MIR548A1HG

Summary

MIR548A1HG (MIR548A1 host gene, HGNC:53539) is a long non-coding RNA gene on chromosome 6p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53539
Approved symbol	MIR548A1HG
Name	MIR548A1 host gene
Location	6p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000283408
Ensembl biotype	lncRNA
Entrez	105374956
RNAcentral	URS00008B7EA7 — lncRNA, 1746 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000636739, ENST00000637804, ENST00000662927, ENST00000835487, ENST00000835488, ENST00000835489, ENST00000835490

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000636739 — 5 exons

Exon	Start	End
ENSE00003793176	18528103	18528256
ENSE00003794551	18526055	18526130
ENSE00003797332	18535848	18536053
ENSE00003798241	18522739	18522835
ENSE00003800177	18536172	18536196

Expression profiles

Bgee: expression breadth broad, 76 present calls, max score 84.82.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0104 / max 10.8260, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
66221	0.0104	3

Top tissues by expression

76 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.82	gold quality
gall bladder	UBERON:0002110	66.00	gold quality
endometrium	UBERON:0001295	62.53	gold quality
skeletal muscle tissue	UBERON:0001134	61.46	gold quality
blood	UBERON:0000178	57.61	gold quality
anterior cingulate cortex	UBERON:0009835	56.34	gold quality
testis	UBERON:0000473	54.56	gold quality
left testis	UBERON:0004533	53.98	gold quality
monocyte	CL:0000576	53.03	gold quality
right testis	UBERON:0004534	52.34	gold quality
prefrontal cortex	UBERON:0000451	51.33	gold quality
urinary bladder	UBERON:0001255	50.78	gold quality
lymph node	UBERON:0000029	49.95	gold quality
right lobe of thyroid gland	UBERON:0001119	49.95	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.97	gold quality
multicellular organism	UBERON:0000468	48.85	gold quality
thyroid gland	UBERON:0002046	48.83	gold quality
descending thoracic aorta	UBERON:0002345	48.76	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	48.63	gold quality
left lobe of thyroid gland	UBERON:0001120	48.61	gold quality
muscle of leg	UBERON:0001383	47.84	gold quality
islet of Langerhans	UBERON:0000006	47.50	gold quality
myometrium	UBERON:0001296	47.44	gold quality
gastrocnemius	UBERON:0001388	46.88	gold quality
small intestine Peyer’s patch	UBERON:0003454	46.62	gold quality
right lobe of liver	UBERON:0001114	46.26	silver quality
subcutaneous adipose tissue	UBERON:0002190	45.81	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.61	silver quality
adipose tissue	UBERON:0001013	45.59	gold quality
left ovary	UBERON:0002119	45.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.