METTL21A
gene geneOn this page
Also known as LOC151194HCA557bHSPA-KMT
Summary
METTL21A (methyltransferase 21A, HSPA lysine, HGNC:30476) is a protein-coding gene on chromosome 2q33.3, encoding Protein N-lysine methyltransferase METTL21A (Q8WXB1). Protein-lysine methyltransferase that selectively trimethylates residues in heat shock protein 70 (HSP70) family members.
Enables ATPase binding activity; Hsp70 protein binding activity; and protein-lysine N-methyltransferase activity. Involved in peptidyl-lysine methylation. Part of protein-containing complex.
Source: NCBI Gene 151194 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 30 total
- Druggable target: yes
- MANE Select transcript:
NM_001127395
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30476 |
| Approved symbol | METTL21A |
| Name | methyltransferase 21A, HSPA lysine |
| Location | 2q33.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LOC151194, HCA557b, HSPA-KMT |
| Ensembl gene | ENSG00000144401 |
| Ensembl biotype | protein_coding |
| OMIM | 615257 |
| Entrez | 151194 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 19 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000272839, ENST00000406927, ENST00000411432, ENST00000425132, ENST00000426075, ENST00000432416, ENST00000442521, ENST00000448007, ENST00000448823, ENST00000458426, ENST00000461419, ENST00000471128, ENST00000477919, ENST00000861060, ENST00000861061, ENST00000861062, ENST00000861063, ENST00000861064, ENST00000921189, ENST00000921190, ENST00000921191, ENST00000951163
RefSeq mRNA: 25 — MANE Select: NM_001127395
NM_001127395, NM_001308021, NM_001330130, NM_001330131, NM_001330132, NM_001330133, NM_001330134, NM_001330135, NM_001330136, NM_001330137, NM_001388427, NM_001388439, NM_001393563, NM_001393564, NM_001393565, NM_001393566, NM_001393567, NM_001393569, NM_001393570, NM_001393571, NM_001393572, NM_001393573, NM_001393574, NM_001393575, NM_145280
CCDS: CCDS2376, CCDS77514, CCDS82562, CCDS82563
Canonical transcript exons
ENST00000411432 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001623898 | 207625062 | 207625394 |
| ENSE00001804558 | 207612739 | 207613443 |
| ENSE00003460231 | 207624229 | 207624404 |
| ENSE00003571470 | 207621806 | 207621917 |
Expression profiles
Bgee: expression breadth ubiquitous, 241 present calls, max score 98.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.8683 / max 58.3984, expressed in 1756 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 33408 | 3.9625 | 1648 |
| 33409 | 3.1973 | 1179 |
| 33407 | 0.8808 | 404 |
| 33410 | 0.8277 | 450 |
Top tissues by expression
253 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oocyte | CL:0000023 | 98.10 | gold quality |
| secondary oocyte | CL:0000655 | 97.47 | gold quality |
| monocyte | CL:0000576 | 89.86 | gold quality |
| leukocyte | CL:0000738 | 89.76 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 88.02 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.95 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 87.28 | gold quality |
| prefrontal cortex | UBERON:0000451 | 87.22 | gold quality |
| spinal cord | UBERON:0002240 | 86.97 | gold quality |
| right lobe of liver | UBERON:0001114 | 86.78 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 86.24 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 86.19 | gold quality |
| granulocyte | CL:0000094 | 86.09 | gold quality |
| adrenal tissue | UBERON:0018303 | 85.97 | gold quality |
| putamen | UBERON:0001874 | 85.87 | gold quality |
| bone marrow | UBERON:0002371 | 85.87 | gold quality |
| caudate nucleus | UBERON:0001873 | 85.84 | gold quality |
| biceps brachii | UBERON:0001507 | 85.81 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 85.81 | gold quality |
| hypothalamus | UBERON:0001898 | 85.56 | gold quality |
| ventricular zone | UBERON:0003053 | 85.26 | gold quality |
| calcaneal tendon | UBERON:0003701 | 85.26 | gold quality |
| lymph node | UBERON:0000029 | 84.75 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 84.74 | silver quality |
| right frontal lobe | UBERON:0002810 | 84.73 | gold quality |
| bone marrow cell | CL:0002092 | 84.72 | gold quality |
| amygdala | UBERON:0001876 | 84.67 | gold quality |
| nucleus accumbens | UBERON:0001882 | 84.63 | gold quality |
| neocortex | UBERON:0001950 | 84.51 | gold quality |
| frontal cortex | UBERON:0001870 | 84.49 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
149 targeting METTL21A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-613 | 99.91 | 71.50 | 1710 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
Literature-anchored findings (GeneRIF, showing 2)
- METTL21A trimethylates Lys-561 in Hsp70 and corresponding residues in other isoforms (Hsc70, BiP) (PMID:23349634)
- methyltransferase METTL21A is the enzyme responsible for trimethylation of a conserved lysine residue found in several human Hsp70 (HSPA) proteins (PMID:23921388)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mettl21a | ENSDARG00000012051 |
| mus_musculus | Mettl21a | ENSMUSG00000025956 |
| rattus_norvegicus | Mettl21a | ENSRNOG00000014212 |
Paralogs (5): VCPKMT (ENSG00000100483), EEF1AKMT3 (ENSG00000123427), METTL21C (ENSG00000139780), METTL23 (ENSG00000181038), METTL21EP (ENSG00000250878)
Protein
Protein identifiers
Protein N-lysine methyltransferase METTL21A — Q8WXB1 (reviewed: Q8WXB1)
Alternative names: HSPA lysine methyltransferase, HSPA-KMT, Hepatocellular carcinoma-associated antigen 557b, Methyltransferase-like protein 21A
All UniProt accessions (4): Q8WXB1, C9JES0, C9JSX1, H7BXH9
UniProt curated annotations — full annotation on UniProt →
Function. Protein-lysine methyltransferase that selectively trimethylates residues in heat shock protein 70 (HSP70) family members. Contributes to the in vivo trimethylation of Lys residues in HSPA1 and HSPA8. In vitro methylates ‘Lys-561’ in HSPA1, ‘Lys-564’ in HSPA2, ‘Lys-585’ in HSPA5, ‘Lys-563’ in HSPA6 and ‘Lys-561’ in HSPA8.
Subunit / interactions. Interacts with heat shock protein 70 family members; at least some of these proteins are methylation substrates.
Subcellular location. Cytoplasm.
Similarity. Belongs to the methyltransferase superfamily. METTL21 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WXB1-1 | 1 | yes |
| Q8WXB1-2 | 2 |
RefSeq proteins (25): NP_001120867, NP_001294950, NP_001317059, NP_001317060, NP_001317061, NP_001317062, NP_001317063, NP_001317064, NP_001317065, NP_001317066, NP_001375356, NP_001375368, NP_001380492, NP_001380493, NP_001380494, NP_001380495, NP_001380496, NP_001380498, NP_001380499, NP_001380500, NP_001380501, NP_001380502, NP_001380503, NP_001380504, NP_660323 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR019410 | Methyltransf_16 | Family |
| IPR029063 | SAM-dependent_MTases_sf | Homologous_superfamily |
Pfam: PF10294
Catalyzed reactions (Rhea), 1 shown:
- L-lysyl-[protein] + 3 S-adenosyl-L-methionine = N(6),N(6),N(6)-trimethyl-L-lysyl-[protein] + 3 S-adenosyl-L-homocysteine + 3 H(+) (RHEA:54192)
UniProt features (32 total): helix 10, strand 9, binding site 5, turn 2, splice variant 2, chain 1, sequence conflict 1, sequence variant 1, mutagenesis site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4LEC | X-RAY DIFFRACTION | 2.28 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WXB1-F1 | 91.57 | 0.85 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 47; 73–75; 94; 125; 143
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 94 | abolishes methyltransferase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-8876725 | Protein methylation |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-597592 | Post-translational protein modification |
MSigDB gene sets: 140 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE45365_NK_CELL_VS_CD8A_DC_DN, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_PROTEIN_MATURATION, BILD_E2F3_ONCOGENIC_SIGNATURE, GOBP_PROTEIN_FOLDING, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_METHYLATION, MARSON_BOUND_BY_FOXP3_UNSTIMULATED, LEE_RECENT_THYMIC_EMIGRANT, GOMF_HEAT_SHOCK_PROTEIN_BINDING, GOMF_N_METHYLTRANSFERASE_ACTIVITY, GOMF_PROTEIN_METHYLTRANSFERASE_ACTIVITY, GOMF_ATPASE_BINDING, GOMF_PROTEIN_FOLDING_CHAPERONE_BINDING
GO Biological Process (3): protein methylation (GO:0006479), negative regulation of protein folding (GO:1903333), methylation (GO:0032259)
GO Molecular Function (8): protein methyltransferase activity (GO:0008276), protein-lysine N-methyltransferase activity (GO:0016279), Hsp70 protein binding (GO:0030544), heat shock protein binding (GO:0031072), ATPase binding (GO:0051117), protein binding (GO:0005515), methyltransferase activity (GO:0008168), transferase activity (GO:0016740)
GO Cellular Component (4): nucleoplasm (GO:0005654), cytosol (GO:0005829), protein-containing complex (GO:0032991), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Post-translational protein modification | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein alkylation | 1 |
| macromolecule methylation | 1 |
| protein folding | 1 |
| negative regulation of cellular process | 1 |
| regulation of protein folding | 1 |
| metabolic process | 1 |
| methyltransferase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| protein methyltransferase activity | 1 |
| lysine N-methyltransferase activity | 1 |
| heat shock protein binding | 1 |
| protein-folding chaperone binding | 1 |
| protein binding | 1 |
| enzyme binding | 1 |
| binding | 1 |
| transferase activity, transferring one-carbon groups | 1 |
| catalytic activity | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| cellular_component | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
562 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| METTL21A | METTL22 | Q9BUU2 | 797 |
| METTL21A | METTL18 | O95568 | 735 |
| METTL21A | EEF1AKMT2 | Q5JPI9 | 735 |
| METTL21A | ETFBKMT | Q8IXQ9 | 716 |
| METTL21A | KIN | O60870 | 687 |
| METTL21A | EEF2KMT | Q96G04 | 674 |
| METTL21A | EEF1AKMT1 | Q8WVE0 | 666 |
| METTL21A | CAMKMT | Q7Z624 | 649 |
| METTL21A | CCNYL1 | Q8N7R7 | 565 |
| METTL21A | NTMT1 | Q9BV86 | 537 |
| METTL21A | METTL13 | Q8N6R0 | 536 |
| METTL21A | VCP | P55072 | 519 |
| METTL21A | CSKMT | A8MUP2 | 501 |
| METTL21A | EEF1AKMT4 | P0DPD7 | 500 |
| METTL21A | ANTKMT | Q9BQD7 | 489 |
IntAct
47 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| METTL21A | FAM200C | psi-mi:“MI:0915”(physical association) | 0.740 |
| FAM200C | METTL21A | psi-mi:“MI:0915”(physical association) | 0.740 |
| LNX1 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.670 |
| METTL21A | LNX1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ATRIP | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | ATRIP | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF655 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | ZNF620 | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | MEI4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | ZNF655 | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | LZTS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MEOX2 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | ZRANB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | PFDN5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MSRB3 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF620 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| MEI4 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| ARPC4 | METTL21A | psi-mi:“MI:0915”(physical association) | 0.560 |
| METTL21A | BAG3 | psi-mi:“MI:0914”(association) | 0.530 |
| hspa1a_hspa1b_human-1 | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| METTL21A | BAG2 | psi-mi:“MI:0914”(association) | 0.350 |
| METTL21A | HSPA4L | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (56): METTL21A (Two-hybrid), METTL21A (Two-hybrid), HSPA8 (Affinity Capture-MS), HSPA4 (Affinity Capture-MS), ZBED8 (Two-hybrid), HSPA8 (Affinity Capture-MS), HSPBP1 (Affinity Capture-MS), BAG3 (Affinity Capture-MS), HSPA4 (Affinity Capture-MS), SSA1 (Biochemical Activity), SSA3 (Biochemical Activity), HSPA8 (Biochemical Activity), METTL21A (Two-hybrid), METTL21A (Two-hybrid), METTL21A (Two-hybrid)
ESM2 similar proteins: A2RU49, A3KCL7, A4FV42, A7MBI7, A7RDN6, D3ZDM7, D3ZLY0, O88587, O95671, P11172, P13439, P13676, P13798, P17256, P21964, P22734, P25409, P31228, P31754, P51175, P80227, Q03426, Q0V8R7, Q14CH1, Q29RU9, Q3TY86, Q4JIJ2, Q5E9T8, Q5H879, Q5R514, Q5U2W9, Q6GM82, Q86TI2, Q86WA6, Q8BGT5, Q8BVG4, Q8QZR5, Q8R164, Q8WXB1, Q922Z0
Diamond homologs: A2AA28, A4FV42, A4FV98, A4IGU3, D3YWP0, O14118, Q28IN4, Q5BLD8, Q5RE14, Q5RJL2, Q6DJF8, Q86XA0, Q8CDZ2, Q8WXB1, Q96AZ1, Q9CQL0, A6NDL7, A6QP81, A7IQW5, P0CU27, P53970, Q2KIJ2, Q58DC7, Q5VZV1, Q8BLU2, Q8C436, Q8R1C6, Q9BUU2, Q9H867, F4JNX3, O95568, P40389, P47163, Q4KM84, Q55DL2, Q9CZ09, Q7S634, P0CP44, P0CP45, P64840
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
30 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 25 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
964 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:207625060:ACC:A | donor_gain | 1.0000 |
| 2:207625061:CCC:C | donor_gain | 1.0000 |
| 2:207625090:T:TA | donor_gain | 1.0000 |
| 2:207613056:T:TA | donor_gain | 0.9900 |
| 2:207624224:CTTA:C | donor_gain | 0.9900 |
| 2:207624225:TTA:T | donor_loss | 0.9900 |
| 2:207624226:TACCG:T | donor_loss | 0.9900 |
| 2:207624227:A:AC | donor_gain | 0.9900 |
| 2:207624227:A:C | donor_loss | 0.9900 |
| 2:207624228:C:CA | donor_loss | 0.9900 |
| 2:207624228:C:CC | donor_gain | 0.9900 |
| 2:207624228:CCG:C | donor_gain | 0.9900 |
| 2:207624294:T:C | acceptor_gain | 0.9900 |
| 2:207624294:T:TC | acceptor_gain | 0.9900 |
| 2:207625061:CCCCT:C | donor_gain | 0.9900 |
| 2:207596912:A:AG | acceptor_gain | 0.9800 |
| 2:207596912:AG:A | acceptor_gain | 0.9800 |
| 2:207596913:G:GG | acceptor_gain | 0.9800 |
| 2:207596913:GG:G | acceptor_gain | 0.9800 |
| 2:207621804:AC:A | donor_gain | 0.9800 |
| 2:207621805:CC:C | donor_gain | 0.9800 |
| 2:207624403:ACCTG:A | acceptor_loss | 0.9800 |
| 2:207624404:CCTGC:C | acceptor_loss | 0.9800 |
| 2:207624405:CTGC:C | acceptor_loss | 0.9800 |
| 2:207624406:T:A | acceptor_loss | 0.9800 |
| 2:207625060:AC:A | donor_gain | 0.9800 |
| 2:207625061:CC:C | donor_gain | 0.9800 |
| 2:207625170:AGGAT:A | donor_gain | 0.9800 |
| 2:207596908:TTGTA:T | acceptor_loss | 0.9700 |
| 2:207596909:TGTA:T | acceptor_loss | 0.9700 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000146686 (2:207598956 C>G,T), RS1000180340 (2:207621257 A>T), RS1000195748 (2:207620975 A>G), RS1000408351 (2:207614759 A>T), RS1000480716 (2:207619164 A>G), RS1000502749 (2:207586319 A>G), RS1000512868 (2:207619586 C>T), RS1000793142 (2:207612972 A>G), RS1000804015 (2:207591328 C>G,T), RS1000888066 (2:207584847 T>G), RS1000954407 (2:207625502 C>A,G,T), RS1001006886 (2:207625794 G>A), RS1001067516 (2:207592545 T>C), RS1001168967 (2:207591427 GTTTTGT>G), RS1001253481 (2:207584513 C>G,T)
Disease associations
OMIM: gene MIM:615257 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001751_1 | Opioid sensitivity | 8.000000e-07 |
| GCST002337_115 | Amyotrophic lateral sclerosis (sporadic) | 2.000000e-07 |
| GCST004279_34 | Systolic blood pressure | 6.000000e-16 |
| GCST004776_34 | Systolic blood pressure | 9.000000e-11 |
| GCST004776_84 | Systolic blood pressure | 1.000000e-07 |
| GCST007267_294 | Systolic blood pressure | 1.000000e-10 |
| GCST010242_253 | HDL cholesterol levels | 1.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006335 | systolic blood pressure |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3588741 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs7569963 | Efficacy,Toxicity | 3 | antidepressants;citalopram | Depression |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs7569963 | CREB1, METTL21A | 3 | 5.00 | 1 | antidepressants;citalopram |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 6 |
| trichostatin A | affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol A | affects cotreatment, decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| hydroquinone | decreases expression | 1 |
| avobenzone | increases expression | 1 |
| entinostat | affects cotreatment, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | decreases expression, increases response to substance | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Bortezomib | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Panobinostat | affects cotreatment, decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Gasoline | affects cotreatment, increases abundance, increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
8 unique, capped per target: 8 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3592419 | Binding | Inhibition of METTL21A (unknown origin) assessed as incorporation of tritium labeled methyl group from [3H]-SAM to substrate at 1 uM after 1 hr by scintillation proximity assay relative to control | Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2. — ACS Med Chem Lett |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.