MEX3B
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Also known as DKFZp434J0617RNF195
Summary
MEX3B (mex-3 RNA binding family member B, HGNC:25297) is a protein-coding gene on chromosome 15q25.2, encoding RNA-binding protein MEX3B (Q6ZN04). RNA-binding protein.
This gene encodes an RNA-binding phosphoprotein that is part of the MEX3 (muscle excess 3) family of translational regulators. The encoded protein contains N-terminal nuclear export and nuclear localization signals and is exported from the cytoplasm to the nucleus. The protein binds to RNA via two KH domains and also colocalizes with MEX3A, Dcp1A decapping factor and Argonaute proteins within P (processing) bodies.
Source: NCBI Gene 84206 — RefSeq curated summary.
At a glance
- GWAS associations: 8
- Clinical variants (ClinVar): 96 total
- MANE Select transcript:
NM_032246
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25297 |
| Approved symbol | MEX3B |
| Name | mex-3 RNA binding family member B |
| Location | 15q25.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp434J0617, RNF195 |
| Ensembl gene | ENSG00000183496 |
| Ensembl biotype | protein_coding |
| OMIM | 611008 |
| Entrez | 84206 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000329713, ENST00000558133
RefSeq mRNA: 1 — MANE Select: NM_032246
NM_032246
CCDS: CCDS10319
Canonical transcript exons
ENST00000329713 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001316983 | 82041778 | 82044613 |
| ENSE00001418046 | 82045450 | 82046018 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 97.98.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.3084 / max 287.8475, expressed in 1550 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 151242 | 6.8317 | 1352 |
| 151235 | 0.5080 | 247 |
| 151244 | 0.2174 | 87 |
| 151243 | 0.1963 | 78 |
| 151239 | 0.1712 | 47 |
| 151236 | 0.1151 | 45 |
| 151240 | 0.0882 | 31 |
| 151241 | 0.0750 | 37 |
| 151237 | 0.0556 | 17 |
| 151238 | 0.0499 | 17 |
Top tissues by expression
249 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 97.98 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.63 | gold quality |
| right testis | UBERON:0004534 | 92.59 | gold quality |
| left testis | UBERON:0004533 | 92.58 | gold quality |
| cortical plate | UBERON:0005343 | 92.38 | gold quality |
| testis | UBERON:0000473 | 89.76 | gold quality |
| ventricular zone | UBERON:0003053 | 84.79 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.76 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.81 | gold quality |
| stromal cell of endometrium | CL:0002255 | 76.93 | gold quality |
| endocervix | UBERON:0000458 | 76.87 | gold quality |
| adult organism | UBERON:0007023 | 74.14 | gold quality |
| ectocervix | UBERON:0012249 | 71.89 | gold quality |
| left ovary | UBERON:0002119 | 71.58 | gold quality |
| body of uterus | UBERON:0009853 | 71.53 | gold quality |
| uterine cervix | UBERON:0000002 | 71.09 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 69.88 | gold quality |
| right ovary | UBERON:0002118 | 69.86 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 69.65 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 69.21 | gold quality |
| cerebellar cortex | UBERON:0002129 | 69.11 | gold quality |
| prefrontal cortex | UBERON:0000451 | 68.62 | gold quality |
| gall bladder | UBERON:0002110 | 68.62 | gold quality |
| apex of heart | UBERON:0002098 | 68.60 | gold quality |
| ovary | UBERON:0000992 | 68.36 | gold quality |
| cerebellum | UBERON:0002037 | 67.75 | gold quality |
| endometrium | UBERON:0001295 | 67.40 | gold quality |
| uterus | UBERON:0000995 | 67.22 | gold quality |
| heart left ventricle | UBERON:0002084 | 67.03 | gold quality |
| right coronary artery | UBERON:0001625 | 66.96 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.29 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
184 targeting MEX3B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
Literature-anchored findings (GeneRIF, showing 6)
- 14-3-3 exerts combined effects on hMex-3B and acts as a major regulator of the sorting between distinct classes of RNA granules (PMID:18779327)
- Mex3b role in the Runx3 degradation in gastric cancer. (PMID:29417297)
- MEX3B mediates resistance to cancer immunotherapy by binding to the 3’ UTR of HLA-A to destabilize the HLA-A mRNA and thus downregulate HLA-A expression on the surface of tumor cells. (PMID:29496759)
- he suppressed IL-37 secretion caused by a type 2 milieu can enhance Mex3B-mediated TLR3 activation and subsequent TSLP production in nasal epithelial cells and therefore promotes eosinophilic inflammation in patients with eosinophilic chronic rhinosinusitis with nasal polyps. (PMID:31330219)
- MEX3B inhibits collagen production in eosinophilic nasal polyps by downregulating epithelial cell TGFBR3 mRNA stability. (PMID:36976645)
- Molecular mechanism of specific HLA-A mRNA recognition by the RNA-binding-protein hMEX3B to promote tumor immune escape. (PMID:38326406)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mex3b | ENSDARG00000058369 |
| mus_musculus | Mex3b | ENSMUSG00000057706 |
| rattus_norvegicus | Mex3b | ENSRNOG00000025142 |
Paralogs (3): MEX3C (ENSG00000176624), MEX3D (ENSG00000181588), MEX3A (ENSG00000254726)
Protein
Protein identifiers
RNA-binding protein MEX3B — Q6ZN04 (reviewed: Q6ZN04)
Alternative names: RING finger and KH domain-containing protein 3, RING finger protein 195
All UniProt accessions (1): Q6ZN04
UniProt curated annotations — full annotation on UniProt →
Function. RNA-binding protein. May be involved in post-transcriptional regulatory mechanisms.
Subcellular location. Nucleus. Cytoplasm. P-body. Cytoplasmic granule.
Tissue specificity. Highest levels found in fetal brain and testis. Detected in the adult intestinal epithelium, specifically in goblet cell at protein level.
Post-translational modifications. Phosphorylation at Ser-462 creates a docking site for 14-3-3, which stabilizes the protein and modulates its ability to bind RNA.
Domain organisation. Binds RNA through its KH domains.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZN04-1 | 1 | yes |
| Q6ZN04-3 | 2 |
RefSeq proteins (1): NP_115622* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR004087 | KH_dom | Domain |
| IPR004088 | KH_dom_type_1 | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR036612 | KH_dom_type_1_sf | Homologous_superfamily |
| IPR047226 | KH-I_MEX3_rpt2 | Domain |
| IPR047227 | MEX3 | Family |
| IPR047228 | KH-I_MEX3_rpt1 | Domain |
Pfam: PF00013, PF13920
UniProt features (18 total): region of interest 4, modified residue 3, domain 2, splice variant 2, sequence conflict 2, compositionally biased region 2, chain 1, mutagenesis site 1, zinc finger region 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9JNM | X-RAY DIFFRACTION | 2.2 |
| 9JNL | X-RAY DIFFRACTION | 2.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZN04-F1 | 62.96 | 0.33 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 4, 288, 462
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 177 | prevents rna binding. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 190 (showing top):
AHRARNT_01, TGGTGCT_MIR29A_MIR29B_MIR29C, PAX4_01, TTTGTAG_MIR520D, TATTATA_MIR374, AP2_Q3, GGGTGGRR_PAX4_03, FREAC3_01, TGCTGAY_UNKNOWN, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN, ATTCTTT_MIR186, ACATATC_MIR190, GFI1_01, TGTTTAC_MIR30A5P_MIR30C_MIR30D_MIR30B_MIR30E5P, LEF1_Q6
GO Biological Process (2): protein phosphorylation (GO:0006468), protein autophosphorylation (GO:0046777)
GO Molecular Function (6): RNA binding (GO:0003723), calcium ion binding (GO:0005509), zinc ion binding (GO:0008270), nucleic acid binding (GO:0003676), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (5): P-body (GO:0000932), nucleoplasm (GO:0005654), cytosol (GO:0005829), nucleus (GO:0005634), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 2 |
| phosphorylation | 1 |
| protein modification process | 1 |
| protein phosphorylation | 1 |
| nucleic acid binding | 1 |
| metal ion binding | 1 |
| transition metal ion binding | 1 |
| cation binding | 1 |
| cytoplasmic ribonucleoprotein granule | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1250 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MEX3B | DZIP3 | Q86Y13 | 848 |
| MEX3B | DCP1A | Q9NPI6 | 808 |
| MEX3B | AGO1 | Q9UL18 | 775 |
| MEX3B | SNUPN | O95149 | 774 |
| MEX3B | HNRNPK | P61978 | 714 |
| MEX3B | ATXN1 | P54253 | 694 |
| MEX3B | RUNX3 | Q13761 | 554 |
| MEX3B | AGO2 | Q9UKV8 | 487 |
| MEX3B | MEX3A | A1L020 | 435 |
| MEX3B | SUZ12 | Q15022 | 431 |
| MEX3B | DAZ1 | Q9NQZ3 | 430 |
| MEX3B | PTBP2 | Q9UKA9 | 414 |
| MEX3B | DACT3 | Q96B18 | 410 |
| MEX3B | TTC9B | Q8N6N2 | 404 |
| MEX3B | IRGQ | Q8WZA9 | 400 |
IntAct
23 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ENPP6 | SCAMP1 | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| MEX3B | UBE2D3 | psi-mi:“MI:0915”(physical association) | 0.550 |
| PIP4K2A | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| EPB41L1 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| USP7 | MEX3B | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MEX3B | YWHAE | psi-mi:“MI:0915”(physical association) | 0.400 |
| SFN | MEX3B | psi-mi:“MI:0915”(physical association) | 0.400 |
| ATP13A2 | MEX3B | psi-mi:“MI:0915”(physical association) | 0.370 |
| MEX3B | NUDT3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SNUPN | MEX3B | psi-mi:“MI:0915”(physical association) | 0.370 |
| YWHAH | FOXO6 | psi-mi:“MI:0914”(association) | 0.350 |
| CREB3L2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| PIP4K2A | SAP18 | psi-mi:“MI:0914”(association) | 0.350 |
| RPS11 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| ZNF800 | MED19 | psi-mi:“MI:2364”(proximity) | 0.270 |
| RAP1GAP | MEX3B | psi-mi:“MI:0915”(physical association) | 0.000 |
| UBE2D3 | MEX3B | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (239): MEX3B (Affinity Capture-MS), MEX3B (Affinity Capture-MS), MEX3B (Affinity Capture-MS), SUZ12 (Affinity Capture-Western), HOTAIR (Affinity Capture-RNA), MEX3B (Affinity Capture-Western), MEX3B (Affinity Capture-RNA), MEX3B (Protein-RNA), HLA-A (Affinity Capture-RNA), MEX3B (Two-hybrid), MEX3B (Two-hybrid), AGO1 (Proximity Label-MS), AGO2 (Proximity Label-MS), AGO3 (Proximity Label-MS), AGO4 (Proximity Label-MS)
ESM2 similar proteins: A1L020, A1L3F4, A7X8B3, A7X8B5, A7X8B7, A7X8B9, A7X8C2, A7X8C4, A7X8C7, A7X8C9, A7X8D2, A7X8D4, A7XW25, O97775, O97776, O97952, O97960, P06401, P10275, P84550, P84551, P89463, Q01JD1, Q05A36, Q0VDT2, Q3UE17, Q5PQQ7, Q5U5Q3, Q69Z36, Q6QT55, Q6ZK57, Q6ZN04, Q71FD5, Q7RTV3, Q7TSJ6, Q7XQN1, Q7XT42, Q84SL2, Q86XN8, Q8BQ89
Diamond homologs: A1E2V0, A1L020, A1L3F4, A5D8Q0, A9JTP3, A9ULZ2, D3ZDI6, E3SCZ8, O08863, O10296, O10324, O14064, O15392, O62640, O70201, O88738, P40629, P41435, P41436, P41437, P41454, P47732, P98170, Q05AK5, Q0WPJ7, Q13489, Q13490, Q28ER3, Q28H51, Q50L39, Q557E7, Q5BKL8, Q5R881, Q5RAH9, Q60989, Q62210, Q69Z36, Q6I6F4, Q6J1J1, Q6NTT6
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | MEX3B | ubiquitination |
| MEX3B | “down-regulates quantity by destabilization” | SNUPN | polyubiquitination |
| HOTAIR | “up-regulates activity” | MEX3B | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 23 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SARS-CoV-1-host interactions | 5 | 39.9× | 4e-06 |
| SARS-CoV-1 Infection | 5 | 32.4× | 1e-05 |
| SARS-CoV-2-host interactions | 5 | 27.0× | 2e-05 |
| SARS-CoV-2 Infection | 5 | 18.3× | 9e-05 |
| SARS-CoV Infections | 6 | 15.1× | 3e-05 |
| Viral Infection Pathways | 7 | 9.8× | 7e-05 |
| Membrane Trafficking | 5 | 8.4× | 2e-03 |
| Vesicle-mediated transport | 5 | 7.9× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
96 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 89 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
224 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:82044622:CAGGG:C | acceptor_gain | 0.9900 |
| 15:82044640:G:GC | acceptor_gain | 0.9900 |
| 15:82045445:CCTA:C | donor_loss | 0.9900 |
| 15:82045447:TA:T | donor_loss | 0.9900 |
| 15:82044626:G:C | acceptor_gain | 0.9800 |
| 15:82044626:G:GC | acceptor_gain | 0.9800 |
| 15:82044611:AACC:A | acceptor_loss | 0.9700 |
| 15:82044612:ACCTA:A | acceptor_loss | 0.9700 |
| 15:82044613:CCTA:C | acceptor_loss | 0.9700 |
| 15:82044614:CTA:C | acceptor_loss | 0.9700 |
| 15:82044615:T:G | acceptor_loss | 0.9700 |
| 15:82044630:G:T | acceptor_gain | 0.9700 |
| 15:82045448:A:AC | donor_gain | 0.9700 |
| 15:82045449:C:CC | donor_gain | 0.9700 |
| 15:82044629:C:CT | acceptor_gain | 0.9600 |
| 15:82044610:CAAC:C | acceptor_gain | 0.9500 |
| 15:82044623:A:T | acceptor_gain | 0.9500 |
| 15:82045449:CCTTG:C | donor_gain | 0.9500 |
| 15:82044640:G:C | acceptor_gain | 0.9300 |
| 15:82044622:C:T | acceptor_gain | 0.9100 |
| 15:82044609:ACAAC:A | acceptor_gain | 0.9000 |
| 15:82044610:CAACC:C | acceptor_gain | 0.9000 |
| 15:82044614:C:CC | acceptor_gain | 0.9000 |
| 15:82045448:AC:A | donor_gain | 0.9000 |
| 15:82045449:CC:C | donor_gain | 0.9000 |
| 15:82044612:AC:A | acceptor_gain | 0.8900 |
| 15:82044613:CC:C | acceptor_gain | 0.8900 |
| 15:82044755:C:CA | donor_gain | 0.8900 |
| 15:82044897:T:C | donor_gain | 0.8900 |
| 15:82045501:A:AC | donor_gain | 0.8900 |
AlphaMissense
3678 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:82043170:A:C | I567S | 1.000 |
| 15:82043170:A:G | I567T | 1.000 |
| 15:82043170:A:T | I567N | 1.000 |
| 15:82043176:A:C | I565S | 1.000 |
| 15:82043176:A:G | I565T | 1.000 |
| 15:82043176:A:T | I565N | 1.000 |
| 15:82043179:G:T | A564D | 1.000 |
| 15:82043199:G:C | C557W | 1.000 |
| 15:82043200:C:A | C557F | 1.000 |
| 15:82043200:C:G | C557S | 1.000 |
| 15:82043200:C:T | C557Y | 1.000 |
| 15:82043201:A:G | C557R | 1.000 |
| 15:82043201:A:T | C557S | 1.000 |
| 15:82043208:G:C | C554W | 1.000 |
| 15:82043209:C:A | C554F | 1.000 |
| 15:82043209:C:G | C554S | 1.000 |
| 15:82043209:C:T | C554Y | 1.000 |
| 15:82043210:A:C | C554G | 1.000 |
| 15:82043210:A:G | C554R | 1.000 |
| 15:82043210:A:T | C554S | 1.000 |
| 15:82043242:G:T | A543D | 1.000 |
| 15:82043243:C:G | A543P | 1.000 |
| 15:82043244:G:C | C542W | 1.000 |
| 15:82043245:C:A | C542F | 1.000 |
| 15:82043245:C:G | C542S | 1.000 |
| 15:82043245:C:T | C542Y | 1.000 |
| 15:82043246:A:G | C542R | 1.000 |
| 15:82043246:A:T | C542S | 1.000 |
| 15:82043253:G:C | C539W | 1.000 |
| 15:82043254:C:A | C539F | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000524415 (15:82041723 T>G), RS1000819819 (15:82046297 GGA>G), RS1001077648 (15:82044880 G>A,C), RS1001238891 (15:82045121 C>G,T), RS1002087386 (15:82047021 G>A,T), RS1002148219 (15:82042698 C>G,T), RS1002439659 (15:82046877 C>G), RS1002862019 (15:82045197 G>A), RS1002867013 (15:82045631 T>C), RS1003091185 (15:82042392 A>G), RS1003582278 (15:82046024 G>A,T), RS1003610088 (15:82046203 G>A,C), RS1004439831 (15:82047520 T>C,G), RS1004886824 (15:82041310 T>A), RS1004958830 (15:82041563 G>A)
Disease associations
OMIM: gene MIM:611008 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000298_9 | Body mass index | 7.000000e-06 |
| GCST002401_7 | Post-traumatic stress disorder | 4.000000e-06 |
| GCST005352_3 | Paclitaxel disposition in epithelial ovarian cancer | 6.000000e-06 |
| GCST006291_62 | Spherical equivalent or myopia (age of diagnosis) | 2.000000e-10 |
| GCST006976_60 | Macular thickness | 4.000000e-10 |
| GCST007277_21 | Tourette syndrome | 7.000000e-06 |
| GCST008839_116 | Height | 2.000000e-13 |
| GCST010002_102 | Refractive error | 3.000000e-27 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0004847 | age at onset |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
54 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, affects expression, affects cotreatment | 6 |
| trichostatin A | decreases expression, affects cotreatment | 3 |
| sodium arsenite | decreases expression, increases expression | 3 |
| Estradiol | affects expression, affects cotreatment, increases expression, decreases expression | 3 |
| methylmercuric chloride | increases expression, affects cotreatment | 2 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Formaldehyde | increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tretinoin | increases expression | 2 |
| bisphenol A | decreases methylation | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| titanium dioxide | decreases expression | 1 |
| kojic acid | increases expression | 1 |
| dimethylselenide | decreases expression, increases expression, increases oxidation | 1 |
| tobacco tar | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| homosalate | affects cotreatment, decreases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| ICG 001 | affects expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| licochalcone B | increases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3AZ | Abcam HEK293T MEX3B KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): post-traumatic stress disorder