MIR3976HG

Summary

MIR3976HG (MIR3976 host gene, HGNC:51104) is a long non-coding RNA gene on chromosome 18p11.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51104
Approved symbol	MIR3976HG
Name	MIR3976 host gene
Location	18p11.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	LINC01469
Ensembl gene	ENSG00000261738
Ensembl biotype	lncRNA
Entrez	645355
RNAcentral	URS00001FE470 — lncRNA, 1690 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 66 — 66 lncRNA

ENST00000562452, ENST00000566533, ENST00000580378, ENST00000652835, ENST00000653157, ENST00000653194, ENST00000653236, ENST00000653609, ENST00000654302, ENST00000654509, ENST00000654796, ENST00000654839, ENST00000654963, ENST00000655587, ENST00000655616, ENST00000656406, ENST00000656844, ENST00000658289, ENST00000658316, ENST00000659973, ENST00000661027, ENST00000661123, ENST00000662782, ENST00000664262, ENST00000665407, ENST00000665768, ENST00000666521, ENST00000666692, ENST00000667098, ENST00000667177, ENST00000668422, ENST00000668423, ENST00000668692, ENST00000668925, ENST00000670176, ENST00000670689, ENST00000671001, ENST00000686027, ENST00000686054, ENST00000686698, ENST00000689606, ENST00000763398, ENST00000763399, ENST00000763400, ENST00000763401, ENST00000763402, ENST00000763403, ENST00000763404, ENST00000763405, ENST00000763406, ENST00000763407, ENST00000763408, ENST00000763409, ENST00000763410, ENST00000763411, ENST00000763412, ENST00000763413, ENST00000763414, ENST00000763415, ENST00000763416, ENST00000763417, ENST00000763418, ENST00000763419, ENST00000763420, ENST00000763421, ENST00000763422

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562452 — 4 exons

Exon	Start	End
ENSE00002577857	5748819	5748964
ENSE00002587963	5793587	5793742
ENSE00002588809	5762298	5762473
ENSE00002727384	5876253	5876328

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 79.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0798 / max 41.9509, expressed in 18 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
169250	0.0409	15
169252	0.0284	3
169251	0.0104	3

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.57	gold quality
left testis	UBERON:0004533	77.86	gold quality
right testis	UBERON:0004534	76.73	gold quality
sperm	CL:0000019	76.14	silver quality
testis	UBERON:0000473	74.99	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.67	gold quality
Brodmann (1909) area 9	UBERON:0013540	74.56	gold quality
right frontal lobe	UBERON:0002810	73.29	gold quality
prefrontal cortex	UBERON:0000451	69.45	gold quality
sural nerve	UBERON:0015488	69.45	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	68.99	gold quality
frontal cortex	UBERON:0001870	65.92	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.89	gold quality
neocortex	UBERON:0001950	64.48	gold quality
cerebellar hemisphere	UBERON:0002245	61.73	gold quality
cerebral cortex	UBERON:0000956	61.33	gold quality
anterior cingulate cortex	UBERON:0009835	61.06	gold quality
ventricular zone	UBERON:0003053	60.26	gold quality
primary visual cortex	UBERON:0002436	58.85	gold quality
endothelial cell	CL:0000115	58.33	gold quality
ganglionic eminence	UBERON:0004023	57.71	silver quality
tibial nerve	UBERON:0001323	57.48	gold quality
forebrain	UBERON:0001890	56.59	gold quality
brain	UBERON:0000955	55.49	gold quality
monocyte	CL:0000576	54.84	gold quality
occipital lobe	UBERON:0002021	54.08	gold quality
buccal mucosa cell	CL:0002336	53.91	gold quality
islet of Langerhans	UBERON:0000006	50.45	gold quality
anatomical system	UBERON:0000467	49.91	gold quality
material anatomical entity	UBERON:0000465	49.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.