MEAK7

gene
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Also known as mEAK-7

Summary

MEAK7 (MTOR associated protein MEAK7, HGNC:29325) is a protein-coding gene on chromosome 16q24.1, encoding MTOR-associated protein MEAK7 (Q6P9B6). Activates an alternative mTOR signaling through RPS6KB2 activation and EIF4EBP1 repression to regulate cell proliferation and migration.

Involved in several processes, including TOR signaling; positive regulation of protein localization to lysosome; and response to insulin. Located in cytosol; lysosomal membrane; and nuclear lumen.

Source: NCBI Gene 57707 — RefSeq curated summary.

At a glance

  • GWAS associations: 22
  • Clinical variants (ClinVar): 157 total
  • MANE Select transcript: NM_020947

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:29325
Approved symbolMEAK7
NameMTOR associated protein MEAK7
Location16q24.1
Locus typegene with protein product
StatusApproved
AliasesmEAK-7
Ensembl geneENSG00000140950
Ensembl biotypeprotein_coding
OMIM619331
Entrez57707

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 21 protein_coding, 2 retained_intron, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined

ENST00000343629, ENST00000561807, ENST00000562447, ENST00000565079, ENST00000565701, ENST00000565765, ENST00000566995, ENST00000567321, ENST00000570036, ENST00000899776, ENST00000899777, ENST00000899778, ENST00000899779, ENST00000899780, ENST00000899781, ENST00000899782, ENST00000926571, ENST00000926572, ENST00000926573, ENST00000926574, ENST00000926575, ENST00000926576, ENST00000971298, ENST00000971299, ENST00000971300, ENST00000971301

RefSeq mRNA: 1 — MANE Select: NM_020947 NM_020947

CCDS: CCDS32498

Canonical transcript exons

ENST00000343629 — 8 exons

ExonStartEnd
ENSE000012931188447635584480026
ENSE000015146658450460184504659
ENSE000034863638448663184487059
ENSE000035357358448259284482710
ENSE000036274158448927884489422
ENSE000036424068449568384495913
ENSE000036907008448052984480708
ENSE000036928958449793484498111

Expression profiles

Bgee: expression breadth ubiquitous, 218 present calls, max score 93.28.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.1021 / max 88.3843, expressed in 1722 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
1583487.92181718
1583470.093528
1583500.058832
1583490.028021

Top tissues by expression

274 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
cervix squamous epitheliumUBERON:000692293.28silver quality
gingival epitheliumUBERON:000194986.54gold quality
squamous epitheliumUBERON:000691486.47gold quality
esophagus mucosaUBERON:000246986.14gold quality
stromal cell of endometriumCL:000225585.63gold quality
esophagus squamous epitheliumUBERON:000692084.87gold quality
endothelial cellCL:000011584.48silver quality
gingivaUBERON:000182883.63gold quality
epithelium of esophagusUBERON:000197683.00gold quality
placentaUBERON:000198782.46gold quality
lower esophagus mucosaUBERON:003583482.35gold quality
tibiaUBERON:000097981.74gold quality
esophagusUBERON:000104381.50gold quality
tongue squamous epitheliumUBERON:000691981.44silver quality
islet of LangerhansUBERON:000000681.36gold quality
vaginaUBERON:000099680.88gold quality
secondary oocyteCL:000065580.68gold quality
cortical plateUBERON:000534380.68gold quality
mucosa of transverse colonUBERON:000499179.79gold quality
uterine cervixUBERON:000000279.65gold quality
pigmented layer of retinaUBERON:000178279.51gold quality
pancreatic ductal cellCL:000207979.23gold quality
gall bladderUBERON:000211079.16gold quality
ganglionic eminenceUBERON:000402378.93gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047378.75gold quality
parietal pleuraUBERON:000240078.67gold quality
Brodmann (1909) area 23UBERON:001355478.65gold quality
colonic epitheliumUBERON:000039778.45gold quality
calcaneal tendonUBERON:000370178.41gold quality
oviduct epitheliumUBERON:000480478.37silver quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes4.72
E-MTAB-7303no702.31

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

102 targeting MEAK7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-150-5P99.9966.691976
HSA-MIR-548AW99.9972.573559
HSA-MIR-569699.9872.364487
HSA-MIR-477599.9875.006394
HSA-MIR-4789-5P99.9870.762721
HSA-MIR-4666A-3P99.9671.713434
HSA-MIR-6778-3P99.9667.292693
HSA-MIR-9983-3P99.9471.483631
HSA-MIR-651-3P99.9473.485177
HSA-MIR-4760-3P99.9370.502385
HSA-MIR-464899.9167.00710
HSA-MIR-15A-5P99.9072.802787
HSA-MIR-15B-5P99.9072.782798
HSA-MIR-430299.8967.941187
HSA-MIR-129-5P99.8870.263273
HSA-MIR-579-3P99.8671.663628
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-202-3P99.8471.411290
HSA-MIR-607999.8468.541170
HSA-MIR-664B-3P99.8471.653590
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-4799-5P99.8270.602663
HSA-MIR-313399.8170.923506
HSA-MIR-374C-5P99.8072.062910
HSA-MIR-655-3P99.8072.192909
HSA-MIR-4668-5P99.7970.583782
HSA-MIR-548AJ-5P99.7871.123085
HSA-MIR-548F-5P99.7871.023093
HSA-MIR-548G-5P99.7871.123085
HSA-MIR-548X-5P99.7871.123085

Literature-anchored findings (GeneRIF, showing 3)

  • miR325p suppresses the proliferation and migration of pancreatic adenocarcinoma cells by targeting TLDC1. (PMID:34468015)
  • Molecular basis of mEAK7-mediated human V-ATPase regulation. (PMID:35672408)
  • Identification of mEAK-7 as a human V-ATPase regulator via cryo-EM data mining. (PMID:35994636)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriomeak7ENSDARG00000062951
mus_musculusMeak7ENSMUSG00000034105
rattus_norvegicusMeak7ENSRNOG00000016224
drosophila_melanogasterCG5149FBGN0031904
caenorhabditis_elegansWBGENE00010671

Paralogs (3): TLDC2 (ENSG00000101342), NCOA7 (ENSG00000111912), OXR1 (ENSG00000164830)

Protein

Protein identifiers

MTOR-associated protein MEAK7Q6P9B6 (reviewed: Q6P9B6)

Alternative names: MTOR associated protein, eak-7 homolog, TBC/LysM-associated domain-containing protein 1, TLD domain-containing protein 1

All UniProt accessions (6): Q6P9B6, H3BM75, H3BPI4, H3BQ13, H3BTC5, H3BUB0

UniProt curated annotations — full annotation on UniProt →

Function. Activates an alternative mTOR signaling through RPS6KB2 activation and EIF4EBP1 repression to regulate cell proliferation and migration. Recruits MTOR at the lysosome, essential for MTOR signaling at the lysosome.

Subunit / interactions. Interacts (via C-terminal domain) with MTOR and MLST8; the interaction with MTOR increases upon nutrient stimulation.

Subcellular location. Membrane. Cytoplasm. Lysosome.

Induction. Addition of nutrients and insulin induces its expression (at protein level).

RefSeq proteins (1): NP_065998* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR006571TLDc_domDomain

Pfam: PF07534

UniProt features (12 total): sequence variant 7, initiator methionine 1, chain 1, mutagenesis site 1, domain 1, lipid moiety-binding region 1

Structure

Experimental structures (PDB)

3 structures.

PDBMethodResolution (Å)
7U4TELECTRON MICROSCOPY3.6
7UNEELECTRON MICROSCOPY3.73
7UNFELECTRON MICROSCOPY4.08

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q6P9B6-F186.730.71

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (1): 2

Mutagenesis-validated functional residues (1):

PositionPhenotype
2abolishes lysosomal location.

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 156 (showing top): GOBP_RESPONSE_TO_NITROGEN_COMPOUND, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GOBP_RESPONSE_TO_ACID_CHEMICAL, GOCC_VACUOLAR_MEMBRANE, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, MODULE_453, GOBP_NEGATIVE_REGULATION_OF_RESPONSE_TO_OXIDATIVE_STRESS, GOBP_PROTEIN_LOCALIZATION_TO_LYSOSOME, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_ERYTHROCYTE_UP, MODULE_205, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, KESHELAVA_MULTIPLE_DRUG_RESISTANCE, GOBP_RESPONSE_TO_INSULIN, GOBP_PROTEIN_LOCALIZATION_TO_VACUOLE, FISCHER_G2_M_CELL_CYCLE

GO Biological Process (9): response to oxidative stress (GO:0006979), regulation of cell migration (GO:0030334), response to nutrient levels (GO:0031667), TOR signaling (GO:0031929), response to insulin (GO:0032868), regulation of cell population proliferation (GO:0042127), response to amino acid (GO:0043200), positive regulation of protein localization to lysosome (GO:0150032), negative regulation of cellular response to oxidative stress (GO:1900408)

GO Molecular Function (1): protein binding (GO:0005515)

GO Cellular Component (8): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), lysosomal membrane (GO:0005765), cytosol (GO:0005829), membrane (GO:0016020), lysosome (GO:0005764)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
nuclear lumen2
response to stress1
cell migration1
regulation of cell motility1
response to stimulus1
intracellular signal transduction1
response to peptide hormone1
cell population proliferation1
regulation of cellular process1
response to acid chemical1
protein localization to lysosome1
regulation of protein localization to lysosome1
positive regulation of protein localization1
cellular response to oxidative stress1
negative regulation of cellular process1
regulation of cellular response to oxidative stress1
negative regulation of response to oxidative stress1
binding1
intracellular membrane-bounded organelle1
intracellular membraneless organelle1
intracellular anatomical structure1
lysosome1
lytic vacuole membrane1
cytoplasm1
lytic vacuole1

Protein interactions and networks

STRING

404 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MEAK7CCDC182A6NF36496
MEAK7GOLGA7BQ2TAP0491
MEAK7DHX32Q7L7V1488
MEAK7RWDD2AQ9UIY3466
MEAK7TDRKHQ9Y2W6456
MEAK7ARHGAP22Q7Z5H3449
MEAK7ART3Q13508447
MEAK7STK36Q9NRP7446
MEAK7MXRA8Q9BRK3443
MEAK7RNASEKQ6P5S7440
MEAK7TBC1D24Q9ULP9434
MEAK7C22orf39Q6P5X5433
MEAK7DHX37Q8IY37430
MEAK7CCDC85CA6NKD9421
MEAK7AGFG1P52594408

IntAct

25 interactions, top by confidence:

ABTypeScore
MEAK7TRIP13psi-mi:“MI:0915”(physical association)0.710
TRIP13MEAK7psi-mi:“MI:0915”(physical association)0.710
MEAK7NMT2psi-mi:“MI:0914”(association)0.530
SLC31A1C2orf72psi-mi:“MI:0914”(association)0.530
NRASESYT2psi-mi:“MI:2364”(proximity)0.480
AGPSpsi-mi:“MI:0915”(physical association)0.400
TK2psi-mi:“MI:0915”(physical association)0.400
GPC1SNAP23psi-mi:“MI:0915”(physical association)0.400
GPC1GANABpsi-mi:“MI:0915”(physical association)0.400
SHARPINMAP3K7psi-mi:“MI:0914”(association)0.350
TANKCNOT1psi-mi:“MI:0914”(association)0.350
TNIP2TMEM178Bpsi-mi:“MI:0914”(association)0.350
SHTN1psi-mi:“MI:0914”(association)0.350
TMEM223psi-mi:“MI:0914”(association)0.350
ARRDC5PLPP1psi-mi:“MI:0914”(association)0.350
CERS2VPS37Cpsi-mi:“MI:0914”(association)0.350
DDX28UBA6psi-mi:“MI:0914”(association)0.350
KRASESYT2psi-mi:“MI:2364”(proximity)0.270
HRASESYT2psi-mi:“MI:2364”(proximity)0.270

BioGRID (55): TLDC1 (Affinity Capture-MS), TLDC1 (Affinity Capture-MS), TLDC1 (Affinity Capture-MS), TLDC1 (Affinity Capture-MS), TLDC1 (Affinity Capture-MS), TLDC1 (Affinity Capture-MS), TLDC1 (Two-hybrid), GMFB (Co-fractionation), TLDC1 (Co-fractionation), TLDC1 (Affinity Capture-MS), TLDC1 (Affinity Capture-MS), NMT1 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), ATP6V0A1 (Affinity Capture-MS), TLDC1 (Affinity Capture-RNA)

ESM2 similar proteins: A2VE39, B1H268, D2HRF1, E1BSI0, F1MX48, O00763, O14730, O54935, O88554, O95801, P26446, P42898, P47897, Q1RMT7, Q28DH9, Q2KIJ6, Q2YD98, Q3MHH4, Q3ULW8, Q4V7A9, Q5I598, Q5R981, Q5RHR0, Q5U2Q4, Q5U2Z5, Q60596, Q66H61, Q6DDX8, Q6MG55, Q6P9B6, Q7TMM8, Q810A5, Q8BML9, Q8K0P3, Q8N1G2, Q8N5Y8, Q8N6R0, Q91WR3, Q99PL6, Q9CZT4

Diamond homologs: A0PJX2, A2ACG1, A5PKL1, A8KBE0, B4F6Q9, O14284, Q08952, Q0IID2, Q1LWV7, Q3UUG6, Q4KMM3, Q4V8B0, Q5ZJX5, Q5ZMS4, Q6C443, Q6CMK8, Q6DDZ9, Q6DFV7, Q6FSN5, Q6P9B6, Q755A3, Q874Z5, Q8K0P3, Q8N573, Q8NI08, Q9ULP9, Q9VIH7, P0CP42, P0CP43, Q6ZZF5, Q7S4P1, A1A5K6, Q29RJ2

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

157 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance120
Likely benign11
Benign8

Top pathogenic / likely-pathogenic (0)

SpliceAI

2211 predictions. Top by Δscore:

VariantEffectΔscore
16:84479883:T:TAdonor_gain1.0000
16:84479932:T:TAdonor_gain1.0000
16:84479933:C:Adonor_gain1.0000
16:84480365:T:TAdonor_gain1.0000
16:84482590:A:ACdonor_gain1.0000
16:84482591:C:CCdonor_gain1.0000
16:84482722:C:CTacceptor_gain1.0000
16:84482722:C:Tacceptor_gain1.0000
16:84495914:C:CCacceptor_gain1.0000
16:84495918:C:CTacceptor_gain1.0000
16:84497926:A:ACdonor_gain1.0000
16:84497927:C:CCdonor_gain1.0000
16:84497927:CT:Cdonor_gain1.0000
16:84497986:T:Cdonor_gain1.0000
16:84498108:TTCT:Tacceptor_gain1.0000
16:84498110:CT:Cacceptor_gain1.0000
16:84504596:CCTA:Cdonor_loss1.0000
16:84504597:CTA:Cdonor_loss1.0000
16:84504598:TA:Tdonor_loss1.0000
16:84504599:AC:Adonor_gain1.0000
16:84504600:CC:Cdonor_gain1.0000
16:84504600:CCCTG:Cdonor_gain1.0000
16:84480028:T:Cacceptor_gain0.9900
16:84480336:TAAAC:Tdonor_gain0.9900
16:84480528:CCAA:Cdonor_gain0.9900
16:84482585:GGCT:Gdonor_loss0.9900
16:84482586:GCT:Gdonor_loss0.9900
16:84482587:CTC:Cdonor_loss0.9900
16:84482589:C:CGdonor_loss0.9900
16:84482590:A:Cdonor_loss0.9900

AlphaMissense

3020 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
16:84486635:A:CF318L0.997
16:84486635:A:TF318L0.997
16:84486637:A:GF318L0.997
16:84486655:A:GW312R0.997
16:84486655:A:TW312R0.997
16:84480643:G:CS381R0.996
16:84480643:G:TS381R0.996
16:84480645:T:GS381R0.996
16:84480561:A:GW409R0.995
16:84480561:A:TW409R0.995
16:84480610:G:CS392R0.994
16:84480610:G:TS392R0.994
16:84480612:T:GS392R0.994
16:84480625:G:CC387W0.993
16:84480682:A:CF368L0.993
16:84480682:A:TF368L0.993
16:84480684:A:GF368L0.993
16:84486677:G:CF304L0.993
16:84486677:G:TF304L0.993
16:84486679:A:GF304L0.993
16:84486779:A:CF270L0.993
16:84486779:A:TF270L0.993
16:84486781:A:GF270L0.993
16:84480618:A:CY390D0.992
16:84480675:A:GW371R0.992
16:84480675:A:TW371R0.992
16:84480702:C:AG362W0.992
16:84480559:C:AW409C0.991
16:84480559:C:GW409C0.991
16:84480701:C:TG362E0.991

dbSNP variants (sampled 300 via entrez): RS1000054319 (16:84503292 G>A), RS1000130190 (16:84497657 A>C), RS1000185260 (16:84506222 T>C), RS1000239932 (16:84482439 A>C,G), RS1000273711 (16:84484117 G>A,C,T), RS1000477498 (16:84493831 G>A,C), RS1000593301 (16:84493619 C>T), RS1000619632 (16:84487593 G>A,C), RS1000834140 (16:84477444 G>T), RS1000890209 (16:84504366 G>T), RS1000952091 (16:84500740 G>A), RS1000955332 (16:84504169 T>C), RS1000955826 (16:84480327 C>A,T), RS1001091617 (16:84480139 G>C,T), RS1001113508 (16:84483423 G>T)

Disease associations

OMIM: gene MIM:619331 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

22 associations (top):

StudyTraitp-value
GCST003876_12Gut microbiota (beta diversity)5.000000e-08
GCST004610_147White blood cell count4.000000e-25
GCST004613_48Sum neutrophil eosinophil counts5.000000e-12
GCST004614_25Granulocyte count3.000000e-12
GCST004620_96Sum basophil neutrophil counts8.000000e-12
GCST004625_158Monocyte count1.000000e-16
GCST004626_136Myeloid white cell count1.000000e-13
GCST004627_162Lymphocyte count2.000000e-23
GCST004629_146Neutrophil count1.000000e-11
GCST005652_8Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)6.000000e-06
GCST006976_101Macular thickness2.000000e-13
GCST008399_6Cocaine dependence9.000000e-06
GCST009391_342Metabolite levels6.000000e-06
GCST90002379_177Basophil count1.000000e-10
GCST90002388_174Lymphocyte count6.000000e-46
GCST90002391_80Mean corpuscular hemoglobin concentration3.000000e-12
GCST90002393_274Monocyte count2.000000e-37
GCST90002395_227Mean platelet volume4.000000e-14
GCST90002397_250Mean spheric corpuscular volume5.000000e-21
GCST90002398_302Neutrophil count7.000000e-13
GCST90002400_185Plateletcrit2.000000e-12
GCST90002407_561White blood cell count2.000000e-37

EFO canonical traits (12, from GWAS)

EFO IDTrait name
EFO:0007874gut microbiome measurement
EFO:0004833neutrophil count
EFO:0004842eosinophil count
EFO:0007987granulocyte count
EFO:0005090basophil count
EFO:0005091monocyte count
EFO:0004587lymphocyte count
EFO:0003959cleft lip
EFO:0009116vitamin supplement exposure measurement
EFO:0010433triacylglycerol 56:6 measurement
EFO:0004528mean corpuscular hemoglobin concentration
EFO:0007985platelet crit

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

20 total (human), top 20 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects expression, increases expression3
FR900359increases phosphorylation1
pyrogallol 1,3-dimethyl etherincreases expression, affects cotreatment, affects localization1
sodium arsenitedecreases expression1
potassium chromate(VI)increases expression1
perfluorooctane sulfonic acidincreases expression1
jinfukangincreases expression1
Arsenic Trioxideincreases expression1
Leflunomidedecreases expression1
Benzo(a)pyreneaffects methylation, decreases methylation1
Enzyme Inhibitorsdecreases activity, increases O-linked glycosylation1
Furaldehydeaffects cotreatment, affects localization, decreases expression1
Ivermectindecreases expression1
Methotrexatedecreases expression1
Progesteroneincreases expression1
Silicon Dioxideincreases expression1
Smokeincreases expression1
Sodium Chlorideaffects cotreatment, affects localization, decreases expression, increases expression1
Thimerosaldecreases expression1
Tobacco Smoke Pollutionaffects expression1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cocaine dependence