diet measurement
EFO:0010747response to levodopa
EFO:0010749motor function measurement
EFO:0004980appendicular lean mass
EFO:0004842eosinophil count
EFO:0007991eosinophil percentage of leukocytes

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (4): CHEMBL1255126 (SINGLE PROTEIN), CHEMBL2221344 (PROTEIN-PROTEIN INTERACTION), CHEMBL3883306 (PROTEIN-PROTEIN INTERACTION), CHEMBL4106123 (PROTEIN-PROTEIN INTERACTION)

Molecules with ChEMBL bioactivity

7 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 26,762 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL231884DIOSMIN44,880
CHEMBL5314346VERTEPORFIN4
CHEMBL3653256SIREMADLIN21,320
CHEMBL359965ALLICIN214,806
CHEMBL2381408SAR-4058381547
CHEMBL3601398CGM-0971921
CHEMBL376408ABT 73714,288

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs1563828Efficacy3docetaxel;epirubicinBreast Neoplasms

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs1563828MDM432.501docetaxel;epirubicin

Binding affinities (BindingDB)

302 measured of 306 human assays (306 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-2-yl]-4-methoxy-N,N-dimethylbenzamideIC500.07 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
(6S)-5-(5-chloro-1-methyl-6-oxo-3-pyridinyl)-6-(4-chlorophenyl)-2-(2,4-dimethoxypyrimidin-5-yl)-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-4-oneIC500.087 nMUS-9365576: Pyrrolopyrrolidinone compounds
(4S)-5-(3-chloro-4-fluorophenyl)-4-(4-chlorophenyl)-2-(2,4-dimethoxypyrimidin-5-yl)-3-[(2R)-1-methoxypropan-2-yl]-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.089 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
3-[(6S)-6-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-2-yl]-4-methoxy-N-methylbenzamideIC500.094 nMUS-9365576: Pyrrolopyrrolidinone compounds
(4S)-5-[5-chloro-2-[2-(dimethylamino)ethoxy]phenyl]-4-(4-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.101 nMUS-8969341: Pyrazolopyrrolidine compounds
3-[5-(5-chloro-2-methylphenyl)-6-(4-chlorophenyl)-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-2-yl]-4-methoxy-N-methylbenzamideIC500.116 nMUS-9365576: Pyrrolopyrrolidinone compounds
3-[(6S)-5-(3-chloro-2-fluorophenyl)-6-(4-chloro-2-methylphenyl)-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-2-yl]-4-methoxy-N-methylbenzamideIC500.119 nMUS-9365576: Pyrrolopyrrolidinone compounds
3-[5-(5-chloro-2-methylphenyl)-6-(4-chlorophenyl)-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-2-yl]-N-(2-hydroxyethoxy)-4-methoxybenzamideIC500.125 nMUS-9365576: Pyrrolopyrrolidinone compounds
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-2-yl]-4-methoxybenzonitrileIC500.14 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-[5-(hydroxymethyl)-2-methoxyphenyl]-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.14 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
2-[5-(aminomethyl)-2-methoxyphenyl]-4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.146 nMUS-8969341: Pyrazolopyrrolidine compounds
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-2-yl]-N-(2-hydroxyethyl)-4-methoxybenzamideIC500.15 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-2-yl]-4-methoxy-N-propan-2-ylbenzamideIC500.15 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
(4S)-4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.161 nMUS-8969341: Pyrazolopyrrolidine compounds
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(5-fluoro-2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.17 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(2-fluoro-6-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.17 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.17 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
5-(3-chloro-2-fluorophenyl)-4-(4-chlorophenyl)-2-[5-(hydroxymethyl)-2-methoxyphenyl]-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.17 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
5-(3-chloro-2-fluorophenyl)-4-(4-chlorophenyl)-2-[2-methoxy-5-(morpholine-4-carbonyl)phenyl]-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.18 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chlorophenyl)-5-[5-chloro-2-(2H-tetrazol-5-ylmethoxy)phenyl]-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.18 nMUS-8969341: Pyrazolopyrrolidine compounds
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-2-yl]-4-methoxybenzonitrileIC500.187 nMUS-8969341: Pyrazolopyrrolidine compounds
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-2-yl]-4-methoxy-N,N-dimethylbenzamideIC500.195 nMUS-8969341: Pyrazolopyrrolidine compounds
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-2-yl]-4-methoxy-N-methylbenzamideIC500.2 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(3-methoxy-4-pyridinyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.22 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
3-[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-2-yl]-4-methoxy-N-(2-pyrrolidin-1-ylethyl)benzamideIC500.238 nMUS-8969341: Pyrazolopyrrolidine compounds
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.25 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
3-[5-(5-chloro-1-methyl-6-oxo-3-pyridinyl)-4-(4-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-2-yl]-4-methoxy-N-methylbenzamideIC500.259 nMUS-8969341: Pyrazolopyrrolidine compounds
5-[5-chloro-1-(2-methoxyethyl)-6-oxo-3-pyridinyl]-4-(4-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.267 nMUS-8969341: Pyrazolopyrrolidine compounds
5-(5-chloro-1-methyl-6-oxo-3-pyridinyl)-2-[2-(dimethylamino)-4-methoxypyrimidin-5-yl]-4-(4-isocyanophenyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.27 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
5-(5-chloro-2-methylphenyl)-6-(4-chlorophenyl)-2-(2-methoxyphenyl)-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-4-oneIC500.298 nMUS-9365576: Pyrrolopyrrolidinone compounds
5-(5-chloro-1-ethyl-6-oxo-3-pyridinyl)-4-(4-chlorophenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.377 nMUS-8969341: Pyrazolopyrrolidine compounds
5-(5-chloro-1-methyl-6-oxo-3-pyridinyl)-4-(4-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.393 nMUS-8969341: Pyrazolopyrrolidine compounds
5-(3-chloro-2-fluorophenyl)-4-(4-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.41 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
5-(5-chloro-1-ethyl-6-oxo-3-pyridinyl)-4-(4-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.42 nMUS-8969341: Pyrazolopyrrolidine compounds
5-(5-chloro-1-methyl-6-oxo-3-pyridinyl)-4-(4-chlorophenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.425 nMUS-8969341: Pyrazolopyrrolidine compounds
methyl 3-[5-(3-chloro-4-fluorophenyl)-4-(4-chlorophenyl)-2-(2-methoxyphenyl)-6-oxo-3-propan-2-ylpyrrolo[3,4-c]pyrazol-4-yl]propanoateIC500.499 nMUS-8969341: Pyrazolopyrrolidine compounds
5-(5-chloro-1-methyl-6-oxo-3-pyridinyl)-4-(4-isocyanophenyl)-2-[4-methoxy-2-(methylamino)pyrimidin-5-yl]-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.6 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-3-propan-2-yl-2-[2-(trifluoromethoxy)phenyl]-4H-pyrrolo[3,4-d]imidazol-6-oneIC500.65 nMUS-8815926: Substituted pyrrolo[3,4-D]imidazoles for the treatment of MDM2/4 mediated diseases
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-[2-(4-methylpiperazin-1-yl)ethyl]-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.7 nMUS-8969341: Pyrazolopyrrolidine compounds
4-(4-chlorophenyl)-5-(3,4-difluorophenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.701 nMUS-8969341: Pyrazolopyrrolidine compounds
3-[5-(3-chloro-2-fluorophenyl)-6-(4-chloro-2-methylphenyl)-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-2-yl]-4-methoxy-N-methylbenzamideIC500.757 nMUS-9365576: Pyrrolopyrrolidinone compounds
(1S)-1-(4-chlorophenyl)-6-methoxy-2-[4-[methyl-[[4-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl]methyl]amino]phenyl]-7-propan-2-yloxy-1,4-dihydroisoquinolin-3-oneIC500.8 nMUS-9051279: Substituted isoquinolinones and quinazolinones
4-[(6S)-5-(5-chloro-2-oxopiperidin-3-yl)-2-[2-(dimethylamino)-4-methoxypyrimidin-5-yl]-4-oxo-1-propan-2-yl-6H-pyrrolo[3,4-b]pyrrol-6-yl]benzonitrileIC500.8 nMUS-9365576: Pyrrolopyrrolidinone compounds
5-(2-chloro-5-methoxy-4-pyridinyl)-4-(4-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC500.926 nMUS-8969341: Pyrazolopyrrolidine compounds
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-3-propan-2-yl-2-prop-2-enyl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC501.1 nMUS-8969341: Pyrazolopyrrolidine compounds
methyl 2-[[4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-6-oxo-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-2-yl]methyl]pyrrolidine-1-carboxylateIC501.1 nMUS-8969341: Pyrazolopyrrolidine compounds
4-(4-chloro-2-methylphenyl)-5-(5-chloro-2-methylphenyl)-2-(2-methoxyphenyl)-3-propan-2-yl-4H-pyrrolo[3,4-c]pyrazol-6-oneIC501.1 nMUS-8969341: Pyrazolopyrrolidine compounds
(1S)-1-(4-chlorophenyl)-6-methoxy-2-[5-[methyl-[[4-(4-oxo-3-propan-2-ylimidazolidin-1-yl)cyclohexyl]methyl]amino]-2-pyridinyl]-7-propan-2-yloxy-1,4-dihydroisoquinolin-3-oneIC501.2 nMUS-9051279: Substituted isoquinolinones and quinazolinones
5-(3-chloro-4-fluorophenyl)-4-(4-chlorophenyl)-4-(2-hydroxyethyl)-2-(2-methoxyphenyl)-3-propan-2-ylpyrrolo[3,4-c]pyrazol-6-oneIC501.3 nMUS-8969341: Pyrazolopyrrolidine compounds
(1S)-1-(4-chlorophenyl)-6-methoxy-2-[4-[methyl-[[4-(3-oxo-1,4-diazepan-1-yl)cyclohexyl]methyl]amino]phenyl]-7-propan-2-yloxy-1,4-dihydroisoquinolin-3-oneIC501.4 nMUS-9051279: Substituted isoquinolinones and quinazolinones

ChEMBL bioactivities

482 potent at pChembl≥5 of 719 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.00IC500.1nMCHEMBL5272028
9.68IC500.21nMCHEMBL3657129
9.62IC500.24nMCHEMBL5283210
9.10Ki0.8nMABT 737
8.76IC501.74nMCHEMBL5268205
8.70Kd2nMCHEMBL3347606
8.68IC502.1nMCHEMBL4514512
8.64Kd2.3nMCHEMBL2381409
8.64Kd2.3nMCHEMBL4175039
8.62Kd2.4nMCHEMBL3347580
8.61IC502.46nMCHEMBL5276426
8.52IC503nMCHEMBL4068667
8.48IC503.3nMCHEMBL4068667
8.43IC503.74nMCHEMBL1352521
8.40Kd4nMCHEMBL3347578
8.34IC504.6nMCHEMBL4065471
8.24IC505.77nMCHEMBL5282600
8.22IC506nMCHEMBL4095983
8.21Kd6.1nMCHEMBL502723
8.21IC506.1nMCHEMBL4095983
8.17Ki6.8nMCHEMBL3621947
8.17Ki6.8nMCHEMBL5290323
8.16Kd6.9nMCHEMBL5394570
8.15Ki7nMCHEMBL5439046
8.15Kd7nMCHEMBL5439046
8.10IC508nMCHEMBL5287696
8.07Kd8.5nMCHEMBL3347578
8.05IC509nMCHEMBL5410760
8.03IC509.3nMNUTLIN-3
8.00Kd10nMCHEMBL5592260
7.98IC5010.4nMCHEMBL4105199
7.97IC5010.7nMCHEMBL4095042
7.97Ki10.8nMCHEMBL5395366
7.96IC5011nMALLICIN
7.94IC5011.4nMCHEMBL5267883
7.92IC5012.1nMCHEMBL4165669
7.91IC5012.42nMCHEMBL5284067
7.90Ki12.7nMCHEMBL5408686
7.89Kd12.9nMCHEMBL5271788
7.83IC5014.8nMCHEMBL5186444
7.80Kd16nMCHEMBL3347579
7.77IC5017nMCHEMBL5180980
7.77IC5017nMCHEMBL5280843
7.77IC5017nMCHEMBL3220312
7.74IC5018.3nMCHEMBL5199785
7.74IC5018.3nMCHEMBL2313487
7.73Kd18.5nMCHEMBL4075572
7.70Kd20nMCHEMBL5180980
7.70IC5020nMCHEMBL5593446
7.70IC5020nMCHEMBL2313487

PubChem BioAssay actives

340 with measured affinity, of 747 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(3R,4S,5S,6R)-2-[4-(2,4-difluorophenyl)triazol-1-yl]-6-(hydroxymethyl)oxane-3,4,5-triol1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0001uM
(3R,4S,5S,6R)-2-[4-[(1S)-1-(3-fluorophenyl)-1-hydroxyethyl]triazol-1-yl]-6-(hydroxymethyl)oxane-3,4,5-triol1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0002uM
5-(5-chloro-1-methyl-2-oxo-3-pyridinyl)-4-(4-chlorophenyl)-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4H-pyrrolo[3,4-d]imidazol-6-one1921010: Inhibition of human MDM4 by SRP assayic500.0002uM
4-[4-[[2-(4-chlorophenyl)phenyl]methyl]piperazin-1-yl]-N-[4-[[(2R)-4-(dimethylamino)-1-phenylsulfanylbutan-2-yl]amino]-3-nitrophenyl]sulfonylbenzamide2074070: Binding affinity to MDM4/p53 interaction (unknown origin) assessed as inhibition constantki0.0008uM
(2S)-3-[4-(2,4-difluorophenyl)triazol-1-yl]-2-(9H-fluoren-9-ylmethoxycarbonylamino)propanoic acid1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0017uM
(1S)-6-methoxy-2-[4-[methyl-[[4-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl]methyl]amino]phenyl]-1-phenyl-7-propan-2-yloxy-1,4-dihydroisoquinolin-3-one1555414: Inhibition of MDMX (unknown origin)ic500.0021uM
(2S)-2-acetamido-N-[(2S)-1-[[(2S)-5-amino-1-[[(2S)-5-amino-1-[[(2S,3R)-1-[[(2S)-1-[[(3S,6S,9S,12S,15S,18S,21S,28Z,33S)-33-[[(2S)-5-amino-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1,5-dioxopentan-2-yl]carbamoyl]-18-(2-amino-2-oxoethyl)-9-(3-carbamimidamidopropyl)-12-(1H-indol-3-ylmethyl)-21,33-dimethyl-3,6,15-tris(2-methylpropyl)-2,5,8,11,14,17,20-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-28-en-21-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]pentanediamide1350470: Binding affinity to full length human MDM4 by fluorescence polarization assaykd0.0023uM
(2S)-2-acetamido-N-[(2S)-1-[[(2S)-5-amino-1-[[(2S)-5-amino-1-[[(2S,3R)-1-[[(2S)-1-[[(3S,6S,9S,12S,15S,18S,21R,28Z,33S)-33-[[(2S)-5-amino-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1,5-dioxopentan-2-yl]carbamoyl]-18-(2-amino-2-oxoethyl)-9-(4-carbamimidamidobutyl)-12-(1H-indol-3-ylmethyl)-21,33-dimethyl-3,6,15-tris(2-methylpropyl)-2,5,8,11,14,17,20-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-28-en-21-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]pentanediamide746385: Binding affinity to human recombinant full length N-terminal his-tagged MDMX expressed in Escherichia coli BL21(DE3) by fluorescence polarization assaykd0.0023uM
(2S)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-3-(4-phenyltriazol-1-yl)propanoic acid1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0025uM
(2S)-2-(3-phenylbutanoylamino)-3-[4-[3-(pyridin-2-ylamino)propoxy]phenyl]propanoic acid2117910: Inhibition of MDMX (unknown origin)ic500.0030uM
(2S)-3-[4-[3-(pyridin-2-ylamino)propoxy]phenyl]-2-(3,3,3-triphenylpropanoylamino)propanoic acid1452025: Inhibition of MDM4 in human SH-SY5Y cells assessed as reduction in MDM4 interaction with p53 after 10 mins by quantitative sandwich immune-enzymatic assayic500.0046uM
(2S)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-3-[4-[(1S)-1-hydroxy-1-phenylethyl]triazol-1-yl]propanoic acid1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0058uM
(2S)-2-(3,3-diphenylpropanoylamino)-3-[4-[3-(pyridin-2-ylamino)propoxy]phenyl]propanoic acid2117910: Inhibition of MDMX (unknown origin)ic500.0060uM
3-[(2S,5S,8S,11S,14S,17S,20S,24E,32R)-32-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxybutanoyl]amino]-3-phenylpropanoyl]amino]-20-[[(2S)-1-[[(2S)-1-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]carbamoyl]-14-(3-amino-3-oxopropyl)-17-(cyclobutylmethyl)-5-[(4-hydroxyphenyl)methyl]-8-(1H-indol-3-ylmethyl)-11,20,32-trimethyl-3,6,9,12,15,18,33-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-24-en-2-yl]propanoic acid1920980: Binding affinity to human MDM4 assessed as inhibition constantki0.0068uM
3-[(2S,5S,8S,11S,14S,17S,20S,24E,32R)-32-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxybutanoyl]amino]-3-phenylpropanoyl]amino]-20-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2R)-1-amino-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]carbamoyl]-14-(3-amino-3-oxopropyl)-5-[(4-hydroxyphenyl)methyl]-8-(1H-indol-3-ylmethyl)-11,20,32-trimethyl-17-(2-methylpropyl)-3,6,9,12,15,18,33-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-24-en-2-yl]propanoic acid1997908: Binding affinity to 6x-His-TEV-tagged human MDMX (15 to 111 residues) assessed as dissociation constant by SPR analysiskd0.0069uM
3-[(2S,5S,8S,11S,14S,17S,21Z,29R)-29-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxybutanoyl]amino]-3-phenylpropanoyl]amino]-17-[[(2S)-1-[[(2S)-1-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]carbamoyl]-14-(cyclobutylmethyl)-5-[(4-hydroxyphenyl)methyl]-8-(1H-indol-3-ylmethyl)-11,17,29-trimethyl-3,6,9,12,15,30-hexaoxo-1,4,7,10,13,16-hexazacyclotriacont-21-en-2-yl]propanoic acid1997906: Binding affinity to 6x-His-TEV-tagged human MDMX (15 to 111 residues) assessed as inhibition constant by SPR analysiski0.0070uM
(1S)-1-(3-fluorophenyl)-1-[1-(phenylsulfanylmethyl)triazol-4-yl]ethanol1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0080uM
(2S)-1-[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-amino-3-hydroxybutanoyl]amino]-3-hydroxypropanoyl]amino]-3-phenylpropanoyl]amino]propanoyl]amino]-4-carboxybutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-4-oxobutanoyl]amino]-4-methylpentanoyl]amino]-4-methylpentanoyl]amino]-3-hydroxypropanoyl]pyrrolidine-2-carboxylic acid1464362: Inhibition of p53 binding to MDMX (unknown origin) after 30 mins by SPR analysiskd0.0085uM
(1S,4R,13S,16S,19S,26S,29S,32S)-34-benzoyl-19-benzyl-16-(1H-indol-3-ylmethyl)-2,11,14,17,20,23,27,30-octaoxo-13,26-di(propan-2-yl)-29-[[3-(trifluoromethyl)phenyl]methyl]-3,7,8,9,12,15,18,21,24,28,31,34-dodecazatricyclo[30.2.1.16,9]hexatriaconta-6(36),7-diene-4-carboxamide1968799: Inhibition of human MDM4 (1 to 116 residues) incubated for 1 hrs by fluorescence polarization assayic500.0090uM
4-[(4S,5R)-4,5-bis(4-chlorophenyl)-2-(4-methoxy-2-propan-2-yloxyphenyl)-4,5-dihydroimidazole-1-carbonyl]piperazin-2-one1908071: Inhibition of GST-tagged MDM4/Biotin-tagged p53 interaction (unknown origin) incubated for 40 mins by TR-FRET assayic500.0093uM
8-[(4S,5R)-4,5-bis(4-chlorophenyl)-1-(3-oxopiperazine-1-carbonyl)-4,5-dihydroimidazol-2-yl]-1-phenyl-3,4-dihydro-1,4-benzodiazepine-2,5-dione2117903: Binding affinity to N-terminal human MDMX (22 to 110 residues) extracted from Escherichia coli BL21 (DE3) assessed as dissociation constantkd0.0100uM
methyl (2S)-3-(4-hydroxyphenyl)-2-(3,3,3-triphenylpropanoylamino)propanoate1452025: Inhibition of MDM4 in human SH-SY5Y cells assessed as reduction in MDM4 interaction with p53 after 10 mins by quantitative sandwich immune-enzymatic assayic500.0104uM
(2S)-3-(4-chlorophenyl)-2-(3,3-diphenylpropanoylamino)propanoic acid1452025: Inhibition of MDM4 in human SH-SY5Y cells assessed as reduction in MDM4 interaction with p53 after 10 mins by quantitative sandwich immune-enzymatic assayic500.0107uM
7-[(4S,5R)-4,5-bis(4-chlorophenyl)-1-(3-oxopiperazine-1-carbonyl)-4,5-dihydroimidazol-2-yl]-1-phenyl-3,4-dihydro-1,4-benzodiazepine-2,5-dione2024721: Binding affinity to MDM4/p53 (unknown origin) assessed as inhibition constant by FP assayki0.0108uM
3-prop-2-enylsulfinylsulfanylprop-1-ene2074071: Inhibition of MDM4/p53 (unknown origin)ic500.0110uM
(4S)-4-[[(2S)-1-[(2S)-2-[[(2S)-6-amino-2-[[(2R)-2-[[(2S)-4-amino-2-[[(2R)-2-amino-3-sulfanylpropanoyl]amino]-4-oxobutanoyl]amino]-3-sulfanylpropanoyl]amino]hexanoyl]amino]propanoyl]pyrrolidine-2-carbonyl]amino]-5-[[(2S,3R)-1-[[(2S)-1-[[(2S)-1-[[(2R)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2R)-1-[[(2S)-1-[[(2S)-5-amino-1-[[(2S)-1-amino-3-(1H-imidazol-4-yl)-1-oxopropan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxo-3-sulfanylpropan-2-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-3-(1H-indol-3-yl)-1-oxopropan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-1-oxo-3-sulfanylpropan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-5-oxopentanoic acid1920984: Inhibition of human MDM4/p53 interaction by SPR analysisic500.0114uM
(3S)-3-[[2-[[3-(diaminomethylideneamino)benzoyl]amino]acetyl]amino]-4-oxo-4-[[(1R)-1-phenylethyl]amino]butanoic acid1350413: Displacement of p53 from MDM4 in human SHSY-5Y cells incubated for 10 mins by sandwich ELISA methodic500.0121uM
1-[(2R,4S,5S)-4-[4-[(8R,9S,13S,14S,17S)-3,17-dihydroxy-13-methyl-7,8,9,11,12,14,15,16-octahydro-6H-cyclopenta[a]phenanthren-17-yl]triazol-1-yl]-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0124uM
(2S,5S,8S,11S,14S,17S,20S,24E,32R)-32-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxybutanoyl]amino]-3-phenylpropanoyl]amino]-N-[(2S)-1-amino-3-hydroxy-1-oxopropan-2-yl]-14-(3-amino-3-oxopropyl)-5-[(4-hydroxyphenyl)methyl]-2-(1H-imidazol-5-ylmethyl)-8-(1H-indol-3-ylmethyl)-11,20,32-trimethyl-17-(2-methylpropyl)-3,6,9,12,15,18,33-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-24-ene-20-carboxamide1997906: Binding affinity to 6x-His-TEV-tagged human MDMX (15 to 111 residues) assessed as inhibition constant by SPR analysiski0.0127uM
(4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxypropanoyl]amino]-5-amino-5-oxopentanoyl]amino]-5-[[(2S,3R)-1-[[(2S)-1-[[(3S,6S,9S,12S,15S,18S,21R,28Z,33S)-9-(4-aminobutyl)-33-[[(2S)-4-carboxy-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1-oxobutan-2-yl]carbamoyl]-18-(carboxymethyl)-12-(1H-indol-3-ylmethyl)-21,33-dimethyl-3,6,15-tris(2-methylpropyl)-2,5,8,11,14,17,20-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-28-en-21-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-5-oxopentanoic acid1920987: Binding affinity to human MDM4 assessed as dissociation constant by FP assaykd0.0129uM
ethyl 6-chloro-4’-(3-chloro-2-fluorophenyl)-1’-cyclohexyl-2-oxospiro[1H-indole-3,5’-4H-pyrazole]-3’-carboxylate1855505: Inhibition of MDM4/p53 interaction in human SH-SY5Y cells preincubated for 10 mins under shaking condition and measured after 1.5 hrs by immuno-enzymatic assayic500.0148uM
2-[5-[(Z)-(6-chloro-7-methylindol-3-ylidene)methyl]-4-hydroxy-2-oxo-1H-imidazol-3-yl]-2-(3,4-difluorophenyl)-N-(1,3-dihydroxypropan-2-yl)acetamide2117910: Inhibition of MDMX (unknown origin)ic500.0170uM
3-[[6-chloro-3-[3-[(1S)-1-(3-chlorophenyl)ethyl]-5-phenylimidazol-4-yl]-1H-indole-2-carbonyl]amino]-4-[4-(2-oxo-1,3-oxazinan-3-yl)piperidin-1-yl]benzoic acid1921008: Inhibition of human MDM4 by TR-FRET assayic500.0170uM
3-[[6-chloro-3-[3-[(1S)-1-(2,4-dichlorophenyl)ethyl]-5-phenylimidazol-4-yl]-1H-indole-2-carbonyl]amino]-4-[4-(2-oxo-1,3-oxazinan-3-yl)piperidin-1-yl]benzoic acid1908067: Inhibition of human MDM4 by TR-FRET assayic500.0170uM
5-[[2-[1-(benzenesulfonyl)pyrrol-3-yl]-1H-indol-3-yl]methyl]-2,3-dimethoxyphenol1855506: Inhibition of MDM4 (unknown origin)ic500.0183uM
2-[1-(benzenesulfonyl)pyrrol-3-yl]-3-[(3,4,5-trimethoxyphenyl)methyl]-1H-indole1908068: Inhibition of MDM4/p53 interaction in human SH-SY5Y cells using TMB as substrate incubated for 10 mins by quantitative immuno-enzymatic assayic500.0183uM
(2S)-1-[(2R)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-amino-3-hydroxybutanoyl]amino]-3-hydroxypropanoyl]amino]-3-phenylpropanoyl]amino]propanoyl]amino]-4-carboxybutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-4-oxobutanoyl]amino]-4-methylpentanoyl]amino]-4-methylpentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]pyrrolidine-2-carboxylic acid1464362: Inhibition of p53 binding to MDMX (unknown origin) after 30 mins by SPR analysiskd0.0185uM
ethyl (3R,4’R)-6-chloro-4’-(3-chloro-2-fluorophenyl)-1’-cyclohexyl-2-oxospiro[1H-indole-3,5’-4H-pyrazole]-3’-carboxylate2117910: Inhibition of MDMX (unknown origin)ic500.0200uM
(2S)-1-[(2R)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-amino-3-hydroxybutanoyl]amino]-3-hydroxypropanoyl]amino]-3-phenylpropanoyl]amino]propanoyl]amino]-4-carboxybutanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-4-oxobutanoyl]amino]-4-methylpentanoyl]amino]-4-methylpentanoyl]amino]-3-phenylpropanoyl]pyrrolidine-2-carboxylic acid1464362: Inhibition of p53 binding to MDMX (unknown origin) after 30 mins by SPR analysiskd0.0214uM
N-[(3S,4R,5R,6R)-2-[4-[(1S)-1-(3-fluorophenyl)-1-hydroxyethyl]triazol-1-yl]-4,5-bis(phenylmethoxy)-6-(phenylmethoxymethyl)oxan-3-yl]acetamide1928057: Inhibition of human DMX-p53 protein-protein interaction by ITC analysisic500.0224uM
methyl (2S)-2-(3,3-diphenylpropanoylamino)-3-(4-hydroxyphenyl)propanoate1452025: Inhibition of MDM4 in human SH-SY5Y cells assessed as reduction in MDM4 interaction with p53 after 10 mins by quantitative sandwich immune-enzymatic assayic500.0228uM
2-[5-[(Z)-(6-chloro-7-methylindol-2-ylidene)methyl]-4-hydroxy-2-oxo-1H-imidazol-3-yl]-2-(3,4-difluorophenyl)-N-(1,3-dihydroxypropan-2-yl)acetamide1855506: Inhibition of MDM4 (unknown origin)ic500.0247uM
(2S,5S,8S,11S,14S,17S,20S,24E,32R)-32-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxybutanoyl]amino]-3-phenylpropanoyl]amino]-N-[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2R)-1-amino-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]-14-(3-amino-3-oxopropyl)-5-[(4-hydroxyphenyl)methyl]-8-(1H-indol-3-ylmethyl)-2,11,20,32-tetramethyl-17-(2-methylpropyl)-3,6,9,12,15,18,33-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-24-ene-20-carboxamide1920993: Binding affinity to human MDM4 assessed as inhibition constant by fluorescence based assayki0.0247uM
(4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-hydroxypropanoyl]amino]-5-amino-5-oxopentanoyl]amino]-5-[[(2S,3R)-1-[[(2S)-1-[[(3S,6S,9S,12S,15S,18S,21R,28Z,33S)-9-(4-aminobutyl)-33-[[(2S)-4-carboxy-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1-oxobutan-2-yl]carbamoyl]-3-(2-carboxyethyl)-18-(carboxymethyl)-12-(1H-indol-3-ylmethyl)-21,33-dimethyl-6,15-bis(2-methylpropyl)-2,5,8,11,14,17,20-heptaoxo-1,4,7,10,13,16,19-heptazacyclotritriacont-28-en-21-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-5-oxopentanoic acid1920989: Binding affinity to human MDM4 assessed as dissociation constantkd0.0247uM
4-[(4S,5R)-2-[4-(3-amino-3-oxopropanoyl)-2-[(2-methylpropan-2-yl)oxy]phenyl]-5-(5-chloro-1H-indol-3-yl)-1-(3-oxopiperazine-1-carbonyl)-4,5-dihydroimidazol-4-yl]benzoic acid1855506: Inhibition of MDM4 (unknown origin)ic500.0270uM
4-[(4S,5R)-2-[4-(3-amino-3-oxopropanoyl)-2-[(2-methylpropan-2-yl)oxy]phenyl]-5-(1H-indol-3-yl)-1-(3-oxopiperazine-1-carbonyl)-4,5-dihydroimidazol-4-yl]benzoic acid1921001: Inhibition of human his-tagged MDM4 assessed as dissociation constant by ITC assaykd0.0270uM
(3S,6S,9S,12S,15S,18R,21S,24S,27S,30R)-3-benzyl-9-tert-butyl-6-[(4-chlorophenyl)methyl]-12-[(4-fluorophenyl)methyl]-27-(2-methoxyethyl)-4,15,16,18,19,24,25-heptamethyl-21-(1,3-thiazol-4-ylmethyl)-1,4,7,10,13,16,19,22,25,28-decazabicyclo[28.3.0]tritriacontane-2,5,8,11,14,17,20,23,26,29-decone2015548: Inhibition of N-terminal biotin-his-tagged MDMX (24 to 108 residues)(unknown origin) binding to p53 incubated for 1 hr by Alphascreen assayic500.0300uM
(3S,6S,9S,12S,15S,18R,21S,24S,30R)-3-benzyl-9-tert-butyl-6-[(4-chlorophenyl)methyl]-12-[(4-fluorophenyl)methyl]-4,15,16,18,19,24,25-heptamethyl-21-(1,3-thiazol-4-ylmethyl)-1,4,7,10,13,16,19,22,25,28-decazabicyclo[28.3.0]tritriacontane-2,5,8,11,14,17,20,23,26,29-decone2117910: Inhibition of MDMX (unknown origin)ic500.0300uM
(3E)-3-[(3-chlorophenyl)methylidene]-1-(3-chlorophenyl)sulfonylindol-2-one1980397: Binding affinity to MDM4/p53 interaction (unknown origin) assessed as inhibition constantki0.0310uM
[2-(1H-pyrrol-3-yl)-1H-indol-3-yl]-(3,4,5-trimethoxyphenyl)methanol2117910: Inhibition of MDMX (unknown origin)ic500.0400uM

CTD chemical–gene interactions

73 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, decreases expression4
Cyclosporineincreases expression3
bisphenol Aaffects cotreatment, decreases methylation, increases expression2
methacrylaldehydeaffects cotreatment, affects expression, increases expression, increases abundance2
Acroleinaffects cotreatment, affects expression, increases expression, increases abundance2
Copperaffects binding, increases expression2
Ozoneaffects cotreatment, affects expression, increases expression, increases abundance2
Tobacco Smoke Pollutiondecreases expression, increases expression2
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxidedecreases expression2
GSK3235025affects expression, affects splicing1
FR900359affects phosphorylation1
methylmercuric chloridedecreases expression1
naringeninaffects cotreatment, increases expression1
triphenyl phosphateaffects expression1
alpha-pineneaffects cotreatment, affects expression, increases abundance1
deoxynivalenolincreases expression1
5’-methylthioadenosineaffects expression, affects splicing1
trichostatin Aaffects expression1
beta-lapachoneincreases expression, decreases expression1
tris(1,3-dichloro-2-propyl)phosphateincreases expression1
sodium arsenitedecreases expression1
nickel chloridedecreases expression1
leptomycin Baffects cotreatment, decreases expression1
arsenic disulfidedecreases expression1
perfluorooctane sulfonic acidincreases expression1
cylindrospermopsinincreases expression1
hexabromocyclododecanedecreases expression, increases expression1
CGP 52608affects binding, increases reaction1
platycodin Ddecreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1

ChEMBL screening assays

149 unique, capped per target: 148 binding, 1 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1068494BindingInhibition of GST-tagged HDMX expressed in Escherichia coli BL21 (DE3) assessed as inhibition of HDMX binding to p53 protein by fluorescence anisotropy competition methodN-acylpolyamine inhibitors of HDM2 and HDMX binding to p53. — Bioorg Med Chem
CHEMBL1738436FunctionalPUBCHEM_BIOASSAY: Dose Response confirmation of Inhibitors of Mdm2/MdmX interaction in luminescent format. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID485346, AID488776]PubChem BioAssay data set

Cellosaurus cell lines

3 cell lines: 3 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_1049647VCancer cell lineMale
CVCL_A666RO-H85-1Cancer cell lineMale
CVCL_A9SXBL1391Cancer cell lineFemale

Clinical trials (associated diseases)

32 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00774527PHASE3COMPLETEDComparison of Cy-Atg Vs Cy-Flu-Atg for the Conditioning Therapy in Allo-HCT
NCT02393508PHASE3UNKNOWNThe Impact of Red Cell Age on Product Utilization in the Chronically Transfused Outpatient Population
NCT06940570PHASE3SUSPENDEDMethadone as an Alternative Treatment for Children Underdoing HSCT
NCT01050439PHASE2TERMINATEDUnrelated Donor Transplant for Malignant and Non-Malignant Disorders
NCT01596699PHASE2TERMINATEDPilot Trial of Clofarabine Added to Standard Busulfan and Fludarabine for Conditioning Prior to Allogeneic Hematopoietic Cell Transplantation
NCT01757145PHASE2UNKNOWNEltrombopag for Enhancing Platelet Engraftment in Adult Patients Undergoing Cord Blood Transplantation
NCT02224872PHASE2COMPLETEDTransplantation of Partially Mismatched Related or Matched Unrelated Bone Marrow for Patients With Refractory Severe Aplastic Anemia
NCT02277639PHASE2COMPLETEDReduced Intensity Conditioning Using CD3+/CD19+ Depletion for Non Malignant Transplantable Diseases
NCT02349906PHASE2COMPLETEDTreosulfan-based Versus Busulfan-based Conditioning in Paediatric Patients With Non-malignant Diseases
NCT02722668PHASE2COMPLETEDUCB Transplant for Hematological Diseases Using a Non Myeloablative Prep
NCT04356469PHASE2RECRUITINGTCR Alpha Beta T-cell Depleted Haploidentical HCT in the Treatment of Non-Malignant Hematological Disorders in Children
NCT04558736PHASE2RECRUITINGHaploidentical HCT for Severe Aplastic Anemia
NCT04965597PHASE2COMPLETEDTreosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904)
NCT07585136PHASE1NOT_YET_RECRUITINGStem Cell Mobilization and Apheresis for Life-threatening Blood Disorders
NCT01419704PHASE1/PHASE2WITHDRAWNPhase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies
NCT01966367PHASE1/PHASE2ACTIVE_NOT_RECRUITINGCD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation
NCT02055456PHASE1/PHASE2COMPLETEDNandrolone Decanoate in the Treatment of Telomeropathies
NCT02337595PHASE1/PHASE2COMPLETEDMemory T-cell Infusion to Improve Immunity After TCR-alpha/Beta Depleted Hematopoietic Stem Cell Transplantation
NCT03128996PHASE1/PHASE2RECRUITINGReduced Intensity Conditioning and Familial HLA-Mismatched BMT for Non-Malignant Disorders
NCT03513328PHASE1/PHASE2COMPLETEDConditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation
NCT02356653EARLY_PHASE1RECRUITINGExpanded Access Protocol Using CD3+/CD19+ Depleted PBSC
NCT02928991EARLY_PHASE1ACTIVE_NOT_RECRUITINGFludarabine Based RIC for Bone Marrow Failure Syndromes
NCT06787560EARLY_PHASE1RECRUITINGCD7 CAR-T Cell Sequential Allo-HSCT for Non-malignant Blood and Immune System Diseases
NCT00315419Not specifiedUNKNOWNIdentifying Characteristics of Bone Marrow Failure Syndromes
NCT00897260Not specifiedCOMPLETEDUmbilical Cord Blood Transplantation As Treatment Of Adult Patients With Hematologic Disorders
NCT02720679Not specifiedRECRUITINGInvestigation of the Genetics of Hematologic Diseases
NCT02958462Not specifiedRECRUITINGPre-myeloid Cancer and Bone Marrow Failure Clinic Study
NCT03145545Not specifiedAVAILABLEExpanded Access Protocol Using Alpha/Beta T and CD19+ Depleted PBSC
NCT04781790Not specifiedRECRUITINGFrench National Registry of Bone Marrow Failures
NCT04819607Not specifiedUNKNOWNThe Evaluating Multidisciplinary Bone Marrow Failure Care in Bone Marrow Failure and Related Disorders.
NCT05236764Not specifiedACTIVE_NOT_RECRUITINGHaploidentical Hematopoietic Cell Transplantation Using TCR Alpha/Beta and CD19 Depletion
NCT07535372Not specifiedNOT_YET_RECRUITINGASO Treatment for Syndromic Craniosynostoses