MIR3936HG

Summary

MIR3936HG (MIR3936 host gene, HGNC:40538) is a long non-coding RNA gene on chromosome 5q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40538
Approved symbol	MIR3936HG
Name	MIR3936 host gene
Location	5q31.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC553103, SLC22A5-AS1
Ensembl gene	ENSG00000233006
Ensembl biotype	lncRNA
Entrez	553103
RNAcentral	URS000075A913 — lncRNA, 1802 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 8 lncRNA, 1 retained_intron

ENST00000453876, ENST00000457998, ENST00000616965, ENST00000621103, ENST00000649993, ENST00000666504, ENST00000668364, ENST00000669845, ENST00000742927

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000453876 — 2 exons

Exon	Start	End
ENSE00001644370	132352489	132352550
ENSE00001654314	132349433	132349957

Expression profiles

Bgee: expression breadth ubiquitous, 169 present calls, max score 89.02.

FANTOM5 (CAGE): breadth broad, TPM avg 2.5874 / max 89.1217, expressed in 837 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
63309	1.3931	587
63310	1.1943	443

Top tissues by expression

252 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
metanephros cortex	UBERON:0010533	89.02	gold quality
adenohypophysis	UBERON:0002196	88.88	gold quality
right uterine tube	UBERON:0001302	88.86	gold quality
gastrocnemius	UBERON:0001388	87.48	gold quality
right hemisphere of cerebellum	UBERON:0014890	87.44	gold quality
pituitary gland	UBERON:0000007	87.10	gold quality
cerebellar hemisphere	UBERON:0002245	86.21	gold quality
muscle of leg	UBERON:0001383	86.04	gold quality
cerebellar cortex	UBERON:0002129	85.95	gold quality
body of pancreas	UBERON:0001150	83.82	gold quality
apex of heart	UBERON:0002098	83.76	gold quality
mucosa of transverse colon	UBERON:0004991	83.71	gold quality
right lobe of thyroid gland	UBERON:0001119	83.62	gold quality
left ovary	UBERON:0002119	83.36	gold quality
left lobe of thyroid gland	UBERON:0001120	83.33	gold quality
right atrium auricular region	UBERON:0006631	82.95	gold quality
cerebellum	UBERON:0002037	82.94	gold quality
heart left ventricle	UBERON:0002084	82.47	gold quality
tibialis anterior	UBERON:0001385	82.46	silver quality
right lobe of liver	UBERON:0001114	82.33	gold quality
transverse colon	UBERON:0001157	81.93	gold quality
right frontal lobe	UBERON:0002810	81.83	gold quality
thyroid gland	UBERON:0002046	81.78	gold quality
right ovary	UBERON:0002118	81.56	gold quality
adult mammalian kidney	UBERON:0000082	81.41	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.18	gold quality
cardiac ventricle	UBERON:0002082	81.07	gold quality
cardiac atrium	UBERON:0002081	80.66	gold quality
hindlimb stylopod muscle	UBERON:0004252	80.54	gold quality
anterior cingulate cortex	UBERON:0009835	80.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.23

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Epstein-Barr virus (EBV)-miR-BART6-3p, a microRNA encoded by oncogenic EBV, inhibited EBV-associated cancer cell migration and invasion by targeting and downregulating a novel long non-coding RNA LOC553103. (PMID:27584792)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.