MET
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Also known as HGFRRCCP2DFNB97
Summary
MET (MET proto-oncogene, receptor tyrosine kinase, HGNC:7029) is a protein-coding gene on chromosome 7q31.2, encoding Hepatocyte growth factor receptor (P08581). Receptor tyrosine kinase that transduces signals from the extracellular matrix into the cytoplasm by binding to hepatocyte growth factor/HGF ligand.
This gene encodes a member of the receptor tyrosine kinase family of proteins and the product of the proto-oncogene MET. The encoded preproprotein is proteolytically processed to generate alpha and beta subunits that are linked via disulfide bonds to form the mature receptor. Further processing of the beta subunit results in the formation of the M10 peptide, which has been shown to reduce lung fibrosis. Binding of its ligand, hepatocyte growth factor, induces dimerization and activation of the receptor, which plays a role in cellular survival, embryogenesis, and cellular migration and invasion. Mutations in this gene are associated with papillary renal cell carcinoma, hepatocellular carcinoma, and various head and neck cancers. Amplification and overexpression of this gene are also associated with multiple human cancers.
Source: NCBI Gene 4233 — RefSeq curated summary.
At a glance
- Gene–disease (curated): papillary renal cell carcinoma (Definitive, ClinGen) — +7 more curated relationships
- GWAS associations: 23
- Clinical variants (ClinVar): 4,867 total — 6 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 2
- Druggable target: yes — 95 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000245
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7029 |
| Approved symbol | MET |
| Name | MET proto-oncogene, receptor tyrosine kinase |
| Location | 7q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HGFR, RCCP2, DFNB97 |
| Ensembl gene | ENSG00000105976 |
| Ensembl biotype | protein_coding |
| OMIM | 164860 |
| Entrez | 4233 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000318493, ENST00000397752, ENST00000422097, ENST00000436117, ENST00000454623, ENST00000456159, ENST00000495962, ENST00000917365, ENST00000950406, ENST00000950407
RefSeq mRNA: 4 — MANE Select: NM_000245
NM_000245, NM_001127500, NM_001324401, NM_001324402
CCDS: CCDS43636, CCDS47689
Canonical transcript exons
ENST00000397752 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000717791 | 116763050 | 116763268 |
| ENSE00000717803 | 116769645 | 116769791 |
| ENSE00000717811 | 116771498 | 116771654 |
| ENSE00000717833 | 116771849 | 116771989 |
| ENSE00000717861 | 116774881 | 116775111 |
| ENSE00000717902 | 116781988 | 116782097 |
| ENSE00000717928 | 116783304 | 116783469 |
| ENSE00000717937 | 116795655 | 116795791 |
| ENSE00001530016 | 116759391 | 116759490 |
| ENSE00001619404 | 116758459 | 116758620 |
| ENSE00001898661 | 116795887 | 116798377 |
| ENSE00003596200 | 116777389 | 116777469 |
| ENSE00003663921 | 116778776 | 116778957 |
| ENSE00004014102 | 116739950 | 116740084 |
| ENSE00004014105 | 116757638 | 116757774 |
| ENSE00004014106 | 116740852 | 116741025 |
| ENSE00004014112 | 116731668 | 116731859 |
| ENSE00004014113 | 116757437 | 116757539 |
| ENSE00004014114 | 116672196 | 116672577 |
| ENSE00004014116 | 116755355 | 116755515 |
| ENSE00004014119 | 116699071 | 116700284 |
Expression profiles
Bgee: expression breadth ubiquitous, 270 present calls, max score 98.73.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.5126 / max 1025.8614, expressed in 1328 samples.
FANTOM5 promoters (17 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 80664 | 14.2331 | 1235 |
| 80660 | 2.0273 | 530 |
| 80665 | 0.8300 | 343 |
| 80663 | 0.6089 | 306 |
| 80661 | 0.2867 | 133 |
| 80677 | 0.2280 | 125 |
| 80662 | 0.2151 | 95 |
| 80667 | 0.1945 | 93 |
| 80671 | 0.1943 | 84 |
| 80668 | 0.1725 | 79 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 98.73 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.72 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.18 | gold quality |
| parietal pleura | UBERON:0002400 | 96.61 | gold quality |
| calcaneal tendon | UBERON:0003701 | 96.28 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 96.11 | gold quality |
| bronchial epithelial cell | CL:0002328 | 95.94 | gold quality |
| pleura | UBERON:0000977 | 95.79 | gold quality |
| visceral pleura | UBERON:0002401 | 94.85 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 94.76 | gold quality |
| nephron tubule | UBERON:0001231 | 94.73 | gold quality |
| bronchus | UBERON:0002185 | 94.36 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 93.93 | gold quality |
| pancreatic ductal cell | CL:0002079 | 93.69 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 93.55 | gold quality |
| gluteal muscle | UBERON:0002000 | 93.39 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.34 | gold quality |
| colonic mucosa | UBERON:0000317 | 92.53 | gold quality |
| biceps brachii | UBERON:0001507 | 92.28 | gold quality |
| placenta | UBERON:0001987 | 92.28 | gold quality |
| lower lobe of lung | UBERON:0008949 | 92.20 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 92.16 | gold quality |
| skin of hip | UBERON:0001554 | 92.14 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 92.10 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 92.08 | gold quality |
| tendon | UBERON:0000043 | 92.00 | gold quality |
| kidney epithelium | UBERON:0004819 | 91.39 | gold quality |
| seminal vesicle | UBERON:0000998 | 91.38 | gold quality |
| amniotic fluid | UBERON:0000173 | 91.31 | gold quality |
| gingival epithelium | UBERON:0001949 | 91.12 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-131882 | yes | 1055.09 |
| E-GEOD-135922 | yes | 8.39 |
| E-ENAD-27 | yes | 6.36 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, CREB3, CTNNB1, EGR1, ETS1, FOXP2, HIF1A, HTATIP2, JUN, MACC1, MITF, MYC, NFKB, NKX2-1, NME1, PAX3, PAX5, PAX6, RBPJ, RELA, SMAD2, SMAD3, SMAD4, SMAD7, SOX10, SP1, SP3, SPI1, STAT1, STAT3, TFCP2, TFE3, TP53, YBX1
miRNA regulators (miRDB)
160 targeting MET, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Role of the hepatocyte growth factor receptor, c-Met, in oncogenesis and potential for therapeutic inhibition (PMID:11750879)
- Modulation of the c-Met/hepatocyte growth factor pathway in small cell lung cancer (PMID:11839685)
- Met sequesters Fas, preventing apoptosis. (PMID:11864613)
- The endophilin-CIN85-Cbl complex mediates ligand-dependent downregulation of c-Met (PMID:11894096)
- Increased c-Met expression participates in cholangiocarcinogenesis and in the early developmental stages of intrahepatic cholangiocarcinoma. (PMID:11895493)
- high expression seen in intermediate cells in normal and malignant prostate epithelium indicates they are prone to stromal invasion in prostate carcinoma (PMID:11948964)
- HGF and HGFR have an alternative role activating the via STAT3 transdution and operating on placental tissues, overall in organogenesis alteration conditions (PMID:12168776)
- a signal transduction cascade or cross-talk emanating from CD44 to c-Met (PMID:12183053)
- Overexpression of HGF/c-met appears to be a biological feedback response to the fibrotic process of systemic sclerosis. (PMID:12233882)
- MET signaling is negatively regulated by c-Cbl which induces ubiquitination of its cytoplasmic domain. (PMID:12244174)
- MET may be one of the long sought oncogenes controlling progression of primary cancers to metastasis. (PMID:12460923)
- immunoexpression of hepatocyte growth factor and c-Met in the eutopic endometrium of patients with pelvic endometrioisis is possibly useful to predict greater activity of the ectopic endometrium (PMID:12524084)
- HGF may have a role in the pathogenesis of papillary thyroid carcinoma (PMID:12538453)
- Radiation stimulates HGF receptor/c-Met expression that leads to amplifying cellular response to HGF stimulation via upregulated receptor tyrosine phosphorylation and MAP kinase activity in pancreatic cancer cells. (PMID:12594808)
- up-regulated during the in vitro recapitulation of several steps of angiogenesis; expression increased shortly after switching to angiogenic growth conditions & remained high during the first steps of angiogenesis, including cell migration & proliferation (PMID:12595309)
- Activation of the c-Met pathway targets the PI3K pathway in small cell lung cancer (PMID:12611639)
- These results indicate that overexpression of hepatocyte growth factor receptor tyrosine kinase in renal carcinoma cells participates in rapid tumor growth in vivo. (PMID:12646256)
- Ki-ras mutations and HGF signaling cooperate to enhance tumor growth by increased duration of MAPK activation and decreased apoptosis in human carcinoma cells. (PMID:12651912)
- Met is expressed by the majority of MM cell lines and by approximately half of the primary plasma cell neoplasms tested.The hepatocyte growth factor/Met pathway controls proliferation and apoptosis in multiple myeloma. (PMID:12682635)
- Endosomal dynamics of Met determine signaling output. (PMID:12686592)
- Autocrine and paracrine support of HGF-c-Met system attenuates degeneration of anterior horn cells in amyotrophic lateral sclerosis. Disruption of neuronal HGF-c-Met system at advanced stage accelerates cellular degeneration and cell death. (PMID:12707786)
- Role of the HGF receptor in proliferation and invasive behavior of osteosarcoma cell lines. (PMID:12709413)
- data define a protein kinase c-controlled traffic pathway for c-Met that operates independently of its degradative pathway (PMID:12716900)
- hypoxia promotes tumor invasion by sensitizing cells to hepatocyte growth factor stimulation, providing a molecular basis to explain Met overexpression in cancer (PMID:12726861)
- Gab1 and the Met receptor interact in a novel manner, such that the activated kinase domain of Met and the negative charge of phosphotyrosine 1349 engage the Gab1 MBD as an extended peptide ligand (PMID:12766170)
- Met can be detected in the axillary fluids of patients who undergo conservative operations for breast cancer, and its expression in the axillary drainage may have potential as a prognostic factor. (PMID:12793903)
- N-terminal domain of HGF inhibits angiogenesis not by disrupting the HGF/c-met interaction but rather by interfering with the endothelial glycosaminoglycans. (PMID:12847110)
- Activation of c-Met in colorectal carcinoma cells leads to constitutive association of tyrosine-phosphorylated beta-catenin (PMID:12856716)
- hepatocyte growth factor and c-Met/HGF receptor have roles in prostate neoplasm progression (PMID:12883672)
- c-Met signaling has roles in scattering, angiogenesis, proliferation, enhanced cell motility, invasion, and eventual metastasis [review] (PMID:12884908)
- These data suggest that coexpression of the MET and RON receptors confer a selective advantage to ovarian cancer cells and might promote ovarian cancer progression. (PMID:12915129)
- C-met expression is a significant marker for tall cell variant papillary carcinoma of the thyroid gland. (PMID:14508824)
- MUC1 and Met can be detected in the axillary fluids of patients with breast cancer; the expression of both tumor markers in the axillary drainage is strongly associated with unfavorable tumor features and can be used as a prognostic factor (PMID:14509156)
- Retroviral ribozyme transgenes targeting HGF/SF in fibroblasts or its receptor cMET in mammary cancer cells can reduce the growth of mammary cancer and associated angiogenesis by inhibiting paracrine stromal-tumor cell interactions. (PMID:14519655)
- c-Met and HGF-SF have roles in the growth and progression of human and canine osteosarcoma (PMID:14524531)
- establish by deletion mutagenesis that the HGF/SF and heparin-binding sites of MET are contained within a large N-terminal domain spanning the alpha-chain (amino acids 25-307) and the first 212 amino acids of the beta-chain (amino acids 308-519) (PMID:14528000)
- Mutation present in a notable subset of patients with oropharyngeal cancer and may interfere with radioresponsiveness. (PMID:14627992)
- Differentially expressed in gastric cancer and intestinal metaplasia. (PMID:14719064)
- Ser-985 phosphorylation of c-Met is bi-directionally regulated through PKC and PP2A (PMID:15075332)
- Data identify a DpYR motif including tyrosine(1003) as being important for the direct recruitment of the c-Cbl tyrosine kinase binding domain and for ubiquitination of the Met receptor. (PMID:15123609)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | met | ENSDARG00000070903 |
| mus_musculus | Met | ENSMUSG00000009376 |
| rattus_norvegicus | Met | ENSRNOG00000052745 |
Paralogs (53): INSRR (ENSG00000027644), MUSK (ENSG00000030304), FLT4 (ENSG00000037280), EPHA3 (ENSG00000044524), ROS1 (ENSG00000047936), LTK (ENSG00000062524), ERBB3 (ENSG00000065361), TIE1 (ENSG00000066056), FGFR2 (ENSG00000066468), FGFR3 (ENSG00000068078), EPHA8 (ENSG00000070886), FGFR1 (ENSG00000077782), EPHA6 (ENSG00000080224), TYRO3 (ENSG00000092445), FLT1 (ENSG00000102755), EPHB6 (ENSG00000106123), PDGFRB (ENSG00000113721), EPHA4 (ENSG00000116106), TEK (ENSG00000120156), FLT3 (ENSG00000122025), KDR (ENSG00000128052), EPHB2 (ENSG00000133216), PDGFRA (ENSG00000134853), EPHA7 (ENSG00000135333), IGF1R (ENSG00000140443), NTRK3 (ENSG00000140538), ERBB2 (ENSG00000141736), EPHA2 (ENSG00000142627), EPHA5 (ENSG00000145242), EGFR (ENSG00000146648), EPHA1 (ENSG00000146904), NTRK2 (ENSG00000148053), MERTK (ENSG00000153208), EPHB1 (ENSG00000154928), KIT (ENSG00000157404), FGFR4 (ENSG00000160867), DDR2 (ENSG00000162733), RYK (ENSG00000163785), MST1R (ENSG00000164078), LMTK2 (ENSG00000164715)
Protein
Protein identifiers
Hepatocyte growth factor receptor — P08581 (reviewed: P08581)
Alternative names: HGF/SF receptor, Proto-oncogene c-Met, Scatter factor receptor, Tyrosine-protein kinase Met
All UniProt accessions (4): P08581, C9JKM5, E6Y365, H7C130
UniProt curated annotations — full annotation on UniProt →
Function. Receptor tyrosine kinase that transduces signals from the extracellular matrix into the cytoplasm by binding to hepatocyte growth factor/HGF ligand. Regulates many physiological processes including proliferation, scattering, morphogenesis and survival. Ligand binding at the cell surface induces autophosphorylation of MET on its intracellular domain that provides docking sites for downstream signaling molecules. Following activation by ligand, interacts with the PI3-kinase subunit PIK3R1, PLCG1, SRC, GRB2, STAT3 or the adapter GAB1. Recruitment of these downstream effectors by MET leads to the activation of several signaling cascades including the RAS-ERK, PI3 kinase-AKT, or PLCgamma-PKC. The RAS-ERK activation is associated with the morphogenetic effects while PI3K/AKT coordinates prosurvival effects. During embryonic development, MET signaling plays a role in gastrulation, development and migration of neuronal precursors, angiogenesis and kidney formation. During skeletal muscle development, it is crucial for the migration of muscle progenitor cells and for the proliferation of secondary myoblasts. In adults, participates in wound healing as well as organ regeneration and tissue remodeling. Also promotes differentiation and proliferation of hematopoietic cells. May regulate cortical bone osteogenesis. (Microbial infection) Acts as a receptor for Listeria monocytogenes internalin InlB, mediating entry of the pathogen into cells.
Subunit / interactions. Heterodimer made of an alpha chain (50 kDa) and a beta chain (145 kDa) which are disulfide linked. Binds PLXNB1. Interacts when phosphorylated with downstream effectors including STAT3, PIK3R1, SRC, PCLG1, GRB2 and GAB1. Interacts with SPSB1, SPSB2 and SPSB4. Interacts with INPP5D/SHIP1. When phosphorylated at Tyr-1356, interacts with INPPL1/SHIP2. Interacts with RANBP9 and RANBP10, as well as SPSB1, SPSB2, SPSB3 and SPSB4. SPSB1 binding occurs in the presence and in the absence of HGF, however HGF treatment has a positive effect on this interaction. Interacts with MUC20; prevents interaction with GRB2 and suppresses hepatocyte growth factor-induced cell proliferation. Interacts with GRB10. Interacts with PTPN1 and PTPN2. Interacts with LECT2; this interaction may have an antagonistic effect on receptor activation. Interacts with HSP90AA1 and HSP90AB1; the interaction suppresses MET kinase activity. Interacts with tensin TNS3. Interacts (when phosphorylated) with tensin TNS4 (via SH2 domain); the interaction increases MET protein stability by inhibiting MET endocytosis and subsequent lysosomal degradation. (Microbial infection) Interacts via extracytoplasmic residues 25-656 with L.monocytogenes InlB; MET can bind HGF, its endogenous ligand, and InlB simultaneously. InlB probably dimerizes upon binding to MET, which encourages subsequent dimerization of MET.
Subcellular location. Membrane Secreted.
Tissue specificity. Expressed in normal hepatocytes as well as in epithelial cells lining the stomach, the small and the large intestine. Found also in basal keratinocytes of esophagus and skin. High levels are found in liver, gastrointestinal tract, thyroid and kidney. Also present in the brain. Expressed in metaphyseal bone (at protein level).
Post-translational modifications. Autophosphorylated in response to ligand binding on Tyr-1234 and Tyr-1235 in the kinase domain leading to further phosphorylation of Tyr-1349 and Tyr-1356 in the C-terminal multifunctional docking site. Dephosphorylated by PTPRJ at Tyr-1349 and Tyr-1365. Dephosphorylated by PTPN1 and PTPN2. Ubiquitinated. Ubiquitination by CBL regulates MET endocytosis, resulting in decreasing plasma membrane receptor abundance, and in endosomal degradation and/or recycling of internalized receptors. O-mannosylation of IPT/TIG domains by TMEM260 is required for protein maturation. O-mannosylated residues are composed of single mannose glycans that are not elongated or modified. (Microbial infection) Tyrosine phosphorylation is stimulated by L.monocytogenes InlB. Tyrosine phosphorylation is maximal 10-20 minutes after treatment with InlB and disappears by 60 minutes. The phosphorylated residues were not identified.
Disease relevance. Activation of MET after rearrangement with the TPR gene produces an oncogenic protein. Defects in MET may be associated with gastric cancer. Hepatocellular carcinoma (HCC) [MIM:114550] A primary malignant neoplasm of epithelial liver cells. The major risk factors for HCC are chronic hepatitis B virus (HBV) infection, chronic hepatitis C virus (HCV) infection, prolonged dietary aflatoxin exposure, alcoholic cirrhosis, and cirrhosis due to other causes. The disease is caused by variants affecting the gene represented in this entry. Renal cell carcinoma papillary (RCCP) [MIM:605074] A subtype of renal cell carcinoma tending to show a tubulo-papillary architecture formed by numerous, irregular, finger-like projections of connective tissue. Renal cell carcinoma is a heterogeneous group of sporadic or hereditary carcinoma derived from cells of the proximal renal tubular epithelium. The disease is caused by variants affecting the gene represented in this entry. A common allele in the promoter region of the MET shows genetic association with susceptibility to autism in some families. Functional assays indicate a decrease in MET promoter activity and altered binding of specific transcription factor complexes. MET activating mutations may be involved in the development of a highly malignant, metastatic syndrome known as cancer of unknown primary origin (CUP) or primary occult malignancy. Systemic neoplastic spread is generally a late event in cancer progression. However, in some instances, distant dissemination arises at a very early stage, so that metastases reach clinical relevance before primary lesions. Sometimes, the primary lesions cannot be identified in spite of the progresses in the diagnosis of malignancies. Deafness, autosomal recessive, 97 (DFNB97) [MIM:616705] A form of non-syndromic sensorineural hearing loss with prelingual onset. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry. Osteofibrous dysplasia (OSFD) [MIM:607278] A congenital disorder of osteogenesis characterized by non-neoplastic, radiolucent lesions that affect the cortical bone immediately under the periosteum. It usually manifests as a painless swelling or anterior bowing of the long bones, most commonly the tibia and fibula. Disease susceptibility is associated with variants affecting the gene represented in this entry. Disease-associated variants identified in 4 families cause the deletion of exon 14. This results in the exclusion of an ubiquitination target site within the cytoplasmic domain, hence in protein stabilization. The persistent presence of MET at the cell surface in conditions of ligand-dependent activation retards osteoblastic differentiation. Arthrogryposis, distal, 11 (DA11) [MIM:620019] A form of distal arthrogryposis, a disease characterized by congenital joint contractures that mainly involve two or more distal parts of the limbs, in the absence of a primary neurological or muscle disease. DA11 is an autosomal dominant form characterized mainly by camptodactyly. Other features include absent flexion creases and limited forearm supination. The disease may be caused by variants affecting the gene represented in this entry.
Activity regulation. In its inactive state, the C-terminal tail interacts with the catalytic domain and inhibits the kinase activity. Upon ligand binding, the C-terminal tail is displaced and becomes phosphorylated, thus increasing the kinase activity.
Domain organisation. The kinase domain is involved in SPSB1 binding. The beta-propeller Sema domain mediates binding to HGF.
Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P08581-1 | 1 | yes |
| P08581-2 | 2 | |
| P08581-3 | 3, Soluble MET variant 4 |
RefSeq proteins (4): NP_000236, NP_001120972, NP_001311330, NP_001311331 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR001245 | Ser-Thr/Tyr_kinase_cat_dom | Domain |
| IPR001627 | Semap_dom | Domain |
| IPR002165 | Plexin_repeat | Repeat |
| IPR002909 | IPT_dom | Domain |
| IPR008266 | Tyr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR014756 | Ig_E-set | Homologous_superfamily |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR016201 | PSI | Domain |
| IPR016244 | Tyr_kinase_HGF/MSP_rcpt | Family |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR020635 | Tyr_kinase_cat_dom | Domain |
| IPR031148 | Plexin | Family |
| IPR036352 | Semap_dom_sf | Homologous_superfamily |
Pfam: PF01403, PF01437, PF01833, PF07714
Enzyme classification (BRENDA):
- EC 2.7.10.1 — receptor protein-tyrosine kinase (BRENDA: 44 organisms, 214 substrates, 574 inhibitors, 11 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0011–0.129 | 4 |
| AC-DYFE-6-CHLORO-W-NHME | 0.0051 | 1 |
| AC-DYFGW-NHME | 0.07 | 1 |
| YFEW | 0.232 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)
UniProt features (224 total): strand 74, sequence variant 37, helix 33, glycosylation site 14, modified residue 13, disulfide bond 12, turn 9, mutagenesis site 6, sequence conflict 5, domain 5, site 3, splice variant 3, region of interest 2, binding site 2, topological domain 2, signal peptide 1, chain 1, active site 1, transmembrane region 1
Structure
Experimental structures (PDB)
130 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9T6K | X-RAY DIFFRACTION | 1.13 |
| 9T0D | X-RAY DIFFRACTION | 1.2 |
| 4R1V | X-RAY DIFFRACTION | 1.2 |
| 9SXJ | X-RAY DIFFRACTION | 1.31 |
| 3BUX | X-RAY DIFFRACTION | 1.35 |
| 3F66 | X-RAY DIFFRACTION | 1.4 |
| 3ZCL | X-RAY DIFFRACTION | 1.4 |
| 9T08 | X-RAY DIFFRACTION | 1.46 |
| 3DKC | X-RAY DIFFRACTION | 1.52 |
| 9T0B | X-RAY DIFFRACTION | 1.54 |
| 9C1R | X-RAY DIFFRACTION | 1.59 |
| 3Q6U | X-RAY DIFFRACTION | 1.6 |
| 9T3Q | X-RAY DIFFRACTION | 1.63 |
| 4MXC | X-RAY DIFFRACTION | 1.63 |
| 5HTI | X-RAY DIFFRACTION | 1.66 |
| 9T2V | X-RAY DIFFRACTION | 1.67 |
| 6SDC | X-RAY DIFFRACTION | 1.67 |
| 7V3R | X-RAY DIFFRACTION | 1.7 |
| 5HNI | X-RAY DIFFRACTION | 1.71 |
| 3Q6W | X-RAY DIFFRACTION | 1.75 |
| 4XMO | X-RAY DIFFRACTION | 1.75 |
| 5EOB | X-RAY DIFFRACTION | 1.75 |
| 7B3Q | X-RAY DIFFRACTION | 1.75 |
| 7B40 | X-RAY DIFFRACTION | 1.76 |
| 7B44 | X-RAY DIFFRACTION | 1.76 |
| 8OUU | X-RAY DIFFRACTION | 1.77 |
| 8OUV | X-RAY DIFFRACTION | 1.78 |
| 1R0P | X-RAY DIFFRACTION | 1.8 |
| 1R1W | X-RAY DIFFRACTION | 1.8 |
| 3DKF | X-RAY DIFFRACTION | 1.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P08581-F1 | 79.28 | 0.43 |
Antibody-complex structures (SAbDab): 4 — 4K3J, 5LSP, 6I04, 6WVZ
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (4): 1204 (proton acceptor); 307–308 (cleavage); 1003 (required for ligand-induced cbl-mediated ubiquitination); 1009–1010 (breakpoint for translocation to form tpr-met oncogene)
Ligand- & substrate-binding residues (2): 1084–1092; 1110
Post-translational modifications (13): 966, 977, 990, 997, 1000, 1003, 1230, 1234, 1235, 1289, 1349, 1356, 1365
Disulfide bonds (12): 95–101, 98–160, 133–141, 172–175, 298–363, 385–397, 520–538, 526–561, 529–545, 541–551, 610–624, 697–709
Glycosylation sites (14): 45, 106, 149, 202, 399, 405, 582, 607, 635, 676, 761, 785, 879, 930
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 1349 | no effect on ligand-induced cbl-mediated ubiquitination; when associated with f-1313, f-1356 and f-1365. |
| 1356 | no effect on ligand-induced cbl-mediated ubiquitination; when associated with f-1313, f-1349 and f-1365. |
| 1365 | no effect on ligand-induced cbl-mediated ubiquitination; when associated with f-1313, f-1349 and f-1356. |
| 1234 | complete loss of kinase activity and of ligand-induced ubiquitination. alters interaction with ptpn1 and ptpn2. loss of |
| 1235 | complete loss of kinase activity. alters interaction with ptpn1 and ptpn2. loss of interaction with ptpn1 and ptpn2; whe |
| 1313 | no effect on ligand-induced cbl-mediated ubiquitination; when associated with f-1349, f-1356 and f-1365. |
Function
Pathways and Gene Ontology
Reactome pathways
44 pathways
| ID | Pathway |
|---|---|
| R-HSA-1257604 | PIP3 activates AKT signaling |
| R-HSA-2219530 | Constitutive Signaling by Aberrant PI3K in Cancer |
| R-HSA-416550 | Sema4D mediated inhibition of cell attachment and migration |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-6806942 | MET Receptor Activation |
| R-HSA-6807004 | Negative regulation of MET activity |
| R-HSA-6811558 | PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling |
| R-HSA-8851805 | MET activates RAS signaling |
| R-HSA-8851907 | MET activates PI3K/AKT signaling |
| R-HSA-8865999 | MET activates PTPN11 |
| R-HSA-8874081 | MET activates PTK2 signaling |
| R-HSA-8875360 | InlB-mediated entry of Listeria monocytogenes into host cell |
| R-HSA-8875513 | MET interacts with TNS proteins |
| R-HSA-8875555 | MET activates RAP1 and RAC1 |
| R-HSA-8875656 | MET receptor recycling |
| R-HSA-8875791 | MET activates STAT3 |
| R-HSA-9022699 | MECP2 regulates neuronal receptors and channels |
| R-HSA-9734091 | Drug-mediated inhibition of MET activation |
| R-HSA-9825892 | Regulation of MITF-M-dependent genes involved in cell cycle and proliferation |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1643685 | Disease |
| R-HSA-199418 | Negative regulation of the PI3K/AKT network |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-2219528 | PI3K/AKT Signaling in Cancer |
| R-HSA-373755 | Semaphorin interactions |
| R-HSA-400685 | Sema4D in semaphorin signaling |
| R-HSA-422475 | Axon guidance |
| R-HSA-5663202 | Diseases of signal transduction by growth factor receptors and second messengers |
| R-HSA-5663205 | Infectious disease |
MSigDB gene sets: 0 (showing top):
GO Biological Process (26): endothelial cell morphogenesis (GO:0001886), liver development (GO:0001889), cell surface receptor signaling pathway (GO:0007166), cell surface receptor protein tyrosine kinase signaling pathway (GO:0007169), negative regulation of autophagy (GO:0010507), neuron differentiation (GO:0030182), pancreas development (GO:0031016), positive regulation of transcription by RNA polymerase II (GO:0045944), hepatocyte growth factor receptor signaling pathway (GO:0048012), branching morphogenesis of an epithelial tube (GO:0048754), positive chemotaxis (GO:0050918), excitatory postsynaptic potential (GO:0060079), semaphorin-plexin signaling pathway (GO:0071526), negative regulation of hydrogen peroxide-mediated programmed cell death (GO:1901299), positive regulation of endothelial cell chemotaxis (GO:2001028), protein phosphorylation (GO:0006468), signal transduction (GO:0007165), regulation of gene expression (GO:0010468), positive regulation of microtubule polymerization (GO:0031116), negative regulation of Rho protein signal transduction (GO:0035024), cell development (GO:0048468), animal organ development (GO:0048513), negative regulation of stress fiber assembly (GO:0051497), establishment of skin barrier (GO:0061436), negative regulation of thrombin-activated receptor signaling pathway (GO:0070495), negative regulation of guanyl-nucleotide exchange factor activity (GO:1905098)
GO Molecular Function (13): protein tyrosine kinase activity (GO:0004713), hepatocyte growth factor receptor activity (GO:0005008), ATP binding (GO:0005524), semaphorin receptor activity (GO:0017154), protein phosphatase binding (GO:0019903), identical protein binding (GO:0042802), molecular function activator activity (GO:0140677), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), transmembrane receptor protein tyrosine kinase activity (GO:0004714), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (7): extracellular region (GO:0005576), plasma membrane (GO:0005886), basal plasma membrane (GO:0009925), cell surface (GO:0009986), membrane (GO:0016020), signaling receptor complex (GO:0043235), postsynapse (GO:0098794)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Signaling by MET | 7 |
| MET promotes cell motility | 3 |
| Intracellular signaling by second messengers | 1 |
| PI3K/AKT Signaling in Cancer | 1 |
| Sema4D in semaphorin signaling | 1 |
| MAPK1/MAPK3 signaling | 1 |
| Negative regulation of the PI3K/AKT network | 1 |
| Listeria monocytogenes entry into host cells | 1 |
| Transcriptional Regulation by MECP2 | 1 |
| Negative regulation of MET activity | 1 |
| MITF-M-dependent gene expression | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| endothelial cell development | 1 |
| epithelial cell morphogenesis | 1 |
| gland development | 1 |
| hepaticobiliary system development | 1 |
| signal transduction | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| autophagy | 1 |
| negative regulation of catabolic process | 1 |
| regulation of autophagy | 1 |
| cell differentiation | 1 |
| generation of neurons | 1 |
| animal organ development | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| cell surface receptor protein tyrosine kinase signaling pathway | 1 |
| tube morphogenesis | 1 |
| epithelial tube morphogenesis | 1 |
| morphogenesis of a branching epithelium | 1 |
| chemotaxis | 1 |
| regulation of postsynaptic membrane potential | 1 |
| chemical synaptic transmission, postsynaptic | 1 |
| cell surface receptor signaling pathway | 1 |
| hydrogen peroxide-mediated programmed cell death | 1 |
| negative regulation of programmed cell death | 1 |
| regulation of hydrogen peroxide-mediated programmed cell death | 1 |
| positive regulation of endothelial cell migration | 1 |
| endothelial cell chemotaxis | 1 |
| positive regulation of chemotaxis | 1 |
| regulation of endothelial cell chemotaxis | 1 |
| phosphorylation | 1 |
| protein modification process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
Protein interactions and networks
STRING
5090 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MET | HGF | P14210 | 999 |
| MET | CD44 | P16070 | 991 |
| MET | GRB2 | P29354 | 980 |
| MET | EGFR | P00533 | 979 |
| MET | STAT3 | P40763 | 948 |
| MET | CDH1 | P12830 | 944 |
| MET | IL32 | P24001 | 921 |
| MET | S100A8 | P05109 | 920 |
| MET | CXCL12 | P48061 | 902 |
| MET | PLXNB1 | O43157 | 899 |
| MET | SHC1 | P29353 | 883 |
| MET | CBL | P22681 | 874 |
| MET | EGF | P01133 | 852 |
| MET | IL6 | P05231 | 852 |
| MET | PTPN11 | Q06124 | 810 |
IntAct
362 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ERBB3 | ERBB2 | psi-mi:“MI:0914”(association) | 0.970 |
| CBL | MET | psi-mi:“MI:2364”(proximity) | 0.860 |
| CBL | MET | psi-mi:“MI:0407”(direct interaction) | 0.860 |
| MET | CBL | psi-mi:“MI:0915”(physical association) | 0.860 |
| CBL | MET | psi-mi:“MI:0915”(physical association) | 0.860 |
| MET | CBL | psi-mi:“MI:0220”(ubiquitination reaction) | 0.860 |
| HGF | MET | psi-mi:“MI:0407”(direct interaction) | 0.850 |
| MET | HGF | psi-mi:“MI:0407”(direct interaction) | 0.850 |
| MET | HGF | psi-mi:“MI:0915”(physical association) | 0.850 |
| EGFR | MET | psi-mi:“MI:0217”(phosphorylation reaction) | 0.800 |
| MET | EGFR | psi-mi:“MI:0915”(physical association) | 0.800 |
| EGFR | MET | psi-mi:“MI:0915”(physical association) | 0.800 |
| EGFR | MET | psi-mi:“MI:0914”(association) | 0.800 |
| MET | EGFR | psi-mi:“MI:0914”(association) | 0.800 |
BioGRID (371): MET (Far Western), MET (Two-hybrid), MET (Affinity Capture-MS), MET (Affinity Capture-MS), MET (Affinity Capture-MS), MET (Co-localization), MET (Co-localization), SOCS1 (Affinity Capture-Western), MET (Affinity Capture-Western), MET (Reconstituted Complex), MET (Affinity Capture-Western), MET (Affinity Capture-Western), MET (Affinity Capture-MS), EGFR (Affinity Capture-Western), ERBB3 (Affinity Capture-Western)
ESM2 similar proteins: A0A1B0GTW7, A0A1D5NSK0, A0A1L8HYT7, A0A286YEC0, A0M8R7, A0M8S8, A1X150, E2RK30, O60486, O62446, P08581, P08F94, P10643, P16056, P97523, Q00PJ8, Q07DV8, Q07DY1, Q07DZ1, Q07E01, Q07E24, Q07E37, Q07E48, Q09YH7, Q09YI9, Q09YK0, Q09YL1, Q09YN5, Q108U6, Q2IBA6, Q2IBC0, Q2IBD8, Q2IBF2, Q2IBG7, Q2QL89, Q2QLA9, Q2QLC0, Q2QLE0, Q2QLF1, Q2QLG5
Diamond homologs: A0JM20, A0M8R7, A0M8S8, A1X150, F1QVU0, G3V9H8, O02466, O35346, P00519, P00520, P00521, P00522, P00529, P06213, P07949, P08069, P08581, P08941, P09760, P0DV84, P10447, P13368, P14617, P16056, P20806, P22182, P23049, P30530, P33497, P34152, P34925, P35546, P35590, P42684, P55144, P55146, P57097, P70451, P97523, P97793
SIGNOR signaling
79 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MET | down-regulates | GLMN | relocalization |
| PTPRB | down-regulates | MET | dephosphorylation |
| PTPN1 | down-regulates | MET | dephosphorylation |
| MET | up-regulates | PTK2 | phosphorylation |
| N1’-[3-fluoro-4-[[6-methoxy-7-[3-(4-morpholinyl)propoxy]-4-quinolinyl]oxy]phenyl]-N1-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide | down-regulates | MET | “chemical inhibition” |
| PTPN2 | down-regulates | MET | dephosphorylation |
| CBL | “down-regulates quantity by destabilization” | MET | ubiquitination |
| AMG-208 | down-regulates | MET | “chemical inhibition” |
| “AMG 458” | down-regulates | MET | “chemical inhibition” |
| LSM-1131 | down-regulates | MET | “chemical inhibition” |
| N-[4-[(2-amino-3-chloro-4-pyridinyl)oxy]-3-fluorophenyl]-4-ethoxy-1-(4-fluorophenyl)-2-oxo-3-pyridinecarboxamide | down-regulates | MET | “chemical inhibition” |
| “BMS 794833” | down-regulates | MET | “chemical inhibition” |
| crizotinib | down-regulates | MET | “chemical inhibition” |
| 6-[difluoro-[6-(1-methyl-4-pyrazolyl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl]methyl]quinoline | down-regulates | MET | “chemical inhibition” |
| N-[[3-fluoro-4-[[2-(1-methyl-4-imidazolyl)-7-thieno[3,2-b]pyridinyl]oxy]anilino]-sulfanylidenemethyl]-2-phenylacetamide | down-regulates | MET | “chemical inhibition” |
| MK-2461 | down-regulates | MET | “chemical inhibition” |
| NVP-BVU972 | down-regulates | MET | “chemical inhibition” |
| 2-[4-[3-(6-quinolinylmethyl)-5-triazolo[4,5-b]pyrazinyl]-1-pyrazolyl]ethanol | down-regulates | MET | “chemical inhibition” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 119 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Constitutive Signaling by EGFRvIII | 8 | 69.6× | 1e-11 |
| Signaling by ERBB2 ECD mutants | 8 | 65.5× | 2e-11 |
| Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants | 8 | 55.7× | 6e-11 |
| PI3K events in ERBB2 signaling | 6 | 49.1× | 7e-08 |
| Signaling by ERBB2 KD Mutants | 9 | 46.4× | 2e-11 |
| GAB1 signalosome | 6 | 46.4× | 9e-08 |
| Signaling by FLT3 ITD and TKD mutants | 5 | 46.4× | 1e-06 |
| Signaling by phosphorylated juxtamembrane, extracellular and kinase domain KIT mutants | 7 | 44.3× | 7e-09 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| Schwann cell development | 6 | 62.0× | 1e-07 |
| negative regulation of epidermal growth factor receptor signaling pathway | 5 | 37.5× | 2e-05 |
| epidermal growth factor receptor signaling pathway | 11 | 26.7× | 2e-10 |
| negative regulation of cell adhesion | 7 | 26.3× | 2e-06 |
| B cell receptor signaling pathway | 6 | 23.6× | 2e-05 |
| semaphorin-plexin signaling pathway | 6 | 23.6× | 2e-05 |
| insulin receptor signaling pathway | 9 | 19.6× | 2e-07 |
| T cell differentiation | 5 | 18.8× | 4e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
4867 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 2 |
| Uncertain significance | 2659 |
| Likely benign | 1152 |
| Benign | 131 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 13882 | NM_000245.4(MET):c.3562G>T (p.Val1188Leu) | Pathogenic |
| 13884 | NM_000245.4(MET):c.3682G>A (p.Asp1228Asn) | Pathogenic |
| 13889 | NM_000245.4(MET):c.3750G>A (p.Met1250Ile) | Pathogenic |
| 13890 | NM_000245.4(MET):c.3731A>G (p.Lys1244Arg) | Pathogenic |
| 183686 | NM_000245.4(MET):c.2521T>G (p.Phe841Val) | Pathogenic |
| 998144 | NM_000245.4(MET):c.2855del (p.Phe952fs) | Pathogenic |
| 3384110 | NM_000245.4(MET):c.3503T>G (p.Phe1168Cys) | Likely pathogenic |
| 376126 | NM_000245.4(MET):c.3749T>C (p.Met1250Thr) | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
9195 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:116775106:G:A | G1085E | 1.000 |
| 7:116775111:G:A | G1087R | 1.000 |
| 7:116775111:G:C | G1087R | 1.000 |
| 7:116775111:G:T | G1087W | 1.000 |
| 7:116777389:G:A | G1087E | 1.000 |
| 7:116777394:T:A | F1089I | 1.000 |
| 7:116777394:T:C | F1089L | 1.000 |
| 7:116777394:T:G | F1089V | 1.000 |
| 7:116777395:T:C | F1089S | 1.000 |
| 7:116777395:T:G | F1089C | 1.000 |
| 7:116777396:T:A | F1089L | 1.000 |
| 7:116777396:T:G | F1089L | 1.000 |
| 7:116777397:G:C | G1090R | 1.000 |
| 7:116777398:G:A | G1090D | 1.000 |
| 7:116777412:G:A | G1095R | 1.000 |
| 7:116777412:G:C | G1095R | 1.000 |
| 7:116777412:G:T | G1095W | 1.000 |
| 7:116777413:G:A | G1095E | 1.000 |
| 7:116777450:T:G | C1107W | 1.000 |
| 7:116777452:C:A | A1108D | 1.000 |
| 7:116777457:A:C | K1110Q | 1.000 |
| 7:116777457:A:G | K1110E | 1.000 |
| 7:116777458:A:T | K1110I | 1.000 |
| 7:116777459:A:C | K1110N | 1.000 |
| 7:116777459:A:T | K1110N | 1.000 |
| 7:116777464:T:C | L1112S | 1.000 |
| 7:116778805:T:C | F1124L | 1.000 |
| 7:116778806:T:C | F1124S | 1.000 |
| 7:116778807:T:A | F1124L | 1.000 |
| 7:116778807:T:G | F1124L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000009944 (7:116743985 G>A), RS1000044357 (7:116789399 T>C), RS1000047140 (7:116774450 G>A,T), RS1000053326 (7:116757014 A>C), RS1000070601 (7:116706843 C>T), RS1000114390 (7:116787820 G>A,C,T), RS1000183177 (7:116682929 A>T), RS1000206092 (7:116785195 C>T), RS1000211667 (7:116716493 GAAAGAAAGAA>G), RS1000216862 (7:116737923 G>A,C), RS1000238085 (7:116762048 A>C,G), RS1000278836 (7:116770593 C>T), RS1000279027 (7:116778442 A>C,G), RS1000302339 (7:116764491 G>T), RS1000317282 (7:116706495 G>A)
Disease associations
OMIM: gene MIM:164860 | disease phenotypes: MIM:616705, MIM:114550, MIM:607278, MIM:609143, MIM:620019, MIM:167000, MIM:605074, MIM:142340, MIM:236000, MIM:108120, MIM:114500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hereditary papillary renal cell carcinoma | Definitive | Autosomal dominant |
| papillary renal cell carcinoma | Definitive | Autosomal dominant |
| autosomal recessive nonsyndromic hearing loss 97 | Strong | Autosomal recessive |
| osteofibrous dysplasia | Supportive | Autosomal dominant |
| hearing loss, autosomal recessive | Supportive | Autosomal recessive |
| arthrogryposis, distal, IIa 11 | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| papillary renal cell carcinoma | Definitive | AD |
| complex neurodevelopmental disorder | Disputed | AD |
| nonsyndromic genetic hearing loss | Limited | AR |
Mondo (24): renal cell carcinoma (MONDO:0005086), hereditary neoplastic syndrome (MONDO:0015356), autosomal recessive nonsyndromic hearing loss 97 (MONDO:0014739), hepatocellular carcinoma (MONDO:0007256), osteofibrous dysplasia (MONDO:0011806), arthrogryposis, distal, IIa 11 (MONDO:0031045), ovarian cancer (MONDO:0008170), lymphedema (MONDO:0019297), breast carcinoma (MONDO:0004989), squamous cell lung carcinoma (MONDO:0005097), intellectual disability (MONDO:0001071), hereditary papillary renal cell carcinoma (MONDO:0003789), pediatric hepatocellular carcinoma (MONDO:0018055), nonsyndromic genetic hearing loss (MONDO:0019497), hepatoblastoma (MONDO:0018666)
Orphanet (17): Inherited cancer-predisposing syndrome (Orphanet:140162), Renal cell carcinoma (Orphanet:217071), Hereditary papillary renal cell carcinoma (Orphanet:47044), Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636), Osteofibrous dysplasia (Orphanet:488265), Hepatocellular carcinoma (Orphanet:88673), Rare ovarian cancer (Orphanet:213500), Pediatric hepatocellular carcinoma (Orphanet:33402), Rare non-syndromic genetic deafness (Orphanet:87884), Hepatoblastoma (Orphanet:449), Congenital diaphragmatic hernia (Orphanet:2140), Classic Hodgkin lymphoma (Orphanet:391), Neuroblastoma (Orphanet:635), Distal arthrogryposis type 1 (Orphanet:1146), OBSOLETE: Lymphedema (Orphanet:79383)
HPO phenotypes
2 total (2 of 2 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0005584 | Renal cell carcinoma |
| HP:0003002 | Breast carcinoma |
GWAS associations
23 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000266_1 | Multiple sclerosis (severity) | 6.000000e-06 |
| GCST002216_16 | Triglycerides | 2.000000e-08 |
| GCST002456_5 | PR segment duration | 5.000000e-12 |
| GCST003818_64 | Resting heart rate | 7.000000e-09 |
| GCST004003_2 | Hematocrit | 2.000000e-06 |
| GCST004232_29 | HDL cholesterol levels | 2.000000e-26 |
| GCST004234_4 | HDL cholesterol levels | 6.000000e-27 |
| GCST004237_15 | Triglyceride levels | 5.000000e-09 |
| GCST004237_36 | Triglyceride levels | 8.000000e-18 |
| GCST004238_7 | Triglyceride levels | 3.000000e-18 |
| GCST005789_14 | Resting heart rate | 7.000000e-06 |
| GCST005956_17 | Waist-to-hip ratio adjusted for BMI | 5.000000e-09 |
| GCST005962_49 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 3.000000e-07 |
| GCST006019_32 | Gamma glutamyl transferase levels | 5.000000e-09 |
| GCST006585_2690 | Blood protein levels | 1.000000e-06 |
| GCST006585_665 | Blood protein levels | 3.000000e-06 |
| GCST007269_219 | Pulse pressure | 3.000000e-08 |
| GCST007431_5 | Lung function (FEV1/FVC) | 4.000000e-12 |
| GCST007927_27 | Medication use (beta blocking agents) | 4.000000e-08 |
| GCST011349_10 | Gamma glutamyl transferase levels | 1.000000e-09 |
| GCST012489_137 | Heel bone mineral density x serum urate levels interaction | 2.000000e-08 |
| GCST90000047_144 | Age at first sexual intercourse | 4.000000e-10 |
| GCST90011898_146 | Alanine aminotransferase levels | 1.000000e-09 |
EFO canonical traits (14, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
| EFO:0005095 | PR segment |
| EFO:0004348 | hematocrit |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
| EFO:0005763 | pulse pressure measurement |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0009929 | Beta blocking agent use measurement |
| EFO:0004531 | urate measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0009749 | age at first sexual intercourse measurement |
MeSH disease descriptors (13)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006528 | Carcinoma, Hepatocellular | C04.557.470.200.025.255; C04.588.274.623.160; C06.301.623.160; C06.552.697.160 |
| D002292 | Carcinoma, Renal Cell | C04.557.470.200.025.390; C04.588.945.947.535.160; C12.050.351.937.820.535.160; C12.050.351.968.419.473.160; C12.200.758.820.750.160; C12.200.777.419.473.160; C12.900.820.535.160; C12.950.419.473.160; C12.950.983.535.160 |
| D018197 | Hepatoblastoma | C04.557.435.380 |
| D065630 | Hernias, Diaphragmatic, Congenital | C16.131.433; C23.300.707.960.500.116 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008209 | Lymphedema | C15.604.496 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D009447 | Neuroblastoma | C04.557.465.625.600.590.650.550; C04.557.470.670.590.650.550; C04.557.580.625.600.590.650.550 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| C564609 | Deafness, Autosomal Recessive (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) | |
| C563276 | Osteofibrous Dysplasia (supp.) | |
| C563787 | Tibia, Bowing of, with Pseudarthrosis and Pectus Excavatum (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (3): CHEMBL3717 (SINGLE PROTEIN), CHEMBL6195521 (PROTEIN-PROTEIN INTERACTION), CHEMBL6195562 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
95 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 256,286 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1173655 | AFATINIB | 4 | 15,144 |
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1289494 | TIVOZANIB | 4 | 4,455 |
| CHEMBL1289926 | AXITINIB | 4 | 15,732 |
| CHEMBL1336 | SORAFENIB | 4 | 86,060 |
| CHEMBL180022 | NERATINIB | 4 | 9,404 |
| CHEMBL1834657 | INFIGRATINIB PHOSPHATE | 4 | 285 |
| CHEMBL1852688 | INFIGRATINIB | 4 | 2,209 |
| CHEMBL189963 | PALBOCICLIB | 4 | 13,102 |
| CHEMBL1983268 | ENTRECTINIB | 4 | 3,510 |
| CHEMBL2028663 | DABRAFENIB | 4 | 12,430 |
| CHEMBL2103868 | CABOZANTINIB S-MALATE | 4 | 3,179 |
| CHEMBL2105712 | AFATINIB DIMALEATE | 4 | 3,215 |
| CHEMBL2105717 | CABOZANTINIB | 4 | 11,177 |
| CHEMBL2403108 | CERITINIB | 4 | 8,551 |
| CHEMBL24828 | VANDETANIB | 4 | 42,230 |
| CHEMBL288441 | BOSUTINIB | 4 | 12,255 |
| CHEMBL3188267 | CAPMATINIB | 4 | 2,884 |
| CHEMBL3402762 | TEPOTINIB | 4 | 1,276 |
| CHEMBL3545311 | BRIGATINIB | 4 | 5,634 |
| CHEMBL4113131 | ENSARTINIB | 4 | |
| CHEMBL477772 | PAZOPANIB | 4 | |
| CHEMBL502835 | NINTEDANIB | 4 | |
| CHEMBL535 | SUNITINIB | 4 | |
| CHEMBL553 | ERLOTINIB | 4 | |
| CHEMBL601719 | CRIZOTINIB | 4 | |
| CHEMBL608533 | MIDOSTAURIN | 4 | |
| CHEMBL939 | GEFITINIB | 4 | |
| CHEMBL1091644 | LINSITINIB | 3 | |
| CHEMBL1241855 | RIGOSERTIB | 3 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
3 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs40239 | MET | 0.00 | 0 | ||
| rs2237717 | MET | 0.00 | 0 | ||
| rs11762213 | MET | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Type X RTKs: HGF (hepatocyte growth factor) receptor family
Most potent curated ligand interactions (44 total), top 25:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| amivantamab | Binding | 10.4 | pKd |
| emibetuzumab | Binding | 10.0 | pKd |
| capmatinib | Inhibition | 9.89 | pIC50 |
| vilzemetkib | Inhibition | 9.76 | pIC50 |
| SGX-523 | Inhibition | 9.72 | pKd |
| telisotuzumab vedotin | Binding | 9.66 | pEC50 |
| gumarontinib | Inhibition | 9.38 | pIC50 |
| ensartinib | Inhibition | 9.13 | pIC50 |
| elzovantinib | Inhibition | 9.12 | pIC50 |
| cabozantinib | Inhibition | 8.9 | pIC50 |
| foretinib | Inhibition | 8.85 | pKd |
| crizotinib | Inhibition | 8.7 | pKi |
| MK-2461 | Inhibition | 8.6 | pIC50 |
| altiratinib | Inhibition | 8.57 | pIC50 |
| dalmelitinib | Inhibition | 8.54 | pIC50 |
| D6808 | Inhibition | 8.54 | pIC50 |
| vabametkib | Inhibition | 8.52 | pIC50 |
| tepotinib | Inhibition | 8.52 | pIC50 |
| GE-137 | Binding | 8.52 | pKd |
| BMS-777607 | Inhibition | 8.41 | pIC50 |
| PHA-665752 | Inhibition | 8.4 | pKi |
| onartuzumab | Binding | 8.37 | pIC50 |
| merestinib | Inhibition | 8.33 | pIC50 |
| AMG-337 | Inhibition | 8.3 | pIC50 |
| savolitinib | Inhibition | 8.3 | pIC50 |
Binding affinities (BindingDB)
995 measured of 1804 human assays (1804 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| N-[[6-(3,5-difluorophenyl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl]methyl]-7-[2-(1,2,4-triazol-1-yl)ethoxy]-1,5-naphthyridin-4-amine | KI | 0.1 nM | US-9066954: Fused heterocyclic derivatives and methods of use |
| (E)-N1-(3-fluoro-4-(6-methoxy-7-(3-(piperidin-1-yl)propoxy)quinoline-4-yloxy)phenyl)-N4-(propiophenone)thiosemicarbazone | IC50 | 0.2 nM | US-9783499: Quinoline derivatives and their applications |
| [(E)-1-[3-[(1S)-1-quinolin-6-ylethyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 0.2 nM | US-8497368: Heterocyclic hydrazone compounds |
| [(Z)-[amino-[3-(quinolin-6-ylmethyl)triazolo[4,5-b]pyrazin-5-yl]methylidene]amino]urea | IC50 | 0.2 nM | US-8497368: Heterocyclic hydrazone compounds |
| [(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]triazolo[4,5-b]pyrazin-5-yl]ethylideneamino]urea | IC50 | 0.2 nM | US-8497368: Heterocyclic hydrazone compounds |
| N-[4-[[2-(cyclopropanecarbonylamino)-4-pyridinyl]oxy]phenyl]-1,5-dimethyl-3-oxo-2-phenylpyrazole-4-carboxamide | KD | 0.21 nM | US-8975282: Substituted pyrazolone compounds and methods of use |
| 4-[[8-fluoro-6-(4-methylthiophen-2-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]methoxy]-7-methoxyquinoline | KI | 0.3 nM | US-9066954: Fused heterocyclic derivatives and methods of use |
| [(E)-1-[3-[(5,7-difluoroquinolin-6-yl)methyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 0.3 nM | US-8497368: Heterocyclic hydrazone compounds |
| [(E)-[3-(quinolin-6-ylmethyl)triazolo[4,5-b]pyrazin-5-yl]methylideneamino]urea | IC50 | 0.3 nM | US-8497368: Heterocyclic hydrazone compounds |
| 5,7-difluoro-6-[[6-(1-nitrosoethyl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl]methyl]quinoline | IC50 | 0.4 nM | US-8507676: Heterocyclic oxime compounds |
| [(E)-1-[3-[(5,7-difluoroquinolin-6-yl)methyl]imidazo[1,2-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 0.4 nM | US-8497368: Heterocyclic hydrazone compounds |
| [(E)-1-[3-[(1S)-1-quinolin-6-ylethyl]imidazo[1,2-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 0.4 nM | US-8497368: Heterocyclic hydrazone compounds |
| N-[(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]triazolo[4,5-b]pyrazin-5-yl]ethylideneamino]acetamide | IC50 | 0.4 nM | US-8497368: Heterocyclic hydrazone compounds |
| [(E)-1-[3-[(1R)-1-(5,7-difluoroquinolin-6-yl)ethyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino] carbamate | IC50 | 0.48 nM | US-8507676: Heterocyclic oxime compounds |
| N-[4-[[2-(cyclopropanecarbonylamino)-4-pyridinyl]oxy]-3-fluorophenyl]-1,5-dimethyl-3-oxo-2-phenylpyrazole-4-carboxamide | KD | 0.5 nM | US-8975282: Substituted pyrazolone compounds and methods of use |
| [(E)-1-[3-[1-(5,7-difluoroquinolin-6-yl)ethyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 0.5 nM | US-8497368: Heterocyclic hydrazone compounds |
| N-[(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]triazolo[4,5-b]pyrazin-5-yl]ethylideneamino]pyridine-4-carboxamide | IC50 | 0.5 nM | US-8497368: Heterocyclic hydrazone compounds |
| 2-fluoro-N-[(2R)-2-hydroxypropyl]-4-[7-(quinolin-6-ylmethyl)imidazo[1,2-b][1,2,4]triazin-2-yl]benzamide | IC50 | 0.55 nM | US-9221824: Imidazo[1,2-B][1,2,4]triazines as c-Met inhibitors |
| 2-chloro-N-methyl-4-[7-(quinolin-6-ylmethyl)imidazo[1,2-b][1,2,4]triazin-2-yl]benzamide | IC50 | 0.55 nM | US-9221824: Imidazo[1,2-B][1,2,4]triazines as c-Met inhibitors |
| 2-chloro-N-[(1S)-1-(5-methyl-1,2,4-oxadiazol-3-yl)ethyl]-4-[7-(quinolin-6-ylmethyl)imidazo[1,2-b][1,2,4]triazin-2-yl]benzamide | IC50 | 0.55 nM | US-9221824: Imidazo[1,2-B][1,2,4]triazines as c-Met inhibitors |
| N-methyl-5-[7-(quinolin-6-ylmethyl)imidazo[1,2-b][1,2,4]triazin-2-yl]pyridine-2-carboxamide | IC50 | 0.55 nM | US-9221824: Imidazo[1,2-B][1,2,4]triazines as c-Met inhibitors |
| N,2-dimethyl-4-[7-(quinolin-6-ylmethyl)imidazo[1,2-b][1,2,4]triazin-2-yl]benzamide | IC50 | 0.55 nM | US-9221824: Imidazo[1,2-B][1,2,4]triazines as c-Met inhibitors |
| 6-[[6-(4-methylthiophen-2-yl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl]methyl]quinoline | KI | 0.7 nM | US-9066954: Fused heterocyclic derivatives and methods of use |
| [(E)-1-[3-[difluoro(quinolin-6-yl)methyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 0.7 nM | US-8497368: Heterocyclic hydrazone compounds |
| 1-methyl-1-[(E)-1-[3-(quinolin-6-ylmethyl)triazolo[4,5-b]pyrazin-5-yl]ethylideneamino]urea | IC50 | 0.8 nM | US-8497368: Heterocyclic hydrazone compounds |
| 7-methoxy-N-[(6-phenyl-[1,2,4]triazolo[4,3-b][1,2,4]triazin-3-yl)methyl]-1,5-naphthyridin-4-amine | KI | 0.9 nM | US-9066954: Fused heterocyclic derivatives and methods of use |
| 3-[(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]triazolo[4,5-b]pyrazin-5-yl]ethylideneamino]-5-hydroxy-1H-imidazol-2-one | IC50 | 0.9 nM | US-8497368: Heterocyclic hydrazone compounds |
| 2,6-dimethyl-4-[3-(2-propan-2-yloxyethoxy)-1H-indazol-5-yl]-3,4-dihydropyridine-3,5-dicarbonitrile | IC50 | 1 nM | US-8551989: Substituted 4-(indazolyl)-1,4-dihydropyridines and methods of use thereof |
| 3-isocyano-2-methyl-4-(3-methyl-2H-indazol-5-yl)-4,7-dihydro-3H-furo[3,4-b]pyridin-5-one | IC50 | 1 nM | US-8759341: Bi- and tricyclic indazole-substituted 1,4-dihydropyridine derivatives and uses thereof |
| 6-[[8-fluoro-6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]sulfanyl]-N-(1-methylpiperidin-4-yl)quinolin-3-amine | IC50 | 1 nM | US-9062045: Triazolopyridine compounds |
| (3S)-1-[6-[[8-fluoro-6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]sulfanyl]quinolin-3-yl]-N,N-dimethylpyrrolidin-3-amine | IC50 | 1 nM | US-9062045: Triazolopyridine compounds |
| 3-[(3S,5R)-3,5-dimethylpiperazin-1-yl]-6-[[8-fluoro-6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]sulfanyl]quinoline | IC50 | 1 nM | US-9062045: Triazolopyridine compounds |
| 6-[[8-fluoro-6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]sulfanyl]-3-(4-methoxypiperidin-1-yl)quinoline | IC50 | 1 nM | US-9062045: Triazolopyridine compounds |
| 2-[[6-[[6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]sulfanyl]quinolin-3-yl]amino]ethanol | IC50 | 1 nM | US-9062045: Triazolopyridine compounds |
| 3-(4,4-difluoropiperidin-1-yl)-6-[[8-fluoro-6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-a]pyridin-3-yl]sulfanyl]quinoline | IC50 | 1 nM | US-9062045: Triazolopyridine compounds |
| US9073939, 3 | IC50 | 1 nM | US-9073939: Indazolyl-substituted dihydroisoxa-zolopyridines and methods of use thereof |
| 2-fluoro-5-[3-[[4-[5-[1-(2-hydroxyethyl)pyrazol-4-yl]pyrimidin-2-yl]morpholin-2-yl]methyl]triazolo[4,5-b]pyrazin-5-yl]benzonitrile | IC50 | 1 nM | US-9403831: Triazolopyrazine derivative and use thereof |
| 2-methyl-4-(3-methyl-2H-indazol-5-yl)-6-(trifluoromethyl)-1,4-dihydropyridine-3,5-dicarbonitrile | IC50 | 1 nM | US-9422263: Fluoro-substituted 3,5-dicyano-4-(1H-indazol-5-yl)-2,6-dimethyl-1,4-dihydropyridine derivatives and methods of use thereof |
| N-{3-fluoro-4-[(7-methoxyquinolin-4-yl)oxy]phenyl}-1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazole-4-carboxamide | KI | 1 nM | |
| N-{3-fluoro-4-[(7-methoxyquinolin-4-yl)oxy]phenyl}-1-[(2R)-2-hydroxypropyl]-5-methyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazole-4-carboxamide | KI | 1 nM | |
| 2-chloro-4-(3-{[(7-methoxyquinolin-4-yl)oxy]methyl}-[1,2,4]triazolo[4,3-a]pyridazin-6-yl)-N-methylbenzamide | IC50 | 1 nM | |
| 7-methoxy-4-{[6-(4-methylthiophen-2-yl)-[1,2,4]triazolo[4,3-a]pyridazin-3-yl]methoxy}quinoline | IC50 | 1 nM | |
| N-{4-[(2-amino-3-ethynylpyridin-4-yl)oxy]-3-fluorophenyl}-1-(4-fluorophenyl)-2-oxo-1,2-dihydropyridine-3-carboxamide | IC50 | 1 nM | |
| N-{4-[(2-amino-3-chloropyridin-4-yl)oxy]-3-fluorophenyl}-1-(4-fluorophenyl)-2-oxo-1,2-dihydropyridine-3-carboxamide | IC50 | 1 nM | |
| [(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]imidazo[1,2-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 1 nM | US-8497368: Heterocyclic hydrazone compounds |
| 1-[(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]imidazo[1,2-b]pyridazin-6-yl]ethylideneamino]-1-methylurea | IC50 | 1 nM | US-8497368: Heterocyclic hydrazone compounds |
| 1-[(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]imidazo[1,2-b]pyridazin-6-yl]ethylideneamino]imidazolidine-2,4-dione | IC50 | 1 nM | US-8497368: Heterocyclic hydrazone compounds |
| [(E)-1-[3-(quinolin-6-ylmethyl)-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino]urea | IC50 | 1 nM | US-8497368: Heterocyclic hydrazone compounds |
| 3-[(E)-1-[3-[(5,7-difluoroquinolin-6-yl)methyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]ethylideneamino]-1,3-oxazolidin-2-one | IC50 | 1 nM | US-8497368: Heterocyclic hydrazone compounds |
| methyl N-[(E)-1-[3-[(7-fluoroquinolin-6-yl)methyl]triazolo[4,5-b]pyrazin-5-yl]ethylideneamino]carbamate | IC50 | 1 nM | US-8497368: Heterocyclic hydrazone compounds |
ChEMBL bioactivities
6100 potent at pChembl≥5 of 6100 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.72 | IC50 | 0.019 | nM | CHEMBL5184459 |
| 10.46 | IC50 | 0.035 | nM | CHEMBL5174958 |
| 10.00 | Ki | 0.1 | nM | CHEMBL3668200 |
| 9.92 | IC50 | 0.12 | nM | CHEMBL3797911 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL3582305 |
| 9.89 | IC50 | 0.13 | nM | CAPMATINIB |
| 9.85 | IC50 | 0.14 | nM | ELZOVANTINIB |
| 9.72 | IC50 | 0.19 | nM | CHEMBL3797911 |
| 9.72 | IC50 | 0.19 | nM | CHEMBL6133512 |
| 9.72 | Kd | 0.19 | nM | SGX-523 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL2032280 |
| 9.70 | Kd | 0.2 | nM | CRIZOTINIB |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3674521 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3674540 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3674547 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL5832315 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL6188807 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL1802904 |
| 9.68 | Kd | 0.21 | nM | CHEMBL3703197 |
| 9.66 | IC50 | 0.22 | nM | CHEMBL5286745 |
| 9.62 | IC50 | 0.24 | nM | CHEMBL3797579 |
| 9.59 | IC50 | 0.26 | nM | CHEMBL5565127 |
| 9.59 | IC50 | 0.26 | nM | CHEMBL6168943 |
| 9.57 | Kd | 0.27 | nM | PHA-665752 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3674515 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3674541 |
| 9.52 | Ki | 0.3 | nM | CHEMBL3668185 |
| 9.52 | Kd | 0.3 | nM | CAPMATINIB |
| 9.52 | IC50 | 0.3 | nM | CHEMBL4061378 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL4104884 |
| 9.52 | EC50 | 0.3 | nM | PF-04217903 |
| 9.49 | IC50 | 0.32 | nM | CHEMBL2376640 |
| 9.48 | IC50 | 0.33 | nM | CHEMBL6152766 |
| 9.41 | IC50 | 0.39 | nM | CHEMBL6164718 |
| 9.40 | Ki | 0.4 | nM | CHEMBL2032026 |
| 9.40 | IC50 | 0.4 | nM | FORETINIB |
| 9.40 | IC50 | 0.4 | nM | MK-2461 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3674495 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3674505 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3674548 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL3651418 |
| 9.40 | IC50 | 0.4 | nM | CAPMATINIB |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4097173 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4070258 |
| 9.38 | IC50 | 0.42 | nM | CHEMBL3800471 |
| 9.37 | IC50 | 0.43 | nM | CHEMBL3800420 |
| 9.36 | IC50 | 0.44 | nM | CHEMBL4214018 |
| 9.35 | IC50 | 0.45 | nM | CHEMBL5575349 |
| 9.34 | IC50 | 0.46 | nM | CHEMBL3797579 |
| 9.34 | IC50 | 0.46 | nM | CHEMBL3797914 |
PubChem BioAssay actives
3371 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[[4-[5-(1-piperidin-4-ylpyrazol-4-yl)pyrimidin-2-yl]morpholin-2-yl]methyl]-6-pyridin-3-ylpyridazin-3-one | 1849624: Inhibition of human recombinant c-MET in presence of ATP by HTRF assay | ic50 | <0.0001 | uM |
| 2-fluoro-N-methyl-4-[3-(quinolin-6-ylmethyl)-[1,2,4]triazolo[4,3-b][1,2,4]triazin-6-yl]benzamide | 1229108: Inhibition of C-Met (unknown origin) using polu (Glu,Tyr)4:1 substrate after 30 mins incubation by multi-well spectrophotometry | ic50 | 0.0001 | uM |
| (11S)-16-amino-2-ethyl-6-fluoro-11-methyl-14-oxo-10-oxa-2,13,17,18,21-pentazatetracyclo[13.5.2.04,9.018,22]docosa-1(21),4(9),5,7,15(22),16,19-heptaene-5-carbonitrile | 2003522: Inhibition of MET (unknown origin) | ic50 | 0.0001 | uM |
| Capmatinib | 1276952: Inhibition of c-Met (unknown origin) | ic50 | 0.0001 | uM |
| Crizotinib | 1337142: Binding affinity to MET (unknown origin) | kd | 0.0002 | uM |
| 6-[difluoro-[6-(4-fluorophenyl)-[1,2,4]triazolo[4,3-b][1,2,4]triazin-3-yl]methyl]quinoline | 1297781: Inhibition of recombinant c-Met (unknown origin) using poly (Glu, Tyr) 4:1 as substrate incubated for 60 mins by ELISA | ic50 | 0.0002 | uM |
| 1-(2-morpholin-4-ylethyl)-3-[6-[(6-phenyl-[1,2,4]triazolo[4,3-b]pyridazin-3-yl)sulfanyl]-1,3-benzothiazol-2-yl]urea | 1942584: Inhibition of human MET H1094Y mutant incubated for 1 hrs by ELISA assay | ic50 | 0.0002 | uM |
| 6-[[6-(1-methylpyrazol-4-yl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl]sulfanyl]quinoline | 624794: Binding constant for MET kinase domain | kd | 0.0002 | uM |
| (3Z)-5-[(2,6-dichlorophenyl)methylsulfonyl]-3-[[3,5-dimethyl-4-[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidine-1-carbonyl]-1H-pyrrol-2-yl]methylidene]-1H-indol-2-one | 624794: Binding constant for MET kinase domain | kd | 0.0003 | uM |
| 3-(1-methylpyrazol-4-yl)-6-[1-(5-pyridin-4-yltriazolo[4,5-b]pyrazin-3-yl)ethyl]quinoline | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0003 | uM |
| 4-[3-[1-[5,7-difluoro-3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]-2-fluorobenzamide | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0003 | uM |
| N-[3-fluoro-4-[6-methoxy-7-(prop-2-enoylamino)naphthalen-1-yl]oxyphenyl]-2,3-dimethyl-5-oxo-4-phenylpyrazole-1-carboxamide | 2096125: Inhibition of N-terminal GST tagged human recombinant c-Met (956 to end residues) expressed in baculovirus infected Sf9 cells using Poly (4:1 Glu, Tyr) as substrate incubated for 60 mins in presence of ATP by ADP-Glo luminescent assay | ic50 | 0.0003 | uM |
| 2-[4-[3-(quinolin-6-ylmethyl)triazolo[4,5-b]pyrazin-5-yl]pyrazol-1-yl]ethanol | 1636783: Inhibition of c-Met kinase (unknown origin) assessed as decrease in phosphorylation of TK substrate-biotin peptide preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ec50 | 0.0003 | uM |
| 1-(2-hydroxyethyl)-N-[5-(7-methoxyquinolin-4-yl)oxy-2-pyridinyl]-5-methyl-3-oxo-2-phenylpyrazole-4-carboxamide | 662095: Inhibition of c-Met by HTRF assay | ki | 0.0004 | uM |
| 3-[3-(quinolin-6-ylmethyl)-[1,2,4]triazolo[4,3-b][1,2,4]triazin-6-yl]phenol | 1297781: Inhibition of recombinant c-Met (unknown origin) using poly (Glu, Tyr) 4:1 as substrate incubated for 60 mins by ELISA | ic50 | 0.0004 | uM |
| 2-[4-[3-[1-[5,7-difluoro-3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]pyrazol-1-yl]ethanol | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0004 | uM |
| 5,7-difluoro-3-(1-methylpyrazol-4-yl)-6-[1-[5-(1-methylpyrazol-4-yl)triazolo[4,5-b]pyrazin-3-yl]ethyl]quinoline | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0004 | uM |
| N-(2-aminophenyl)-4-[[4-[2-[3-(1-methylpyrazol-4-yl)-6-oxopyridazin-1-yl]ethoxy]quinolin-7-yl]oxymethyl]benzamide | 1379286: Inhibition of recombinant human His-tagged c-Met cytoplasmic domain (956 to 1390 residues) expressed in baculovirus expression system using poly (Glu,Tyr)4:1 as substrate after 60 mins by spectrophotometric analysis | ic50 | 0.0004 | uM |
| 6-[3-[difluoro(quinolin-6-yl)methyl]-[1,2,4]triazolo[4,3-b]pyridazin-6-yl]-1-[2-oxo-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-3,4-dihydroquinolin-2-one | 2088142: Inhibition of c-Met (unknown origin) preincubated for 10 mins followed by substrate and ATP addition measured after 50 mins by fluorescence based microtiter-plate reader analysis | ic50 | 0.0004 | uM |
| 1-N’-[3-fluoro-4-[6-methoxy-7-(3-morpholin-4-ylpropoxy)quinolin-4-yl]oxyphenyl]-1-N-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide | 1142763: Inhibition of c-Met (unknown origin) | ic50 | 0.0004 | uM |
| 14-[[[(2R)-1,4-dioxan-2-yl]methyl-methylsulfamoyl]amino]-5-(1-methylpyrazol-4-yl)-2-oxo-7-azatricyclo[9.4.0.03,8]pentadeca-1(11),3(8),4,6,9,12,14-heptaene | 1276952: Inhibition of c-Met (unknown origin) | ic50 | 0.0004 | uM |
| 6-(1-methylpyrazol-4-yl)-1-[6-(1-methylpyrazol-4-yl)imidazo[1,2-a]pyridin-3-yl]sulfonylpyrazolo[4,5-b]pyridine | 2003522: Inhibition of MET (unknown origin) | ic50 | 0.0005 | uM |
| 6-[difluoro-[6-(furan-2-yl)-[1,2,4]triazolo[4,3-b][1,2,4]triazin-3-yl]methyl]quinoline | 1297781: Inhibition of recombinant c-Met (unknown origin) using poly (Glu, Tyr) 4:1 as substrate incubated for 60 mins by ELISA | ic50 | 0.0005 | uM |
| 2-[4-[3-[1-[7-fluoro-3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]pyrazol-1-yl]ethanol | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0005 | uM |
| 4-bromo-3-[[2-(2,3-dihydro-1-benzofuran-5-yl)acetyl]diazenyl]-2-hydroxy-N-[3-[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]propyl]-1H-indole-6-carboxamide | 614836: Inhibition of human c-MET | ic50 | 0.0005 | uM |
| (3Z)-4-bromo-3-[[2-(2,3-dihydro-1-benzofuran-5-yl)acetyl]hydrazinylidene]-N-[4-[(2S)-2-(hydroxymethyl)pyrrolidin-1-yl]butyl]-1,2-dihydroindole-6-carboxamide | 1326920: Inhibition of C-Met in human S114 cells assessed as inhibition of HGF-stimulated autophosphorylation preincubated for 60 mins followed by HGF-stimulation measured after 15 minsby DELFIA method | ic50 | 0.0005 | uM |
| 2-[4-[3-[1-[3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]pyrazol-1-yl]ethanol | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0005 | uM |
| 3-(1-methylpyrazol-4-yl)-6-[1-[5-(1-methylpyrazol-4-yl)triazolo[4,5-b]pyrazin-3-yl]ethyl]quinoline | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0005 | uM |
| 2-fluoro-N-methyl-4-[3-[1-[3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]benzamide | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0005 | uM |
| 5,7-difluoro-3-(1-methylpyrazol-4-yl)-6-[1-(5-pyridin-4-yltriazolo[4,5-b]pyrazin-3-yl)ethyl]quinoline | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0005 | uM |
| N-hydroxy-7-[4-[2-[3-(1-methylpyrazol-4-yl)-6-oxopyridazin-1-yl]ethoxy]quinolin-7-yl]oxyheptanamide | 1379286: Inhibition of recombinant human His-tagged c-Met cytoplasmic domain (956 to 1390 residues) expressed in baculovirus expression system using poly (Glu,Tyr)4:1 as substrate after 60 mins by spectrophotometric analysis | ic50 | 0.0005 | uM |
| 1-(2-hydroxy-2-methylpropyl)-N-[5-(7-methoxyquinolin-4-yl)oxy-2-pyridinyl]-5-methyl-3-oxo-2-phenylpyrazole-4-carboxamide | 1798436: HTRF Kinase Inhibition Assay from Article 10.1021/jm800401t: “Discovery of a potent, selective, and orally bioavailable c-Met inhibitor: 1-(2-hydroxy-2-methylpropyl)-N-(5-(7-methoxyquinolin-4-yloxy)pyridin-2-yl)-5-methyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazole-4-carboxamide (AMG 458).” | ki | 0.0005 | uM |
| N-[5-(7-methoxyquinolin-4-yl)oxy-2-pyridinyl]-1-methyl-3-oxo-2-phenyl-5-pyridin-4-ylpyrazole-4-carboxamide | 662095: Inhibition of c-Met by HTRF assay | ki | 0.0006 | uM |
| N-[5-(7-methoxyquinolin-4-yl)oxy-2-pyridinyl]-1-methyl-3-oxo-2-phenyl-5-pyridin-2-ylpyrazole-4-carboxamide | 662095: Inhibition of c-Met by HTRF assay | ki | 0.0006 | uM |
| 6-[[6-(3-methoxyphenyl)-[1,2,4]triazolo[4,3-b][1,2,4]triazin-3-yl]methyl]quinoline | 1297781: Inhibition of recombinant c-Met (unknown origin) using poly (Glu, Tyr) 4:1 as substrate incubated for 60 mins by ELISA | ic50 | 0.0006 | uM |
| 2-fluoro-4-[3-[1-[7-fluoro-3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]benzamide | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0006 | uM |
| (E)-N-(2-aminophenyl)-3-[5-[[4-[2-[3-(1-methylpyrazol-4-yl)-6-oxopyridazin-1-yl]ethoxy]quinolin-7-yl]oxymethyl]-2-pyridinyl]prop-2-enamide | 1379286: Inhibition of recombinant human His-tagged c-Met cytoplasmic domain (956 to 1390 residues) expressed in baculovirus expression system using poly (Glu,Tyr)4:1 as substrate after 60 mins by spectrophotometric analysis | ic50 | 0.0006 | uM |
| N-[4-[(2-amino-3-chloro-4-pyridinyl)oxy]-3-fluorophenyl]-1-(4-methoxyphenyl)-2-oxoquinoline-3-carboxamide | 1632313: Inhibition of recombinant c-Met (unknown origin) using poly (Glu,Tyr)4:1 as substrate incubated for 60 mins by ELISA | ic50 | 0.0006 | uM |
| N-[3-fluoro-4-[6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinolin-4-yl]oxyphenyl]-4-oxo-1-phenylpyridazine-3-carboxamide | 1849620: Inhibition of c-MET (unknown origin) using FAM-labelled peptide as substrate incubated for 10 mins in presence of ATP by mobility shift assay | ic50 | 0.0006 | uM |
| 3-[(1S)-1-[3-(2-methoxyethoxy)quinolin-6-yl]ethyl]-5-(3-methyl-1,2-thiazol-5-yl)triazolo[4,5-c]pyridin-4-one | 1289769: Inhibition of recombinant MET (unknown origin) using gastrin peptide as substrate preincubated for 30 mins followed by substrate addition incubated for 60 mins by HTRF assay | ic50 | 0.0006 | uM |
| N-[5-(7-methoxyquinolin-4-yl)oxy-2-pyridinyl]-1-methyl-5-(2-methyl-1,3-thiazol-4-yl)-3-oxo-2-phenylpyrazole-4-carboxamide | 662095: Inhibition of c-Met by HTRF assay | ki | 0.0007 | uM |
| N-[5-(7-methoxyquinolin-4-yl)oxy-2-pyridinyl]-1-methyl-5-(5-methyl-1,2-oxazol-3-yl)-3-oxo-2-phenylpyrazole-4-carboxamide | 662095: Inhibition of c-Met by HTRF assay | ki | 0.0007 | uM |
| 6-[difluoro-[6-(1-propylpyrazol-4-yl)-[1,2,4]triazolo[4,3-b][1,2,4]triazin-3-yl]methyl]quinoline | 1297844: Inhibition of c-Met in human EBC-1 cells assessed as reduction in cell proliferation after 72 hrs by SRB or MTT assay | ic50 | 0.0007 | uM |
| 4-bromo-3-[[2-(2,3-dihydro-1-benzofuran-5-yl)acetyl]diazenyl]-2-hydroxy-N-[3-[(3R)-3-hydroxypyrrolidin-1-yl]propyl]-1H-indole-6-carboxamide | 614836: Inhibition of human c-MET | ic50 | 0.0007 | uM |
| 4-bromo-3-[[2-(2,3-dihydro-1-benzofuran-5-yl)acetyl]diazenyl]-2-hydroxy-N-(morpholin-4-ylmethyl)-1H-indole-6-carboxamide | 614836: Inhibition of human c-MET | ic50 | 0.0007 | uM |
| (3Z)-4-bromo-3-[[2-(2,3-dihydro-1-benzofuran-5-yl)acetyl]hydrazinylidene]-N-(2-morpholin-4-ylethyl)-1,2-dihydroindole-6-carboxamide | 1326920: Inhibition of C-Met in human S114 cells assessed as inhibition of HGF-stimulated autophosphorylation preincubated for 60 mins followed by HGF-stimulation measured after 15 minsby DELFIA method | ic50 | 0.0007 | uM |
| (3Z)-4-bromo-3-[[2-(2,3-dihydro-1-benzofuran-5-yl)acetyl]hydrazinylidene]-N-[4-[(3S)-3-hydroxypyrrolidin-1-yl]butyl]-1,2-dihydroindole-6-carboxamide | 1326920: Inhibition of C-Met in human S114 cells assessed as inhibition of HGF-stimulated autophosphorylation preincubated for 60 mins followed by HGF-stimulation measured after 15 minsby DELFIA method | ic50 | 0.0007 | uM |
| 7-fluoro-3-(1-methylpyrazol-4-yl)-6-[1-(5-pyridin-4-yltriazolo[4,5-b]pyrazin-3-yl)ethyl]quinoline | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0007 | uM |
| 2-fluoro-4-[3-[1-[3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]triazolo[4,5-b]pyrazin-5-yl]benzamide | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0007 | uM |
| 7-fluoro-3-(1-methylpyrazol-4-yl)-6-[1-[5-(1-methylpyrazol-4-yl)triazolo[4,5-b]pyrazin-3-yl]ethyl]quinoline | 1466273: Inhibition of c-MET (unknown origin) using TK substrate-biotin peptide as substrate preincubated for 5 to 10 mins followed by ATP addition measured after 30 mins by HTRF assay | ic50 | 0.0007 | uM |
CTD chemical–gene interactions
176 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Crizotinib | affects binding, decreases activity, decreases reaction, increases reaction, decreases response to substance (+7 more) | 10 |
| Valproic Acid | affects cotreatment, increases expression | 7 |
| sodium arsenite | affects expression, decreases expression, affects cotreatment, increases abundance, increases expression (+1 more) | 5 |
| 5-((2,6-dichlorobenzyl)sulfonyl)-3-((3,5-dimethyl-4-((2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl)carbonyl)-1H-pyrrol-2-yl)methylene)-1,3-dihydro-2H-indol-2-one | increases activity, increases phosphorylation, decreases phosphorylation, increases mutagenesis, increases reaction (+4 more) | 5 |
| Quercetin | decreases expression, decreases reaction, affects binding, increases reaction, increases expression (+1 more) | 4 |
| Tretinoin | decreases reaction, increases expression, decreases expression | 4 |
| Resveratrol | affects cotreatment, decreases expression, increases expression | 3 |
| Benzo(a)pyrene | decreases methylation, increases expression, decreases expression | 3 |
| Cadmium | increases abundance, increases ubiquitination, increases activity, increases expression | 3 |
| Tobacco Smoke Pollution | affects expression, decreases expression, increases expression | 3 |
| bisphenol A | increases expression, increases methylation | 2 |
| trichostatin A | increases expression | 2 |
| evodiamine | affects reaction, decreases reaction, increases phosphorylation, increases expression | 2 |
| ((3Z)-N-(3-chlorophenyl)-3-((3,5-dimethyl-4-((4-methylpiperazin-1-yl)carbonyl)-1H-pyrrol-2-yl)methylene)-N-methyl-2-oxo-2,3-dihydro-1H-indole-5-sulfonamide) | decreases reaction, increases phosphorylation, decreases activity | 2 |
| Erlotinib Hydrochloride | decreases phosphorylation, affects cotreatment | 2 |
| Arsenic Trioxide | decreases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Arsenic | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Diclofenac | increases expression, decreases expression | 2 |
| Lipopolysaccharides | increases expression, increases reaction, decreases reaction | 2 |
| Methotrexate | decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Plant Extracts | decreases reaction, increases phosphorylation, affects cotreatment, decreases expression | 2 |
| Aflatoxin B1 | decreases methylation, decreases expression | 2 |
| Cadmium Chloride | increases ubiquitination, decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| 1-(1-(imidazo(1,2-a)pyridin-6-yl)ethyl)-6-(1-methyl-1H-pyrazol-4-yl)-1H-(1,2,3)triazolo(4,5-b)pyrazine | decreases phosphorylation | 1 |
| osimertinib | decreases phosphorylation, decreases expression | 1 |
| A-1155463 | affects reaction, affects response to substance, decreases reaction, increases response to substance | 1 |
| licocoumarone | decreases expression | 1 |
ChEMBL screening assays
2015 unique, capped per target: 2005 binding, 6 functional, 4 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1003887 | Binding | Inhibition of MET | Discovery of pyrrolopyridine-pyridone based inhibitors of Met kinase: synthesis, X-ray crystallographic analysis, and biological activities. — J Med Chem |
| CHEMBL1963775 | Functional | PUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: MET | PubChem BioAssay data set |
| CHEMBL4313076 | ADMET | Inhibition of human c-MET using poly (Glu, Tyr)4:1 as substrate measured after 60 mins by ELISA relative to control | Discovery and Development of a Series of Pyrazolo[3,4-d]pyridazinone Compounds as the Novel Covalent Fibroblast Growth Factor Receptor Inhibitors by the Rational Drug Design. — J Med Chem |
Cellosaurus cell lines
64 cell lines: 52 cancer cell line, 7 spontaneously immortalized cell line, 3 transformed cell line, 2 hybrid cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0102 | SNU-638 | Cancer cell line | Male |
| CVCL_0D41 | NZM078 | Cancer cell line | Sex unspecified |
| CVCL_1263 | HCC2218 | Cancer cell line | Female |
| CVCL_1326 | Karpas-45 | Cancer cell line | Male |
| CVCL_1714 | SUP-T1 | Cancer cell line | Male |
| CVCL_1E03 | BC7 | Cancer cell line | Male |
| CVCL_1H35 | Sup-T1 Nef-ER 31 | Cancer cell line | Male |
| CVCL_5086 | SNU-719 | Cancer cell line | Male |
| CVCL_9647 | YCCEL1 | Cancer cell line | Male |
| CVCL_9662 | YCC-6 | Cancer cell line | Female |
Clinical trials (associated diseases)
326 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00414765 | PHASE4 | COMPLETED | Aldesleukin in Participants With Metastatic Renal Cell Carcinoma or Metastatic Melanoma |
| NCT00777504 | PHASE4 | UNKNOWN | Study to the Optimal Duration of Therapy With Oral Angiogenesis Inhibitors |
| NCT00930345 | PHASE4 | TERMINATED | Biological, Pathological and Imagery Markers in the First-line Treatment of Metastatic Clear-cell Renal Cell Carcinoma |
| NCT01206764 | PHASE4 | COMPLETED | A Trial of Everolimis in Patients With Advanced Renal Cell Carcinoma. |
| NCT01266837 | PHASE4 | COMPLETED | Open Label, Single Arm Trial to Characterize Patients With Metastatic RCC Treated With Everolimus After Failure of the First VEGF-targeted Therapy (MARC-2) |
| NCT02056587 | PHASE4 | COMPLETED | Everolimus in Patients With Metastatic Renal Cell Carcinoma Following Progression on Prior Bevacizumab Treatment |
| NCT02338570 | PHASE4 | TERMINATED | Outcome-related Factors in Patients With Metastatic Renal Cell Carcinoma Treated With Everolimus (ORCHIDEE) |
| NCT02596035 | PHASE4 | COMPLETED | An Investigational Immuno-therapy Safety Trial of Nivolumab in Patients With Advanced or Metastatic Renal Cell Carcinoma |
| NCT02982954 | PHASE4 | COMPLETED | A Study to Evaluate the Safety of Nivolumab and Ipilimumab in Subjects With Previously Untreated Advanced or Metastatic Renal Cell Cancer |
| NCT05949424 | PHASE4 | UNKNOWN | OPTI - DOSE: Optimal Dosing of Oral Anticancer Drugs in Older Adults |
| NCT07028125 | PHASE4 | RECRUITING | Digital Monitoring of Self-reported Symptoms by Patients Treated With Cabozantinib Plus Nivolumab for Advanced Clear-cell Renal Carcinoma |
| NCT07405086 | PHASE4 | RECRUITING | Morning Versus Afternoon Administration of Immunotherapy for the Treatment of Advanced or Metastatic Solid Tumors, The Knight SHIFT Study |
| NCT05043090 | PHASE3 | ACTIVE_NOT_RECRUITING | Savolitinib Plus Durvalumab Versus Sunitinib and Durvalumab Monotherapy in MET-Driven, Unresectable and Locally Advanced or Metastatic PRCC |
| NCT06146777 | PHASE3 | NOT_YET_RECRUITING | Multi-classifier System for Stratifying Stage III Papillary Renal Cell Carcinoma of Receiving Adjuvant Therapy |
| NCT00033904 | PHASE3 | COMPLETED | Survival Study Of Oncophage® vs. Observation In Patients With Kidney Cancer |
| NCT00126178 | PHASE3 | TERMINATED | Clinical Trial Studying a Personalized Cancer Vaccine in Patients With Non-metastatic Kidney Cancer |
| NCT00291369 | PHASE3 | COMPLETED | Cytokines in Patients With Metastatic Renal Cell Carcinoma of Intermediate Prognosis |
| NCT00410124 | PHASE3 | COMPLETED | RAD001 Plus Best Supportive Care (BSC) Versus BSC Plus Placebo in Patients With Metastatic Carcinoma of the Kidney Which Has Progressed After Treatment With Sorafenib and/or Sunitinib |
| NCT00474786 | PHASE3 | COMPLETED | Temsirolimus Versus Sorafenib As Second-Line Therapy In Patients With Advanced RCC Who Have Failed First-Line Sunitinib |
| NCT00478114 | PHASE3 | COMPLETED | Efficacy and Safety of Sorafenib in Advanced Renal Cell Carcinoma (RCC) |
| NCT00606632 | PHASE3 | COMPLETED | Pre-surgical Detection of Clear Cell Renal Cell Carcinoma (ccRCC) Using Radiolabeled G250-Antibody |
| NCT00606866 | PHASE3 | COMPLETED | MRI Study of BAY 43-9006 in Metastatic Renal Cell Carcinoma |
| NCT00631371 | PHASE3 | COMPLETED | Study Comparing Bevacizumab + Temsirolimus vs. Bevacizumab + Interferon-Alfa In Advanced Renal Cell Carcinoma Subjects |
| NCT00732914 | PHASE3 | COMPLETED | Sequential Study to Treat Renal Cell Carcinoma |
| NCT00869011 | PHASE3 | UNKNOWN | Exercise for Patients With Renal Cell Cancer Receiving Sunitinib |
| NCT00930033 | PHASE3 | COMPLETED | Clinical Trial to Assess the Importance of Nephrectomy |
| NCT01030783 | PHASE3 | COMPLETED | A Study to Compare Tivozanib (AV-951) to Sorafenib in Subjects With Advanced Renal Cell Carcinoma |
| NCT01076010 | PHASE3 | COMPLETED | An Extension Treatment Protocol for Subjects Who Have Participated in a Study of Tivozanib Versus Sorafenib in Kidney Carcinoma (Protocol AV-951-09-301). |
| NCT01198158 | PHASE3 | TERMINATED | Everolimus With or Without Bevacizumab in Treating Patients With Advanced Kidney Cancer That Progressed After First-Line Therapy |
| NCT01223027 | PHASE3 | COMPLETED | Study of Dovitinib Versus Sorafenib in Patients With Metastatic Renal Cell Carcinoma |
| NCT01224288 | PHASE3 | ACTIVE_NOT_RECRUITING | Dynamic Contrast Enhancement Computed Tomography for Evaluating Tumor Perfusion in Patients With Metastatic Renal Cell Carcinoma Receiving Targeted Therapies: Renal Cell Carcinoma (RCC) Scramble |
| NCT01235962 | PHASE3 | COMPLETED | A Study to Evaluate Pazopanib as an Adjuvant Treatment for Localized Renal Cell Carcinoma (RCC) |
| NCT01265810 | PHASE3 | COMPLETED | Caphosol in Oral Mucositis Due to Targeted Therapy |
| NCT01265901 | PHASE3 | COMPLETED | IMA901 in Patients Receiving Sunitinib for Advanced/Metastatic Renal Cell Carcinoma |
| NCT01481870 | PHASE3 | UNKNOWN | Comparison of Sequential Therapies With Sunitinib and Sorafenib in Advanced Renal Cell Carcinoma |
| NCT01582672 | PHASE3 | TERMINATED | Phase 3 Trial of Autologous Dendritic Cell Immunotherapy Plus Standard Treatment of Advanced Renal Cell Carcinoma |
| NCT01613846 | PHASE3 | COMPLETED | Phase III Sequential Open-label Study to Evaluate the Efficacy and Safety of Sorafenib Followed by Pazopanib Versus Pazopanib Followed by Sorafenib in the Treatment of Advanced / Metastatic Renal Cell Carcinoma (SWITCH-II) |
| NCT01762592 | PHASE3 | WITHDRAWN | REDECT 2: REnal Masses: Pivotal Trial to DEteCT Clear Cell Renal Cell Carcinoma With PET/CT |
| NCT01865747 | PHASE3 | COMPLETED | A Study of Cabozantinib (XL184) vs Everolimus in Subjects With Metastatic Renal Cell Carcinoma |
| NCT02231749 | PHASE3 | COMPLETED | Nivolumab Combined With Ipilimumab Versus Sunitinib in Previously Untreated Advanced or Metastatic Renal Cell Carcinoma (CheckMate 214) |
Related Atlas pages
- Associated diseases: hereditary papillary renal cell carcinoma, osteofibrous dysplasia, autosomal recessive nonsyndromic hearing loss 97, arthrogryposis, distal, IIa 11, papillary renal cell carcinoma, hearing loss, autosomal recessive, complex neurodevelopmental disorder, nonsyndromic genetic hearing loss
- Targeted by drugs: Alectinib, Amivantamab, Cabozantinib, Capmatinib, Crizotinib, Ensartinib, Onartuzumab, Savolitinib, Sitravatinib, Telisotuzumab Vedotin, Tepotinib, Terevalefim, Tivantinib, Zanzalintinib
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arthrogryposis, distal, IIa 11, arthrogryposis, distal, type 1A, autosomal recessive nonsyndromic hearing loss 97, classic Hodgkin lymphoma, congenital diaphragmatic hernia, congenital fibrosarcoma, hearing loss, autosomal recessive, hepatoblastoma, hepatocellular carcinoma, hereditary papillary renal cell carcinoma, lymphedema, neuroblastoma, osteofibrous dysplasia, papillary renal cell carcinoma, pediatric hepatocellular carcinoma, renal cell carcinoma