MKNK2

gene
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Also known as MNK2

Summary

MKNK2 (MAPK interacting serine/threonine kinase 2, HGNC:7111) is a protein-coding gene on chromosome 19p13.3, encoding MAP kinase-interacting serine/threonine-protein kinase 2 (Q9HBH9). Serine/threonine-protein kinase that phosphorylates SFPQ/PSF, HNRNPA1 and EIF4E.

This gene encodes a member of the calcium/calmodulin-dependent protein kinases (CAMK) Ser/Thr protein kinase family, which belongs to the protein kinase superfamily. This protein contains conserved DLG (asp-leu-gly) and ENIL (glu-asn-ile-leu) motifs, and an N-terminal polybasic region which binds importin A and the translation factor scaffold protein eukaryotic initiation factor 4G (eIF4G). This protein is one of the downstream kinases activated by mitogen-activated protein (MAP) kinases. It phosphorylates the eukaryotic initiation factor 4E (eIF4E), thus playing important roles in the initiation of mRNA translation, oncogenic transformation and malignant cell proliferation. In addition to eIF4E, this protein also interacts with von Hippel-Lindau tumor suppressor (VHL), ring-box 1 (Rbx1) and Cullin2 (Cul2), which are all components of the CBC(VHL) ubiquitin ligase E3 complex. Multiple alternatively spliced transcript variants have been found, but the full-length nature and biological activity of only two variants are determined. These two variants encode distinct isoforms which differ in activity and regulation, and in subcellular localization.

Source: NCBI Gene 2872 — RefSeq curated summary.

At a glance

  • GWAS associations: 1
  • Clinical variants (ClinVar): 102 total
  • Druggable target: yes — 41 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_199054

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:7111
Approved symbolMKNK2
NameMAPK interacting serine/threonine kinase 2
Location19p13.3
Locus typegene with protein product
StatusApproved
AliasesMNK2
Ensembl geneENSG00000099875
Ensembl biotypeprotein_coding
OMIM605069
Entrez2872

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 9 protein_coding, 3 retained_intron, 2 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined

ENST00000250896, ENST00000309340, ENST00000585667, ENST00000586620, ENST00000586828, ENST00000587416, ENST00000588014, ENST00000589441, ENST00000589509, ENST00000589534, ENST00000591142, ENST00000591588, ENST00000907124, ENST00000907125, ENST00000907126, ENST00000918502

RefSeq mRNA: 2 — MANE Select: NM_199054 NM_017572, NM_199054

CCDS: CCDS12079, CCDS12080

Canonical transcript exons

ENST00000250896 — 14 exons

ExonStartEnd
ENSE0000137657720510962051244
ENSE0000149157920508012050947
ENSE0000275481120374712039856
ENSE0000351998520427662042870
ENSE0000353085820435032043582
ENSE0000353523920463672046468
ENSE0000355104820431242043197
ENSE0000357787820418402042034
ENSE0000359552620401342040177
ENSE0000360917120410402041204
ENSE0000361024420466042046691
ENSE0000361524820426072042662
ENSE0000362299920461862046283
ENSE0000365919120424272042522

Expression profiles

Bgee: expression breadth ubiquitous, 296 present calls, max score 99.69.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 128.9913 / max 5190.5421, expressed in 1828 samples.

FANTOM5 promoters (14 alternative TSS)

Promoter IDTPM avgSamples expressed
178116122.72461826
1781041.6474831
1781051.1447479
1781140.5923272
1781100.5297278
1781110.4668203
1781120.4215204
1781060.3536145
1781070.3285151
1781010.2827112

Top tissues by expression

296 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
superior surface of tongueUBERON:000737199.69gold quality
parotid glandUBERON:000183199.68gold quality
body of tongueUBERON:001187699.68gold quality
tongueUBERON:000172399.65gold quality
pharyngeal mucosaUBERON:000035599.62gold quality
amniotic fluidUBERON:000017399.61gold quality
buccal mucosa cellCL:000233699.56gold quality
gastrocnemiusUBERON:000138899.56gold quality
esophagus squamous epitheliumUBERON:000692099.48gold quality
cervix squamous epitheliumUBERON:000692299.48gold quality
upper leg skinUBERON:000426299.47gold quality
tibialis anteriorUBERON:000138599.45gold quality
epithelium of esophagusUBERON:000197699.45gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451199.44gold quality
lower esophagus mucosaUBERON:003583499.44gold quality
penisUBERON:000098999.43gold quality
hindlimb stylopod muscleUBERON:000425299.41gold quality
squamous epitheliumUBERON:000691499.41gold quality
vastus lateralisUBERON:000137999.40gold quality
gingival epitheliumUBERON:000194999.37gold quality
quadriceps femorisUBERON:000137799.36gold quality
pylorusUBERON:000116699.34gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450299.34gold quality
gingivaUBERON:000182899.33gold quality
skeletal muscle tissueUBERON:000113499.31gold quality
mammalian vulvaUBERON:000099799.30gold quality
biceps brachiiUBERON:000150799.30gold quality
tracheaUBERON:000312699.28gold quality
lower lobe of lungUBERON:000894999.27gold quality
cardia of stomachUBERON:000116299.22gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-ANND-3yes16.17
E-MTAB-9067yes12.34
E-MTAB-6379no105.39

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ESR2

miRNA regulators (miRDB)

163 targeting MKNK2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-513A-5P100.0069.772465
HSA-MIR-4673100.0066.641490
HSA-MIR-4262100.0073.263931
HSA-MIR-9-5P100.0072.282361
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-6870-5P99.9968.552115
HSA-MIR-27A-3P99.9872.132955
HSA-MIR-27B-3P99.9872.132955
HSA-MIR-998599.9872.112939
HSA-MIR-4645-5P99.9865.811284
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-4650-5P99.9864.69999
HSA-MIR-314899.9775.066478
HSA-MIR-548AN99.9770.912817
HSA-MIR-302E99.9670.742669
HSA-MIR-6825-5P99.9669.813431
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-MIR-495-3P99.9672.814197
HSA-MIR-568899.9673.234504
HSA-MIR-128-3P99.9571.172484
HSA-MIR-216A-3P99.9571.192505
HSA-MIR-651-3P99.9473.485177
HSA-MIR-548J-3P99.9472.614881
HSA-MIR-548AE-3P99.9372.664867
HSA-MIR-548AH-3P99.9372.544872

Literature-anchored findings (GeneRIF, showing 20)

  • The N and C termini of the splice variants of the human mitogen-activated protein kinase-interacting kinase Mnk2 determine activity and localization (PMID:12897141)
  • Mnk2 can interact with CBC(VHL) complex, and is probably one of the new substrates of the CBC(VHL) complex. (PMID:16856496)
  • siRNA-mediated Mnk1/2 knockdown results in partial reversal of the suppressive effects of IFNgamma on human CD34+-derived myeloid (CFU-GM) and erythroid (BFU-E) progenitors. (PMID:21149447)
  • MNK2-dependent phosphorylation of eIF4E represents a novel drug resistance, pro-survival pathway in pancreatic ductal carcinoma. (PMID:22797067)
  • These findings provide evidence for key and essential roles of the Mnk kinase pathway in the generation of the antineoplastic effects of type I IFNs in Jak2V617F-dependent myeloproliferative neoplasms. (PMID:23814052)
  • eIF4E phosphorylation is enhanced by Rapamycin, which activates Mnk2a (PMID:23831578)
  • Provide evidence for the existence of a Mnk2/eIF4E-controlled feedback loop in medulloblastoma cells that accounts for resistance to mTORC1 inhibitors. (PMID:25193863)
  • MNK1 and MNK2 inhibition ablates eIF4E1 phosphorylation and concurrently enhances eIF4E3 expression in diffuse large B-cell lymphoma. (PMID:25403230)
  • Data suggest that a combined pharmacologic inhibition of mTORC1 and Mnk1/2 kinases offers a therapeutic opportunity in blast crisis-chronic myeloid leukemia (BC-CML). (PMID:25527453)
  • Data show that interferon-gamma regulated the metabolism and mRNA translation of macrophages by targeting the kinases mTORC1 and MNK1/2, both of which converge on the selective regulator of translation initiation eukaryotic initiation factor-4E (eIF4E). (PMID:26147685)
  • Data suggest MNK1/MNK2 stimulate mRNA translation but only of mRNA containing both 5-prime-terminal cap and hairpin duplex; this stimulation involves up-regulation of phosphorylation/mRNA un-winding activity of eIF4E (via decreased binding to eIF4G). (PMID:26668315)
  • Data show that galeterone (gal) and VNPT55 inhibit migration and invasion of prostate cancer cells, possibly by down-regulating protein expression via antagonizing the Mnk1/2-eIF4E axis. (PMID:27618366)
  • We conclude that MNK2 overexpression in NSCLC is associated with proliferation, migration, invasion, and lower survival rates in patients via the phosphorylated eIF4E-mediated signaling pathway. (PMID:28878291)
  • Induction of Mnk2a by splice switching oligonucleotides in glioblastoma cells activated the p38-MAPK pathway, inhibited the oncogenic properties of the cells, re-sensitized the cells to chemotherapy and inhibited glioblastoma development in vivo (PMID:30329087)
  • Reciprocal signaling between mTORC1 and MNK2 controls cell growth and oncogenesis. (PMID:32170339)
  • MNK1 and MNK2 enforce expression of E2F1, FOXM1, and WEE1 to drive soft tissue sarcoma. (PMID:33564073)
  • SRPK1/2 and PP1alpha exert opposite functions by modulating SRSF1-guided MKNK2 alternative splicing in colon adenocarcinoma. (PMID:33602301)
  • MKNK2 enhances chemoresistance of ovarian cancer by suppressing autophagy via miR-125b. (PMID:33836345)
  • MNK1 and MNK2 Expression in the Human Dorsal Root and Trigeminal Ganglion. (PMID:36764601)
  • RBM25 depletion suppresses the growth of colon cancer cells through regulating alternative splicing of MNK2. (PMID:39110401)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_reriomknk2aENSDARG00000011373
danio_reriomknk2bENSDARG00000015164
mus_musculusMknk2ENSMUSG00000020190
rattus_norvegicusMknk2ENSRNOG00000029028
drosophila_melanogasterLk6FBGN0017581
caenorhabditis_elegansWBGENE00011304

Paralogs (6): DCX (ENSG00000077279), MKNK1 (ENSG00000079277), MAPKAPK5 (ENSG00000089022), MAPKAPK3 (ENSG00000114738), CAMK4 (ENSG00000152495), MAPKAPK2 (ENSG00000162889)

Protein

Protein identifiers

MAP kinase-interacting serine/threonine-protein kinase 2Q9HBH9 (reviewed: Q9HBH9)

Alternative names: MAP kinase signal-integrating kinase 2

All UniProt accessions (6): Q9HBH9, K7EIN7, K7EJ98, K7EK27, K7EMP5, Q9NV89

UniProt curated annotations — full annotation on UniProt →

Function. Serine/threonine-protein kinase that phosphorylates SFPQ/PSF, HNRNPA1 and EIF4E. May play a role in the response to environmental stress and cytokines. Appears to regulate translation by phosphorylating EIF4E, thus increasing the affinity of this protein for the 7-methylguanosine-containing mRNA cap. Required for mediating PP2A-inhibition-induced EIF4E phosphorylation. Triggers EIF4E shuttling from cytoplasm to nucleus. Isoform 1 displays a high basal kinase activity, but isoform 2 exhibits a very low kinase activity. Acts as a mediator of the suppressive effects of IFNgamma on hematopoiesis. Negative regulator for signals that control generation of arsenic trioxide As(2)O(3)-dependent apoptosis and anti-leukemic responses. Involved in anti-apoptotic signaling in response to serum withdrawal.

Subunit / interactions. Monomer. Interacts with the C-terminal regions of EIF4G1 and EIF4G2; this interaction is promoted when MAPK pathways are repressed but repressed upon ERK proteins activation. Also binds to dephosphorylated MAPK3/ERK1 and MAPK1/ERK2. Isoform 1 interaction with phosphorylated MAPK3/ERK1 and MAPK1/ERK2 protects it from dephosphorylation and inactivation. Isoform 2 interacts with ESR2 and EIF4E in the nucleus.

Subcellular location. Nucleus. PML body Cytoplasm.

Tissue specificity. Ubiquitously expressed in all tissues examined. Isoform 2 is expressed at higher levels in the ovary than is isoform 1.

Post-translational modifications. Dual phosphorylation of Thr-244 and Thr-249 activates the kinase. Phosphorylation of Thr-379 activates the kinase. Phosphorylated upon arsenic trioxide As(2)O(3) treatment. Phosphorylated by MAPK1/ERK2, MAPK11 and MAPK14. Dephosphorylated by PP2A.

Activity regulation. Inhibited by CGP57380 and staurosporine. Activated by phosphorylation in a negative-feedback regulatory manner in response to chemotherapy (e.g. cytarabine) and thus impairs the generation of antileukemic responses.

Cofactor. Binds 1 zinc ion per subunit.

Similarity. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.

Isoforms (5)

UniProt IDNamesCanonical?
Q9HBH9-11, 2ayes
Q9HBH9-22, 2b
Q9HBH9-33
Q9HBH9-44
Q9HBH9-55

RefSeq proteins (2): NP_060042, NP_951009* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000719Prot_kinase_domDomain
IPR008271Ser/Thr_kinase_ASActive_site
IPR011009Kinase-like_dom_sfHomologous_superfamily
IPR017441Protein_kinase_ATP_BSBinding_site
IPR050205CDPK_Ser/Thr_kinasesFamily

Pfam: PF00069

Catalyzed reactions (Rhea), 2 shown:

  • L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
  • L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)

UniProt features (58 total): helix 13, strand 12, binding site 7, modified residue 7, mutagenesis site 4, sequence variant 3, turn 3, splice variant 2, short sequence motif 2, chain 1, domain 1, region of interest 1, sequence conflict 1, active site 1

Structure

Experimental structures (PDB)

15 structures.

PDBMethodResolution (Å)
2AC3X-RAY DIFFRACTION2.1
8P9BX-RAY DIFFRACTION2.59
8XFMX-RAY DIFFRACTION2.6
2HW7X-RAY DIFFRACTION2.71
6CJ5X-RAY DIFFRACTION2.8
6CK3X-RAY DIFFRACTION2.9
6JLRX-RAY DIFFRACTION2.9
6CKIX-RAY DIFFRACTION2.95
6CJYX-RAY DIFFRACTION3.05
9HRCX-RAY DIFFRACTION3.16
2AC5X-RAY DIFFRACTION3.2
6CK6X-RAY DIFFRACTION3.32
6CJEX-RAY DIFFRACTION3.36
6CJWX-RAY DIFFRACTION3.38
6CJHX-RAY DIFFRACTION3.6

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9HBH9-F171.740.40

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 205 (proton acceptor)

Ligand- & substrate-binding residues (7): 299; 311; 314; 90–98; 113; 160–162; 209

Post-translational modifications (7): 74, 244, 249, 379, 437, 440, 452

Mutagenesis-validated functional residues (4):

PositionPhenotype
228reduced phosphorylation.
244loss of kinase activity; when associated with t-249.
249loss of kinase activity; when associated with t-244.
379constitutively active.

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 324 (showing top): RNGTGGGC_UNKNOWN, CCAWYNNGAAR_UNKNOWN, KEGG_MAPK_SIGNALING_PATHWAY, SHEPARD_CRASH_AND_BURN_MUTANT_UP, GOBP_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, SARRIO_EPITHELIAL_MESENCHYMAL_TRANSITION_DN, CTATGCA_MIR153, GGGTGGRR_PAX4_03, MODULE_503, GOBP_TRANSLATION, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A5, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, GERY_CEBP_TARGETS, RICKMAN_METASTASIS_DN, UEDA_PERIFERAL_CLOCK

GO Biological Process (8): regulation of translation (GO:0006417), protein phosphorylation (GO:0006468), cell surface receptor signaling pathway (GO:0007166), hemopoiesis (GO:0030097), intracellular signal transduction (GO:0035556), cellular response to arsenic-containing substance (GO:0071243), extrinsic apoptotic signaling pathway in absence of ligand (GO:0097192), apoptotic process (GO:0006915)

GO Molecular Function (12): protein serine/threonine kinase activity (GO:0004674), calcium/calmodulin-dependent protein kinase activity (GO:0004683), calmodulin binding (GO:0005516), ATP binding (GO:0005524), calcium-dependent protein serine/threonine kinase activity (GO:0009931), metal ion binding (GO:0046872), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)

GO Cellular Component (5): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), nuclear body (GO:0016604), PML body (GO:0016605)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
signal transduction2
intracellular anatomical structure2
protein kinase activity2
protein serine/threonine kinase activity2
cellular anatomical structure2
translation1
post-transcriptional regulation of gene expression1
regulation of protein metabolic process1
phosphorylation1
protein modification process1
cell development1
response to arsenic-containing substance1
cellular response to chemical stimulus1
signal transduction in absence of ligand1
extrinsic apoptotic signaling pathway1
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
protein binding1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
cation binding1
nucleoside phosphate binding1
heterocyclic compound binding1
kinase activity1
phosphotransferase activity, alcohol group as acceptor1
catalytic activity, acting on a protein1
binding1
transferase activity, transferring phosphorus-containing groups1
catalytic activity1
intracellular membrane-bounded organelle1
nuclear lumen1
nucleoplasm1
intracellular membraneless organelle1
nuclear body1

Protein interactions and networks

STRING

1098 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MKNK2ATP7AQ04656796
MKNK2EIF4G1Q04637786
MKNK2EIF4EP06730783
MKNK2EIF4G2P78344619
MKNK2SRSF1Q07955549
MKNK2IPO7O95373548
MKNK2NEK4P51957535
MKNK2MAP2K1Q02750518
MKNK2UBTFP17480504
MKNK2MAPKAP1Q9BPZ7459
MKNK2EIF4EBP2Q13542456
MKNK2CDK4P11802455
MKNK2MAP2K2P36507447
MKNK2MST1RQ04912447
MKNK2SRPK1Q96SB4436

IntAct

20 interactions, top by confidence:

ABTypeScore
MAPK14OBSL1psi-mi:“MI:0914”(association)0.790
MKNK2MAPK14psi-mi:“MI:2364”(proximity)0.790
SRPK1MKNK2psi-mi:“MI:0217”(phosphorylation reaction)0.440
LRRK2MKNK2psi-mi:“MI:0407”(direct interaction)0.440
MAPK8MKNK2psi-mi:“MI:0915”(physical association)0.370
MKNK2WWP2psi-mi:“MI:0914”(association)0.350
MKNK2WDR46psi-mi:“MI:0914”(association)0.350
MAPK14PRKYpsi-mi:“MI:0914”(association)0.350
MAPK3HMMRpsi-mi:“MI:0914”(association)0.350
MKNK1SEC16Apsi-mi:“MI:0914”(association)0.350
MKNK2MAPK3psi-mi:“MI:0914”(association)0.350
CUL4BGGTLC3psi-mi:“MI:0914”(association)0.350
GAPDHERLIN2psi-mi:“MI:0914”(association)0.350
MAPK1SPAG9psi-mi:“MI:0914”(association)0.350
MKNK2sydpsi-mi:“MI:0915”(physical association)0.000
MKNK2MAPK14psi-mi:“MI:0915”(physical association)0.000
MKNK2RPL7Apsi-mi:“MI:0915”(physical association)0.000
MKNK2MKNK2psi-mi:“MI:0915”(physical association)0.000

BioGRID (67): MKNK2 (Affinity Capture-MS), CSTF2 (Affinity Capture-MS), MIF (Affinity Capture-MS), RBM4 (Affinity Capture-MS), VCL (Affinity Capture-MS), BAG6 (Affinity Capture-MS), SYMPK (Affinity Capture-MS), KHSRP (Affinity Capture-MS), NOLC1 (Affinity Capture-MS), WDR46 (Affinity Capture-MS), USP15 (Affinity Capture-MS), TRAP1 (Affinity Capture-MS), CELF1 (Affinity Capture-MS), NUDT21 (Affinity Capture-MS), WWP2 (Affinity Capture-MS)

ESM2 similar proteins: A0AAR7, A1A699, A4IGM9, D0N4E2, O08605, O80673, P15735, P31325, P53681, Q10KY3, Q13555, Q21734, Q2KJ16, Q2QQR2, Q2QVG8, Q43531, Q4G050, Q58D94, Q5NTH4, Q5U2N4, Q66JF3, Q6AVM3, Q6F3A6, Q6GPL3, Q6H5L4, Q6I5I8, Q6RET7, Q76L34, Q7XJR9, Q7XSQ5, Q852N6, Q8GVC7, Q8LPZ7, Q8S9F2, Q96GD4, Q96QS6, Q9BUB5, Q9DB30, Q9FIM9, Q9FKW4

Diamond homologs: A0A509AFG4, A0A509AQE6, A0A5K1K8H0, A2ZVI7, D2I3C6, O08605, O15075, O15865, O54992, O75582, O75676, O77708, P08413, P10665, P11275, P11798, P11801, P15791, P18652, P18653, P18654, P25323, P28582, P28652, P49137, P49138, P49139, P51812, P53683, P62345, Q06850, Q0V7M1, Q13554, Q13557, Q15349, Q15418, Q16644, Q18846, Q2HJF7, Q38868

SIGNOR signaling

8 interactions.

AEffectBMechanism
MKNK2up-regulatesEIF4Ephosphorylation
Tomivosertib“down-regulates activity”MKNK2“chemical inhibition”
Gbetaup-regulatesMKNK2phosphorylation
ERK1/2up-regulatesMKNK2phosphorylation
MTOR“down-regulates activity”MKNK2phosphorylation
MAPK1up-regulatesMKNK2phosphorylation
MAPK14up-regulatesMKNK2phosphorylation
MAPK3up-regulatesMKNK2phosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 20 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Infectious disease57.3×2e-03

GO biological processes:

GO termPartnersFoldFDR
MAPK cascade542.6×9e-06
protein phosphorylation622.6×1e-05
intracellular signal transduction612.7×2e-04

Disease & clinical

Clinical variants and AI predictions

ClinVar

102 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance61
Likely benign2
Benign1

Top pathogenic / likely-pathogenic (0)

SpliceAI

1392 predictions. Top by Δscore:

VariantEffectΔscore
19:2039852:TGTTC:Tacceptor_gain1.0000
19:2039857:C:CCacceptor_gain1.0000
19:2040178:C:CCacceptor_gain1.0000
19:2041036:TCA:Tdonor_loss1.0000
19:2041037:CA:Cdonor_loss1.0000
19:2041038:A:ACdonor_gain1.0000
19:2041038:AC:Adonor_gain1.0000
19:2041038:ACC:Adonor_gain1.0000
19:2041038:ACCC:Adonor_gain1.0000
19:2041038:ACCCC:Adonor_gain1.0000
19:2041039:C:CCdonor_gain1.0000
19:2041039:CC:Cdonor_gain1.0000
19:2041039:CCC:Cdonor_gain1.0000
19:2041039:CCCC:Cdonor_gain1.0000
19:2041039:CCCCC:Cdonor_gain1.0000
19:2041080:AG:Adonor_gain1.0000
19:2041081:G:Cdonor_gain1.0000
19:2041200:ATGTT:Aacceptor_gain1.0000
19:2041201:TGTT:Tacceptor_gain1.0000
19:2041202:GTT:Gacceptor_gain1.0000
19:2041203:TT:Tacceptor_gain1.0000
19:2041204:TCTGG:Tacceptor_loss1.0000
19:2041205:C:CAacceptor_loss1.0000
19:2041205:C:CCacceptor_gain1.0000
19:2041212:C:CTacceptor_gain1.0000
19:2041213:A:ACacceptor_gain1.0000
19:2041213:A:Cacceptor_gain1.0000
19:2041834:CCGCA:Cdonor_loss1.0000
19:2041835:CGCA:Cdonor_loss1.0000
19:2041836:GCAC:Gdonor_loss1.0000

AlphaMissense

3076 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
19:2041051:A:GW367R1.000
19:2041051:A:TW367R1.000
19:2041082:C:AR356S1.000
19:2041082:C:GR356S1.000
19:2041083:C:AR356M1.000
19:2041083:C:GR356T1.000
19:2041107:A:GL348P1.000
19:2041119:A:GL344P1.000
19:2041150:A:GW334R1.000
19:2041150:A:TW334R1.000
19:2041900:G:CF295L1.000
19:2041900:G:TF295L1.000
19:2041902:A:GF295L1.000
19:2041904:G:TP294H1.000
19:2041940:C:AG282V1.000
19:2041940:C:TG282D1.000
19:2041941:C:GG282R1.000
19:2041945:G:CS280R1.000
19:2041945:G:TS280R1.000
19:2041947:T:GS280R1.000
19:2041948:C:AW279C1.000
19:2041948:C:GW279C1.000
19:2041950:A:GW279R1.000
19:2041950:A:TW279R1.000
19:2041955:T:AD277V1.000
19:2041955:T:CD277G1.000
19:2041955:T:GD277A1.000
19:2041956:C:AD277Y1.000
19:2041956:C:GD277H1.000
19:2041958:C:TC276Y1.000

dbSNP variants (sampled 300 via entrez): RS1000105851 (19:2047598 G>C), RS1000392159 (19:2039330 C>T), RS1000395692 (19:2047392 G>A), RS1000900316 (19:2050696 G>A,T), RS1000930833 (19:2050865 C>T), RS1001000954 (19:2046383 G>A), RS1001278469 (19:2047906 C>A,T), RS1001379234 (19:2051082 G>A), RS1001431830 (19:2051204 G>A,C), RS1001455913 (19:2043315 A>C,T), RS1001568830 (19:2039536 C>A,G,T), RS1001652931 (19:2047086 C>T), RS1002085980 (19:2051566 C>A,T), RS1002377089 (19:2050194 G>A), RS1002403106 (19:2047194 C>CCCCCAGGACACAGATGT)

Disease associations

OMIM: gene MIM:605069 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

1 associations (top):

StudyTraitp-value
GCST004088_13Nonsyndromic cleft lip with or without cleft palate2.000000e-08

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0003959cleft lip

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (3): CHEMBL3883293 (PROTEIN FAMILY), CHEMBL4204 (SINGLE PROTEIN), CHEMBL6195561 (PROTEIN-PROTEIN INTERACTION)

Molecules with ChEMBL bioactivity

41 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 537,987 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1173655AFATINIB415,144
CHEMBL1287853FEDRATINIB43,554
CHEMBL1336SORAFENIB486,060
CHEMBL1789941RUXOLITINIB411,547
CHEMBL2103743TOFACITINIB CITRATE41,672
CHEMBL221959TOFACITINIB410,408
CHEMBL2403108CERITINIB48,551
CHEMBL24828VANDETANIB442,230
CHEMBL535SUNITINIB479,020
CHEMBL553ERLOTINIB4108,300
CHEMBL576982QUIZARTINIB44,432
CHEMBL608533MIDOSTAURIN47,259
CHEMBL939GEFITINIB4117,814
CHEMBL223360LINIFANIB33,925
CHEMBL31965CANERTINIB38,083
CHEMBL428690ALVOCIDIB327,781
CHEMBL603469LESTAURTINIB3
CHEMBL4073443TOMIVOSERTIB2473
CHEMBL4211649TINODASERTIB253
CHEMBL103667DORAMAPIMOD21,681
CHEMBL1230609FORETINIB2
CHEMBL151LUTEOLIN2
CHEMBL1721885SU-0148132
CHEMBL1738757REBASTINIB2
CHEMBL1967878CENISERTIB2
CHEMBL1980297ILORASERTIB2
CHEMBL215152DEFOSBARASERTIB2
CHEMBL230011TG100-1152
CHEMBL3545307MERESTINIB2
CHEMBL475251R-4062

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — MKN subfamily

Most potent curated ligand interactions (5 total), top 5:

LigandActionAffinityParameter
compound 20j [PMID: 38564512]Inhibition9.4pIC50
tomivosertibInhibition9.0pIC50
tinodasertibInhibition7.07pIC50
MELK-TIInhibition6.12pIC50
MNK1 inhibitorInhibition5.8pIC50

Binding affinities (BindingDB)

843 measured of 1163 human assays (1163 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
1-[2-(4-methylphenyl)-5-tert-butyl-pyrazol-3-yl]-3-[4-(2-morpholin-4-ylethoxy)naphthalen-1-yl]ureaKD0.37 nM
5-chloro-7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-N-[4-fluoro-2-[(2R)-1,1,1-trifluoropropan-2-yl]oxyphenyl]quinazolin-4-amineIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[2-(1,3-difluoropropan-2-yloxy)-4-fluorophenyl]-7-[(4-oxo-1,4-oxathian-4-ylidene)amino]-5-(trifluoromethyl)quinazolin-4-amineIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
5-methyl-N-[2-(oxolan-3-ylmethoxy)-3-pyridinyl]-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-amineIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[4-fluoro-2-[(1R)-1-(3-methyl-1,2-oxazol-5-yl)ethoxy]phenyl]-5-methyl-7-[(1-oxo-1,4-thiazinan-1-ylidene)amino]quinazolin-4-amineIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[2-[[7-[[(3S)-3-amino-1-oxothiolan-1-ylidene]amino]-5-methylquinazolin-4-yl]amino]-5-fluorophenoxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(cyanomethyl)-2-[2-[[7-[(3,3-dimethyl-1-oxothietan-1-ylidene)amino]-5-fluoroquinazolin-4-yl]amino]-5-fluorophenoxy]propanamideIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
methyl 2-[4-[4-fluoro-2-[(2R)-1-oxo-1-(2,2,2-trifluoroethylamino)propan-2-yl]oxyanilino]-5-methylquinazolin-7-yl]imino-2-oxo-2lambda6-thia-6-azaspiro[3.3]heptane-6-carboxylateIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[7-[(3,3-dimethyl-1-oxothietan-1-ylidene)amino]-5-methylquinazolin-4-yl]amino]phenoxy]-N-[(2S)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9139577: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(1,1,1,3,3,3-hexafluoropropan-2-yl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[2-[[7-[(3,3-dimethyl-1-oxothietan-1-ylidene)amino]-5-methylquinazolin-4-yl]amino]-5-fluorophenoxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[5-methyl-7-[(2-oxo-6-oxa-2lambda6-thiaspiro[3.3]heptan-2-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-[(2S)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
2-[2-[[7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-5-methylquinazolin-4-yl]amino]-5-fluorophenoxy]acetonitrileIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-N-[4-fluoro-2-(oxan-2-ylmethoxy)phenyl]-5-methylquinazolin-4-amineIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[2-[(2R)-1-aminopropan-2-yl]oxy-4-fluorophenyl]-7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-5-methylquinazolin-4-amineIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-fluoro-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-prop-2-ynylpropanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(2,2-difluoroethyl)-2-[2-[[7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-5-methylquinazolin-4-yl]amino]-5-fluorophenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(cyanomethyl)-2-[2-[[7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-5-methylquinazolin-4-yl]amino]-5-fluorophenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-propan-2-ylpropanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-butan-2-yl-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-[(2S)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(3,3,3-trifluoropropyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[2-[[5-chloro-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-5-fluorophenoxy]-N-[(2R)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[2-[[5-chloro-7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]quinazolin-4-yl]amino]-5-fluorophenoxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[5-fluoro-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-[(1S)-1-cyanoethyl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[[6-chloro-3-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-2-pyridinyl]oxy]-N-[(2S)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[2-[[5-chloro-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-5-fluorophenoxy]-N-[(2S)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(cyanomethyl)-2-[5-fluoro-2-[[5-fluoro-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(cyanomethyl)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-[(2S)-1,1,1-trifluoropropan-2-yl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(2,2-difluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-[(1R)-1-cyanoethyl]-2-[5-fluoro-2-[[5-fluoro-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[[6-chloro-3-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-2-pyridinyl]oxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-chloro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(1,1-difluoropropan-2-yl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(1,3-difluoropropan-2-yl)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(1-cyanoethyl)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[2-[[5-chloro-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-5-fluorophenoxy]-N-[(1S)-1-cyanoethyl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]-N-(2,2,2-trifluoroethyl)propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-2-[[6-chloro-3-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-2-pyridinyl]oxy]-N-[(1S)-1-cyanoethyl]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(2R)-N-(2,2-difluoroethyl)-2-[5-fluoro-2-[[5-methyl-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]phenoxy]propanamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[(2S)-2-[2-[[7-[[dimethyl(oxo)-lambda6-sulfanylidene]amino]-5-methylquinazolin-4-yl]amino]-5-fluorophenoxy]propyl]methanesulfonamideIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[4-fluoro-2-[(1R)-1-(3-methyl-1,2-oxazol-5-yl)ethoxy]phenyl]-5-methyl-7-[(4-methyl-1-oxo-1,4-thiazinan-1-ylidene)amino]quinazolin-4-amineIC501 nMUS-9708274: Sulfoximine substituted quinazolines for pharmaceutical compositions
(3R,4R)-4-[2-[[5-chloro-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-5-fluorophenoxy]oxolan-3-olIC501 nMUS-10093660: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[2-[(3R,4S)-4-methoxyoxolan-3-yl]oxy-3-pyridinyl]-5-methyl-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-amineIC501 nMUS-10093660: Sulfoximine substituted quinazolines for pharmaceutical compositions
(3S,4S)-4-[[6-chloro-3-[[5-methoxy-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-yl]amino]-2-pyridinyl]oxy]oxolan-3-olIC501 nMUS-10093660: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[2-[[(3aR,6R,6aS)-2,3,3a,5,6,6a-hexahydrofuro[3,2-b]furan-6-yl]oxy]-4-fluorophenyl]-6-methoxy-5-methyl-7-[(1-oxothiolan-1-ylidene)amino]quinazolin-4-amineIC501.2 nMUS-10167296: Sulfoximine substituted quinazolines for pharmaceutical compositions
1-[4-[2-[[(3aR,6R,6aS)-2,3,3a,5,6,6a-hexahydrofuro[3,2-b]furan-6-yl]oxy]-4-fluoroanilino]-6-methoxy-5-methylquinazolin-7-yl]imino-1-oxothian-4-olIC501.2 nMUS-10167296: Sulfoximine substituted quinazolines for pharmaceutical compositions
N-[2-[[(3R,3aR,6R,6aR)-3-methoxy-2,3,3a,5,6,6a-hexahydrofuro[3,2-b]furan-6-yl]oxy]-4-fluorophenyl]-5-chloro-6-methoxy-7-[(1-oxothietan-1-ylidene)amino]quinazolin-4-amineIC501.3 nMUS-10167296: Sulfoximine substituted quinazolines for pharmaceutical compositions

ChEMBL bioactivities

2245 potent at pChembl≥5 of 2266 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.08IC500.084nMCHEMBL4086747
9.89IC500.13nMCHEMBL4094975
9.85IC500.14nMCHEMBL4067557
9.51IC500.31nMCHEMBL4073743
9.44IC500.36nMCHEMBL4086747
9.40IC500.4nMCHEMBL5559028
9.30IC500.5nMCHEMBL5561551
9.22EC500.6nMCHEMBL3800585
9.22IC500.6nMCHEMBL5556268
9.21IC500.62nMCHEMBL4094975
9.19IC500.64nMCHEMBL5561655
9.17IC500.68nMCHEMBL4076439
9.15IC500.7nMCHEMBL3797873
9.15IC500.7nMCHEMBL5560746
9.10IC500.79nMCHEMBL4076439
9.10IC500.8nMCHEMBL5825302
9.00IC501nMCHEMBL3798762
9.00IC501nMCHEMBL4111493
9.00IC501nMCHEMBL4113944
9.00IC501nMCHEMBL4109804
9.00IC501nMCHEMBL3969508
9.00IC501nMCHEMBL3916533
9.00IC501nMCHEMBL4112682
9.00IC501nMCHEMBL4112720
9.00IC501nMCHEMBL4106829
9.00IC501nMCHEMBL4111586
9.00IC501nMCHEMBL4110377
9.00IC501nMCHEMBL4114582
9.00IC501nMCHEMBL4107908
9.00IC501nMCHEMBL4111078
9.00IC501nMCHEMBL4108347
9.00IC501nMCHEMBL4110758
9.00IC501nMCHEMBL4108416
9.00IC501nMCHEMBL3963888
9.00IC501nMCHEMBL3926461
9.00IC501nMCHEMBL4114923
9.00IC501nMCHEMBL3904562
9.00IC501nMCHEMBL4112632
9.00IC501nMCHEMBL4107951
9.00IC501nMCHEMBL4108049
9.00IC501nMCHEMBL4111906
9.00IC501nMCHEMBL4110019
9.00IC501nMCHEMBL4109353
9.00IC501nMCHEMBL4111615
9.00IC501nMCHEMBL4115507
9.00IC501nMCHEMBL4109890
9.00IC501nMCHEMBL4111236
9.00IC501nMCHEMBL4106658
9.00IC501nMCHEMBL4110073
9.00IC501nMCHEMBL4115641

PubChem BioAssay actives

636 with measured affinity, of 2607 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
6-[(6-aminopyrimidin-4-yl)amino]-8-chloro-3,3-dimethyl-2H-imidazo[1,5-a]pyridine-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0001uM
6-[(6-aminopyrimidin-4-yl)amino]-8-chlorospiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclopentane]-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0001uM
6-[(6-amino-5-chloropyrimidin-4-yl)amino]-8-chlorospiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-1,5-dione1479626: Inhibition of MNK1/2 in human HCT116 cells assessed as decrease in eIF4E phosphorylation at Ser209 after 2 hrs by HTRF assayic500.0001uM
N-[6-[(8-chloro-1,5-dioxospiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-6-yl)amino]pyrimidin-4-yl]cyclopropanecarboxamide1479626: Inhibition of MNK1/2 in human HCT116 cells assessed as decrease in eIF4E phosphorylation at Ser209 after 2 hrs by HTRF assayic500.0003uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]-(4-piperidin-1-ylpiperidin-1-yl)methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0004uM
(4-aminopiperidin-1-yl)-[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0005uM
2-[5-amino-6-[1-methyl-7-[(3S)-3-methylpiperazin-1-yl]benzimidazol-2-yl]pyrazin-2-yl]-N,N-dimethylpyridine-4-carboxamide1296847: Inhibition of MNK1/2 in human KMS11-luc cells assessed as inhibition of EIF4E phosphorylation at S209 after 3 hrs by quantitative electrochemiluminescence assayec500.0006uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]-piperazin-1-ylmethanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0006uM
(4-aminopiperidin-1-yl)-[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyridin-6-yl]phenyl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0006uM
6-[(6-aminopyrimidin-4-yl)amino]-8-chlorospiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0007uM
3-[5-amino-6-[1-methyl-7-[(3S)-3-methylpiperazin-1-yl]benzimidazol-2-yl]pyrazin-2-yl]-N,N-dimethylbenzamide1296842: Inhibition of N-terminal 6His-tagged recombinant human full length wild type MNK2b using biotin-SGSGKRREILSRRPSYR-NH2 as substrate after 1 hr by HTRF assayic500.0007uM
[(3R)-3-aminopiperidin-1-yl]-[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0007uM
6-[(6-aminopyrimidin-4-yl)amino]-8-methylspiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0010uM
6-[(6-aminopyrimidin-4-yl)amino]-8-methylspiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-1,5-dione;hydrochloride1534878: Inhibition of MNK2 (unknown origin) expressed in HEK293 cells assessed as decrease in eIF4E phosphorylation at Ser209 residues by Western blot analysisic500.0010uM
6-[(6-aminopyrimidin-4-yl)amino]-4’,4’-difluoro-8-methylspiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0010uM
3-[5-amino-6-(1-methyl-7-piperazin-1-ylbenzimidazol-2-yl)pyrazin-2-yl]-N,N-dimethylbenzamide1296842: Inhibition of N-terminal 6His-tagged recombinant human full length wild type MNK2b using biotin-SGSGKRREILSRRPSYR-NH2 as substrate after 1 hr by HTRF assayic500.0010uM
8-chloro-3,3-dimethyl-6-(pyrimidin-4-ylamino)-2H-imidazo[1,5-a]pyridine-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0012uM
N-[6-[[8-chloro-3-(3-chlorophenyl)-3-methyl-1,5-dioxo-2H-imidazo[1,5-a]pyridin-6-yl]amino]pyrimidin-4-yl]cyclopropanecarboxamide1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0012uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]-[4-(dimethylamino)piperidin-1-yl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0012uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyridin-6-yl]phenyl]-[4-(dimethylamino)piperidin-1-yl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0013uM
(15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one507624: Binding affinity to MKNK2kd0.0014uM
[4-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]-morpholin-4-ylmethanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0014uM
8-chloro-6-(pyrimidin-4-ylamino)spiro[2H-imidazo[1,5-a]pyridine-3,1’-cyclohexane]-1,5-dione1552931: Competitive inhibition of recombinant His-tagged MNK2 (unknown origin) using eIF4E derived peptide as substrate at concentration of Km/10 in presence of ATP by ADP-Glo assayic500.0015uM
[(3S)-3-aminopiperidin-1-yl]-[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0015uM
[4-(3-isoquinolin-6-ylimidazo[1,2-a]pyridin-6-yl)phenyl]-(4-piperidin-1-ylpiperidin-1-yl)methanone1763881: Inhibition of N-terminal GST-fused human full length recombinant MNK2 (1 to 465 residues) expressed in baculovirus-infected Sf21 cells using TATKSGSTTKNR as substrate preincubated with enzyme and substrate for 10 mins followed by ATP addition and measured after 40 mins by ADP-glo luminescence assayic500.0015uM
[3-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]-piperazin-1-ylmethanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0015uM
[4-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]-piperazin-1-ylmethanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0016uM
[(3R)-3-aminopiperidin-1-yl]-[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyridin-6-yl]phenyl]methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0016uM
[3-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]-morpholin-4-ylmethanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0018uM
[(3S)-3-aminopiperidin-1-yl]-[4-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]methanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0019uM
3-[6-amino-5-(4-piperazin-1-yl-1H-benzimidazol-2-yl)-3-pyridinyl]-N,N-dimethylbenzamide1296842: Inhibition of N-terminal 6His-tagged recombinant human full length wild type MNK2b using biotin-SGSGKRREILSRRPSYR-NH2 as substrate after 1 hr by HTRF assayic500.0020uM
N-[3-(dimethylamino)propyl]-7-(5-fluoro-2,3-dihydroindol-1-yl)-[1,3]thiazolo[5,4-d]pyrimidine-2-carboxamide1881761: Inhibition of Mnk2 (unknown origin)ic500.0020uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyrazin-6-yl]phenyl]-morpholin-4-ylmethanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0020uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyridin-6-yl]phenyl]-(4-methylpiperazin-1-yl)methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0022uM
N-[6-[(3,3-dimethyl-1,5-dioxo-2H-imidazo[1,5-a]pyridin-6-yl)amino]pyrimidin-4-yl]cyclopropanecarboxamide1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0023uM
[(3R)-3-aminopiperidin-1-yl]-[4-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]methanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0023uM
7-(3,3-dimethyl-2H-indol-1-yl)-N-(piperidin-4-ylmethyl)-[1,3]thiazolo[5,4-d]pyrimidine-2-carboxamide1881761: Inhibition of Mnk2 (unknown origin)ic500.0025uM
[(3S)-3-aminopiperidin-1-yl]-[4-(3-isoquinolin-6-ylimidazo[1,2-a]pyridin-6-yl)phenyl]methanone1763881: Inhibition of N-terminal GST-fused human full length recombinant MNK2 (1 to 465 residues) expressed in baculovirus-infected Sf21 cells using TATKSGSTTKNR as substrate preincubated with enzyme and substrate for 10 mins followed by ATP addition and measured after 40 mins by ADP-glo luminescence assayic500.0025uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyridin-6-yl]phenyl]-piperazin-1-ylmethanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0025uM
8-fluoro-3,3-dimethyl-6-(pyrimidin-4-ylamino)-2H-imidazo[1,5-a]pyridine-1,5-dione1479625: Inhibition of full length N-terminal GST-tagged recombinant human MNK2 expressed in baculovirus expression system using Ac-TATKSGSTTKNR-NH2 as substrate preincubated for 5 mins followed by ATP addition measured after 40 mins by ADP-Glo assayic500.0026uM
4-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]-N-(3-hydroxypropyl)benzamide2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0029uM
[4-(3-isoquinolin-6-ylimidazo[1,2-a]pyridin-6-yl)phenyl]-piperazin-1-ylmethanone1763881: Inhibition of N-terminal GST-fused human full length recombinant MNK2 (1 to 465 residues) expressed in baculovirus-infected Sf21 cells using TATKSGSTTKNR as substrate preincubated with enzyme and substrate for 10 mins followed by ATP addition and measured after 40 mins by ADP-glo luminescence assayic500.0029uM
1-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[6-(methylamino)pyrimidin-4-yl]oxyphenyl]urea435531: Binding constant for MKNK2 kinase domainkd0.0030uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-b]pyridazin-6-yl]phenyl]-(4-morpholin-4-ylpiperidin-1-yl)methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0031uM
7-(5-chloro-2,3-dihydroindol-1-yl)-N-(piperidin-4-ylmethyl)-[1,3]thiazolo[5,4-d]pyrimidine-2-carboxamide1881761: Inhibition of Mnk2 (unknown origin)ic500.0032uM
[4-(3-isoquinolin-6-ylimidazo[1,2-a]pyridin-6-yl)phenyl]-(4-morpholin-4-ylpiperidin-1-yl)methanone1763881: Inhibition of N-terminal GST-fused human full length recombinant MNK2 (1 to 465 residues) expressed in baculovirus-infected Sf21 cells using TATKSGSTTKNR as substrate preincubated with enzyme and substrate for 10 mins followed by ATP addition and measured after 40 mins by ADP-glo luminescence assayic500.0032uM
[4-[3-(1-benzofuran-2-yl)imidazo[1,2-a]pyridin-6-yl]phenyl]-(4-morpholin-4-ylpiperidin-1-yl)methanone2083031: Inhibition of recombinant MNK2 (unknown origin) using TATKSGSTTKNR as substrate preincubated for 15 mins followed by ATP addition and measured after 1 hr by ADP-glo kinase assayic500.0033uM
[(3S)-3-aminopiperidin-1-yl]-[4-(3-isoquinolin-6-ylimidazo[1,2-b]pyridazin-6-yl)phenyl]methanone1763881: Inhibition of N-terminal GST-fused human full length recombinant MNK2 (1 to 465 residues) expressed in baculovirus-infected Sf21 cells using TATKSGSTTKNR as substrate preincubated with enzyme and substrate for 10 mins followed by ATP addition and measured after 40 mins by ADP-glo luminescence assayic500.0034uM
[3-[4-(5-fluoro-2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]-piperazin-1-ylmethanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0035uM
[(3S)-3-aminopyrrolidin-1-yl]-[4-[4-(2,3-dihydroindol-1-yl)pyrido[3,2-d]pyrimidin-6-yl]phenyl]methanone2064722: Inhibition of Mnk2 (unknown origin) incubated for 60 mins in presence of ATP/substrateby HTRF assayic500.0036uM

CTD chemical–gene interactions

69 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteaffects expression, decreases expression, affects cotreatment, increases abundance, increases expression6
Estradiolaffects cotreatment, decreases expression, increases expression3
bisphenol Aincreases expression2
(+)-JQ1 compoundincreases expression2
Acetaminophenincreases expression2
Arsenicincreases expression, affects cotreatment, increases abundance2
Quercetinincreases expression, decreases expression2
Valproic Acidaffects expression, increases methylation2
Cyclosporineincreases expression2
FR900359decreases phosphorylation1
triphenyl phosphateaffects expression1
deoxynivalenoldecreases expression1
sodium arsenateincreases abundance, increases expression1
trichostatin Aaffects expression1
beta-lapachoneincreases expression1
11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acidaffects methylation, increases abundance1
cobaltous chlorideincreases expression1
manganese chlorideincreases abundance, increases expression, affects cotreatment1
benzo(e)pyrenedecreases methylation1
2,3-bis(3’-hydroxybenzyl)butyrolactonedecreases expression, affects cotreatment1
perfluorooctane sulfonic acidincreases expression1
perfluoro-n-nonanoic acidincreases expression1
ICG 001increases expression1
abrinedecreases expression1
bisphenol AFdecreases expression1
4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acidincreases expression1
Resveratrolaffects cotreatment, decreases expression1
Decitabineaffects expression1
Sunitinibincreases expression1
Arsenic Trioxideincreases activity, increases phosphorylation, increases reaction, decreases response to substance1

ChEMBL screening assays

519 unique, capped per target: 518 binding, 1 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3803169BindingInhibition of MNK1/2 in human KMS11-luc cells assessed as inhibition of EIF4E phosphorylation at S209 after 3 hrs by quantitative electrochemiluminescence assayDiscovery of a Selective and Potent Inhibitor of Mitogen-Activated Protein Kinase-Interacting Kinases 1 and 2 (MNK1/2) Utilizing Structure-Based Drug Design. — J Med Chem
CHEMBL1963786FunctionalPUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: MKNK2PubChem BioAssay data set

Cellosaurus cell lines

7 cell lines: 5 cancer cell line, 2 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B3B1Abcam HEK293T MKNK2 KOTransformed cell lineFemale
CVCL_D7V4Ubigene A-549 MKNK2 KOCancer cell lineMale
CVCL_D8QNUbigene HCT 116 MKNK2 KOCancer cell lineMale
CVCL_D9KDUbigene HEK293 MKNK2 KOTransformed cell lineFemale
CVCL_E0I5Ubigene HeLa MKNK2 KOCancer cell lineFemale
CVCL_SY50HAP1 MKNK2 (-) 1Cancer cell lineMale
CVCL_SY51HAP1 MKNK2 (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.