MIDN
gene geneOn this page
Also known as Stx
Summary
MIDN (midnolin, HGNC:16298) is a protein-coding gene on chromosome 19p13.3, encoding Midnolin (Q504T8). Facilitates the ubiquitin-independent proteasomal degradation of stimulus-induced transcription factors such as FOSB, EGR1, NR4A1, and IRF4 to the proteasome for degradation.
Enables molecular adaptor activity. Involved in proteasomal ubiquitin-independent protein catabolic process. Located in cytoplasm and nucleus.
Source: NCBI Gene 90007 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 133 total
- MANE Select transcript:
NM_001388306
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16298 |
| Approved symbol | MIDN |
| Name | midnolin |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Stx |
| Ensembl gene | ENSG00000167470 |
| Ensembl biotype | protein_coding |
| OMIM | 606700 |
| Entrez | 90007 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 9 protein_coding, 2 retained_intron
ENST00000300952, ENST00000590136, ENST00000591302, ENST00000591446, ENST00000682408, ENST00000872580, ENST00000937330, ENST00000937331, ENST00000937332, ENST00000937333, ENST00000937334
RefSeq mRNA: 4 — MANE Select: NM_001388306
NM_001388306, NM_001388307, NM_001388474, NM_177401
CCDS: CCDS32864, CCDS92478
Canonical transcript exons
ENST00000682408 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001153018 | 1255422 | 1255694 |
| ENSE00001371352 | 1254167 | 1254478 |
| ENSE00001377762 | 1251562 | 1251649 |
| ENSE00001378771 | 1254902 | 1255061 |
| ENSE00001388090 | 1249890 | 1250529 |
| ENSE00002836573 | 1253954 | 1254082 |
| ENSE00003745794 | 1251839 | 1251901 |
| ENSE00003920019 | 1256995 | 1259143 |
| ENSE00003920233 | 1248583 | 1248660 |
Expression profiles
Bgee: expression breadth ubiquitous, 254 present calls, max score 98.32.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 88.2926 / max 2395.7242, expressed in 1824 samples.
FANTOM5 promoters (18 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 172911 | 47.6150 | 1811 |
| 172907 | 22.7180 | 1792 |
| 172923 | 5.9376 | 1548 |
| 172924 | 5.5490 | 1556 |
| 172925 | 1.5456 | 718 |
| 172906 | 0.9649 | 514 |
| 172920 | 0.9341 | 478 |
| 172910 | 0.7956 | 532 |
| 172905 | 0.7433 | 164 |
| 172922 | 0.2783 | 98 |
Top tissues by expression
257 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oviduct epithelium | UBERON:0004804 | 98.32 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.27 | gold quality |
| left uterine tube | UBERON:0001303 | 97.85 | gold quality |
| kidney epithelium | UBERON:0004819 | 97.38 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 96.87 | gold quality |
| adenohypophysis | UBERON:0002196 | 96.67 | gold quality |
| upper arm skin | UBERON:0004263 | 96.63 | gold quality |
| ganglionic eminence | UBERON:0004023 | 96.09 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.09 | gold quality |
| embryo | UBERON:0000922 | 96.08 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 96.01 | gold quality |
| skin of abdomen | UBERON:0001416 | 95.98 | gold quality |
| pituitary gland | UBERON:0000007 | 95.91 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.88 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.85 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 95.55 | gold quality |
| buccal mucosa cell | CL:0002336 | 95.50 | gold quality |
| monocyte | CL:0000576 | 95.45 | gold quality |
| esophagus mucosa | UBERON:0002469 | 95.42 | gold quality |
| leukocyte | CL:0000738 | 95.33 | gold quality |
| superior surface of tongue | UBERON:0007371 | 95.29 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 95.09 | gold quality |
| transverse colon | UBERON:0001157 | 95.07 | gold quality |
| cortical plate | UBERON:0005343 | 95.07 | gold quality |
| granulocyte | CL:0000094 | 94.94 | gold quality |
| cardiac atrium | UBERON:0002081 | 94.91 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 94.90 | gold quality |
| right atrium auricular region | UBERON:0006631 | 94.90 | gold quality |
| saphenous vein | UBERON:0007318 | 94.88 | gold quality |
| vagina | UBERON:0000996 | 94.85 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9841 | yes | 2230.20 |
| E-ANND-3 | yes | 22.38 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 5)
- midnolin plays a role in cellular signaling of adult tissues and regulates glucokinase enzyme activity in pancreatic beta cells (PMID:24187134)
- MIDN promotes the expression of parkin E3 ubiquitin ligase, and that MIDN loss can trigger Parkinson’s disease-related pathogenic mechanisms. (PMID:28724963)
- Midnolin is a confirmed genetic risk factor for Parkinson’s disease. (PMID:31588691)
- Structural Variants of Midnolin, a Genetic Risk Factor for Parkinson’s Disease, in a Yamagata Cohort. (PMID:36858566)
- The midnolin-proteasome pathway catches proteins for ubiquitination-independent degradation. (PMID:37616343)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | midn | ENSDARG00000018524 |
| mus_musculus | Midn | ENSMUSG00000035621 |
| rattus_norvegicus | Midn | ENSRNOG00000015434 |
| drosophila_melanogaster | stx | FBGN0052676 |
Protein
Protein identifiers
Midnolin — Q504T8 (reviewed: Q504T8)
Alternative names: Midbrain nucleolar protein
All UniProt accessions (2): A0A804HKJ8, Q504T8
UniProt curated annotations — full annotation on UniProt →
Function. Facilitates the ubiquitin-independent proteasomal degradation of stimulus-induced transcription factors such as FOSB, EGR1, NR4A1, and IRF4 to the proteasome for degradation. Promotes also the degradation of other substrates such as CBX4. Plays a role in inhibiting the activity of glucokinase GCK and both glucose-induced and basal insulin secretion.
Subunit / interactions. Interacts with GCK; the interaction occurs preferentially at low glucose levels. Interacts with the proteasome.
Subcellular location. Nucleus. Nucleolus. Cytoplasm. Cytosol.
Domain organisation. Contains three domains that function in concert to promote proteasomal degradation of bound substrates. Contains a ubiquitin-like domain (Ubl) toward its N-terminus that is necessary to promote substrate degradation. In the middle, two domains termed Catch1 and Catch2 are necessary and sufficient to interact with unstructured regions within substrates. The long C-terminal region associates with the proteasome.
RefSeq proteins (4): NP_001375235, NP_001375236, NP_001375403, NP_796375 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000626 | Ubiquitin-like_dom | Domain |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR039336 | Midnolin | Family |
Pfam: PF00240
UniProt features (9 total): compositionally biased region 4, region of interest 2, chain 1, domain 1, sequence conflict 1
Structure
Experimental structures (PDB)
27 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9VEH | X-RAY DIFFRACTION | 2 |
| 9VE3 | X-RAY DIFFRACTION | 2.1 |
| 9VE7 | X-RAY DIFFRACTION | 2.15 |
| 8VQP | X-RAY DIFFRACTION | 2.52 |
| 9VE4 | X-RAY DIFFRACTION | 2.55 |
| 9MBP | ELECTRON MICROSCOPY | 2.75 |
| 9NKG | ELECTRON MICROSCOPY | 2.8 |
| 9VE6 | X-RAY DIFFRACTION | 2.8 |
| 9MBO | ELECTRON MICROSCOPY | 2.83 |
| 9VE8 | X-RAY DIFFRACTION | 2.85 |
| 9BV3 | ELECTRON MICROSCOPY | 2.9 |
| 9NKI | ELECTRON MICROSCOPY | 2.94 |
| 21IK | X-RAY DIFFRACTION | 2.99 |
| 9MBQ | ELECTRON MICROSCOPY | 3.08 |
| 9BV1 | ELECTRON MICROSCOPY | 3.1 |
| 9VE5 | X-RAY DIFFRACTION | 3.2 |
| 21IE | X-RAY DIFFRACTION | 3.24 |
| 21IP | X-RAY DIFFRACTION | 3.3 |
| 9M2W | ELECTRON MICROSCOPY | 3.31 |
| 9BV2 | ELECTRON MICROSCOPY | 3.4 |
| 22MM | ELECTRON MICROSCOPY | 3.42 |
| 9UG9 | ELECTRON MICROSCOPY | 3.5 |
| 9VEA | X-RAY DIFFRACTION | 3.6 |
| 9W39 | ELECTRON MICROSCOPY | 3.65 |
| 9BUI | ELECTRON MICROSCOPY | 3.9 |
| 9WBG | ELECTRON MICROSCOPY | 4.23 |
| 9UF8 | ELECTRON MICROSCOPY | 4.32 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q504T8-F1 | 66.29 | 0.30 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 0 (showing top):
GO Biological Process (3): proteasomal ubiquitin-independent protein catabolic process (GO:0010499), negative regulation of glucokinase activity (GO:0033132), negative regulation of insulin secretion (GO:0046676)
GO Molecular Function (3): kinase binding (GO:0019900), molecular adaptor activity (GO:0060090), protein binding (GO:0005515)
GO Cellular Component (4): nucleus (GO:0005634), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| cellular anatomical structure | 2 |
| proteasomal protein catabolic process | 1 |
| glucokinase activity | 1 |
| negative regulation of kinase activity | 1 |
| insulin secretion | 1 |
| negative regulation of protein secretion | 1 |
| regulation of insulin secretion | 1 |
| negative regulation of peptide hormone secretion | 1 |
| enzyme binding | 1 |
| molecular_function | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
368 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MIDN | UBL7 | Q96S82 | 435 |
| MIDN | SBNO2 | Q9Y2G9 | 396 |
| MIDN | LIMD2 | Q9BT23 | 368 |
| MIDN | DCDC2C | A8MYV0 | 359 |
| MIDN | DBX2 | Q6ZNG2 | 349 |
| MIDN | SLC4A8 | Q2Y0W8 | 324 |
| MIDN | USP54 | Q70EL1 | 320 |
| MIDN | UBL4A | P11441 | 319 |
| MIDN | COPB2 | P35606 | 304 |
| MIDN | PRKN | O60260 | 297 |
| MIDN | UTP11 | Q9Y3A2 | 285 |
| MIDN | USP48 | Q86UV5 | 283 |
| MIDN | DLG5 | Q8TDM6 | 272 |
| MIDN | SLC6A20 | Q9NP91 | 267 |
| MIDN | TMCC1 | O94876 | 262 |
IntAct
46 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PSMD2 | PSMD11 | psi-mi:“MI:0914”(association) | 0.730 |
| FOSB | JUN | psi-mi:“MI:0914”(association) | 0.690 |
| PSMC4 | PSMD11 | psi-mi:“MI:0914”(association) | 0.670 |
| KRT34 | MIDN | psi-mi:“MI:0915”(physical association) | 0.560 |
| MIDN | CMTM4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MIDN | PLEKHF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SYNGR3 | MIDN | psi-mi:“MI:0915”(physical association) | 0.560 |
| GADD45G | MIDN | psi-mi:“MI:0914”(association) | 0.550 |
| GADD45G | MIDN | psi-mi:“MI:0915”(physical association) | 0.550 |
| ERCC6L | CHEK1 | psi-mi:“MI:0914”(association) | 0.530 |
| EMILIN1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | MYO9A | psi-mi:“MI:0914”(association) | 0.530 |
| PTGES3 | AIP | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | CCDC85C | psi-mi:“MI:0914”(association) | 0.530 |
| FCN1 | MIDN | psi-mi:“MI:0915”(physical association) | 0.370 |
| GADD45A | MIDN | psi-mi:“MI:0915”(physical association) | 0.370 |
| MAP3K20 | MIDN | psi-mi:“MI:0915”(physical association) | 0.370 |
| PSMC1 | ZNF561 | psi-mi:“MI:0914”(association) | 0.350 |
| NR4A1 | GRK6 | psi-mi:“MI:0914”(association) | 0.350 |
| EGR1 | NES | psi-mi:“MI:0914”(association) | 0.350 |
| GLI2 | SPOP | psi-mi:“MI:0914”(association) | 0.350 |
| PTGES3 | SBNO1 | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF418 | ZNF195 | psi-mi:“MI:0914”(association) | 0.350 |
| TNNC1 | MYO1B | psi-mi:“MI:0914”(association) | 0.350 |
| EGR1 | NAB1 | psi-mi:“MI:0914”(association) | 0.350 |
| KCTD17 | PXDNL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (643): MIDN (Affinity Capture-MS), MIDN (Affinity Capture-MS), MIDN (Affinity Capture-MS), MIDN (Affinity Capture-MS), MIDN (Two-hybrid), MIDN (Two-hybrid), PLEKHF2 (Two-hybrid), CMTM4 (Two-hybrid), MIDN (Two-hybrid), MIDN (Two-hybrid), MIDN (Affinity Capture-RNA), MIDN (Affinity Capture-MS), MIDN (Affinity Capture-MS), MIDN (Affinity Capture-MS), MIDN (Affinity Capture-MS)
ESM2 similar proteins: A0FI79, A1A4I4, A1A5B6, A4D2P6, A6H7I8, F1LXF1, O60346, P11274, P53349, P59672, P70268, Q0QWG9, Q13905, Q3MII6, Q3U0J8, Q504T8, Q50H33, Q5EBH1, Q62865, Q63433, Q69ZT9, Q6NS60, Q6PAJ1, Q6WVG3, Q6ZWB6, Q7Z5H3, Q8BL80, Q8BUP8, Q8BYH7, Q8C190, Q8CGA2, Q8CHE4, Q8N2R8, Q8R554, Q8TE49, Q8TF61, Q8WUA7, Q92625, Q95KI1, Q96CX2
Diamond homologs: B0KWT6, B1MTV8, B7NZQ9, D4AE48, P11441, Q3TPJ7, Q504T8, Q5EB28, Q5R4T1, Q6NYU6, Q7ZWN4, Q7ZWX9, Q8SXD4
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 46 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of activated PAK-2p34 by proteasome mediated degradation | 5 | 46.4× | 1e-06 |
| SPOP-mediated proteasomal degradation of PD-L1(CD274) | 6 | 45.7× | 2e-07 |
| Regulation of ornithine decarboxylase (ODC) | 5 | 45.3× | 1e-06 |
| Degradation of GLI2 by the proteasome | 6 | 44.8× | 2e-07 |
| Vpu mediated degradation of CD4 | 5 | 44.3× | 1e-06 |
| Autodegradation of the E3 ubiquitin ligase COP1 | 5 | 44.3× | 1e-06 |
| Ubiquitin-dependent degradation of Cyclin D | 5 | 44.3× | 1e-06 |
| Cross-presentation of soluble exogenous antigens (endosomes) | 5 | 42.3× | 1e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| proteasome-mediated ubiquitin-dependent protein catabolic process | 8 | 9.7× | 5e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
133 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 112 |
| Likely benign | 6 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1266 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:1248656:GCCCG:G | donor_gain | 1.0000 |
| 19:1248659:CGG:C | donor_loss | 1.0000 |
| 19:1248660:GGTG:G | donor_loss | 1.0000 |
| 19:1248662:T:G | donor_loss | 1.0000 |
| 19:1249882:A:AG | acceptor_gain | 1.0000 |
| 19:1249883:C:G | acceptor_gain | 1.0000 |
| 19:1250525:GACAC:G | donor_gain | 1.0000 |
| 19:1250528:AC:A | donor_gain | 1.0000 |
| 19:1250530:G:GG | donor_gain | 1.0000 |
| 19:1251560:A:AG | acceptor_gain | 1.0000 |
| 19:1251560:AGCC:A | acceptor_gain | 1.0000 |
| 19:1251560:AGCCG:A | acceptor_gain | 1.0000 |
| 19:1251561:G:GA | acceptor_gain | 1.0000 |
| 19:1251561:GCC:G | acceptor_gain | 1.0000 |
| 19:1251561:GCCG:G | acceptor_gain | 1.0000 |
| 19:1251561:GCCGG:G | acceptor_gain | 1.0000 |
| 19:1251834:T:TA | acceptor_gain | 1.0000 |
| 19:1251834:TGTA:T | acceptor_loss | 1.0000 |
| 19:1251837:A:AG | acceptor_gain | 1.0000 |
| 19:1251838:G:GT | acceptor_gain | 1.0000 |
| 19:1251838:GT:G | acceptor_gain | 1.0000 |
| 19:1251838:GTCT:G | acceptor_gain | 1.0000 |
| 19:1251838:GTCTC:G | acceptor_gain | 1.0000 |
| 19:1251898:GCAG:G | donor_gain | 1.0000 |
| 19:1251899:CAGG:C | donor_loss | 1.0000 |
| 19:1251900:AGGTA:A | donor_loss | 1.0000 |
| 19:1251902:G:GG | donor_gain | 1.0000 |
| 19:1251902:GTA:G | donor_loss | 1.0000 |
| 19:1251903:T:A | donor_loss | 1.0000 |
| 19:1254162:TGCA:T | acceptor_loss | 1.0000 |
AlphaMissense
3263 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:1250400:T:A | I35N | 1.000 |
| 19:1250463:T:C | L56P | 1.000 |
| 19:1250514:T:A | L73H | 1.000 |
| 19:1250517:T:C | L74P | 1.000 |
| 19:1251567:T:A | L80H | 1.000 |
| 19:1251615:T:C | L96P | 1.000 |
| 19:1251621:T:C | L98S | 1.000 |
| 19:1251627:C:A | P100H | 1.000 |
| 19:1251875:G:C | A120P | 1.000 |
| 19:1251879:T:A | L121H | 1.000 |
| 19:1251879:T:C | L121P | 1.000 |
| 19:1251879:T:G | L121R | 1.000 |
| 19:1251888:T:A | L124H | 1.000 |
| 19:1251888:T:C | L124P | 1.000 |
| 19:1254174:A:T | D131V | 1.000 |
| 19:1254176:T:A | F132I | 1.000 |
| 19:1254176:T:C | F132L | 1.000 |
| 19:1254176:T:G | F132V | 1.000 |
| 19:1254177:T:C | F132S | 1.000 |
| 19:1254177:T:G | F132C | 1.000 |
| 19:1254178:C:A | F132L | 1.000 |
| 19:1254178:C:G | F132L | 1.000 |
| 19:1254180:T:A | L133Q | 1.000 |
| 19:1254180:T:C | L133P | 1.000 |
| 19:1254185:G:C | G135R | 1.000 |
| 19:1254186:G:A | G135D | 1.000 |
| 19:1254186:G:T | G135V | 1.000 |
| 19:1254198:T:A | L139Q | 1.000 |
| 19:1254198:T:C | L139P | 1.000 |
| 19:1254198:T:G | L139R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000001508 (19:1248017 C>A,T), RS1000010342 (19:1249524 C>A), RS1000071729 (19:1253129 C>A,T), RS1000249863 (19:1257330 C>T), RS1000349535 (19:1258196 G>A), RS1000376514 (19:1254027 G>A), RS1000392030 (19:1251113 G>T), RS1000518474 (19:1252419 G>A), RS1000700094 (19:1251201 C>T), RS1000782970 (19:1249768 G>A), RS1000803021 (19:1257704 C>A,G,T), RS1000853879 (19:1256554 C>T), RS1000899036 (19:1249599 G>T), RS1001151730 (19:1257803 C>T), RS1001278298 (19:1249048 C>G)
Disease associations
OMIM: gene MIM:606700 | disease phenotypes: MIM:192500
GenCC curated gene-disease
Mondo (1): familial long QT syndrome (MONDO:0019171)
Orphanet (2): Romano-Ward syndrome (Orphanet:101016), Congenital long QT syndrome (Orphanet:768)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002383_93 | Hematocrit | 3.000000e-10 |
| GCST90002384_441 | Hemoglobin | 3.000000e-10 |
| GCST90002390_509 | Mean corpuscular hemoglobin | 2.000000e-12 |
| GCST90002392_48 | Mean corpuscular volume | 2.000000e-09 |
| GCST90002397_395 | Mean spheric corpuscular volume | 5.000000e-14 |
| GCST90002403_342 | Red blood cell count | 1.000000e-15 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004348 | hematocrit |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0004305 | erythrocyte count |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases methylation | 5 |
| (+)-JQ1 compound | increases expression, decreases expression | 3 |
| bisphenol A | increases expression | 2 |
| trichostatin A | affects cotreatment, decreases expression | 2 |
| sodium arsenite | increases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Air Pollutants | affects expression, increases abundance, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| dicrotophos | increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| testosterone undecanoate | affects cotreatment, decreases expression | 1 |
| kojic acid | decreases expression | 1 |
| methylparaben | increases expression | 1 |
| cupric chloride | increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) | increases expression | 1 |
| MT19c compound | decreases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Arbutin | decreases expression | 1 |
| Arsenic | decreases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D7V2 | Ubigene A-549 MIDN KO | Cancer cell line | Male |
Clinical trials (associated diseases)
66 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
| NCT01849003 | PHASE1 | COMPLETED | Study of the Effect of GS-6615 in Subjects With LQT-3 |
| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
| NCT00399412 | Not specified | COMPLETED | ECG Signal Collection From Long QT Syndrome, Wide QRS Complexes, Heart Failure, and Cardiac Resynchronization Patients |
| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
| NCT00588965 | Not specified | COMPLETED | Effect of Beta-blocker Therapy on QTc Response in Exercise and Recovery in Normal Subjects |
| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
| NCT01903564 | Not specified | COMPLETED | Fetal and Neonatal Magnetophysiology |
| NCT02082431 | Not specified | COMPLETED | Determine the Incidence of Long QT Amongst a Large Cohort of Subjects Diagnosed With Unilateral or Bilateral Sensorineural Hearing Loss. |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02425189 | Not specified | COMPLETED | The Canadian National Long QT Syndrome Registry |
| NCT02439645 | Not specified | TERMINATED | A Registry to Determine the Clinical and Genetic Risk Factors for Torsade De Pointes |
| NCT02439658 | Not specified | UNKNOWN | Genetics of QT Prolongation With Antiarrhythmics |
| NCT02549664 | Not specified | COMPLETED | Exercise in Genetic Cardiovascular Conditions |
| NCT02581241 | Not specified | COMPLETED | Abnormal QT-Response to the Sudden Tachycardia Provoked by Standing in Individuals With Drug-induced Long QT Syndrome |
| NCT02680080 | Not specified | COMPLETED | Effect of Grapefruit on QT Interval in Healthy Volunteers and Patients With Congenital Long QT Syndrome |
| NCT02775513 | Not specified | UNKNOWN | Metabolism of Patients With Genetically Caused Cardiac Arrhythmia |
| NCT02814981 | Not specified | UNKNOWN | Hydroxyzine and Risk of Prolongation of QT Interval |
| NCT02876380 | Not specified | COMPLETED | Prospective Identification of Long QT Syndrome in Fetal Life |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03544918 | Not specified | COMPLETED | Prevalence of Congenital Long QT Syndrome and Acquired QT Prolongation in a Hospital Cohort |
| NCT03642405 | Not specified | UNKNOWN | Drug-induced Repolarization ECG Changes |
| NCT03678311 | Not specified | COMPLETED | Long QT Syndrome and Sleep Apnea |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial long QT syndrome