MMAB
gene geneOn this page
Also known as cblBCFAP23
Summary
MMAB (metabolism of cobalamin associated B, HGNC:19331) is a protein-coding gene on chromosome 12q24.11, encoding Corrinoid adenosyltransferase MMAB (Q96EY8). Converts cob(I)alamin to adenosylcobalamin (adenosylcob(III)alamin), a coenzyme for methylmalonyl-CoA mutase, therefore participates in the final step of the vitamin B12 conversion.
This gene encodes a protein that catalyzes the final step in the conversion of vitamin B(12) into adenosylcobalamin (AdoCbl), a vitamin B12-containing coenzyme for methylmalonyl-CoA mutase. Mutations in the gene are the cause of vitamin B12-dependent methylmalonic aciduria linked to the cblB complementation group. Alternatively spliced transcript variants have been found.
Source: NCBI Gene 326625 — RefSeq curated summary.
At a glance
- Gene–disease (curated): methylmalonic aciduria, cblB type (Definitive, ClinGen)
- GWAS associations: 29 (top 4% of genes corpus-wide)
- Clinical variants (ClinVar): 610 total — 52 pathogenic, 44 likely-pathogenic (top 5% of genes corpus-wide)
- GTEx eGene: eQTL in 37 tissues, sQTL in 50 (q < 0.05)
- Phenotypes (HPO): 34
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.87 (unconstrained)
- MANE Select transcript:
NM_052845
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19331 |
| Approved symbol | MMAB |
| Name | metabolism of cobalamin associated B |
| Location | 12q24.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | cblB, CFAP23 |
| Ensembl gene | ENSG00000139428 |
| Ensembl biotype | protein_coding |
| OMIM | 607568 |
| Entrez | 326625 |
Gene structure
Transcript identifiers
Ensembl transcripts: 47 — 29 nonsense_mediated_decay, 16 protein_coding, 2 retained_intron
MANE Select: ENST00000545712
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1, TSL 2: 3, TSL 3: 4, TSL 4: 1, TSL 5: 1
ENST00000545712, ENST00000420167, ENST00000503497, ENST00000536760, ENST00000537236, ENST00000537496, ENST00000540016, ENST00000541763, ENST00000542390, ENST00000544051, ENST00000878519, ENST00000878520, ENST00000985155, ENST00000985156, ENST00000985157, ENST00000985158, ENST00000985159, ENST00000985160, ENST00000985161, ENST00000985162, ENST00000985163, ENST00000985164, ENST00000985165, ENST00000985166, ENST00000985167, ENST00000985168, ENST00000985169, ENST00000985171, ENST00000985172, ENST00000985173, ENST00000985174, ENST00000985175, ENST00000985176, ENST00001030013, ENST00001030014, ENST00001030015, ENST00001030016, ENST00001090255, ENST00001090256, ENST00001092480, ENST00001111280, ENST00001111281, ENST00001118748, ENST00001118749, ENST00001129655, ENST00001129656, ENST00001139899
RefSeq mRNA: 1 — MANE Select: NM_052845
NM_052845
CCDS: CCDS9131
Canonical transcript exons
ENST00000545712 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002267773 | 109553715 | 109557136 |
| ENSE00003481491 | 109561420 | 109561517 |
| ENSE00003541962 | 109568770 | 109568863 |
| ENSE00003546036 | 109561780 | 109561852 |
| ENSE00003583295 | 109571649 | 109571710 |
| ENSE00003587859 | 109573347 | 109573504 |
| ENSE00003671438 | 109559096 | 109559155 |
| ENSE00003672319 | 109561040 | 109561104 |
| ENSE00003688708 | 109565119 | 109565176 |
Expression profiles
Bgee: expression breadth ubiquitous, 235 present calls, max score 97.41.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 25.4007 / max 250.7676, expressed in 1802 samples.
Highest expression (Bgee): lobe of liver, adrenal gland cortex, adrenal gland, adrenal tissue, adrenal cortex.
Genetic regulation across tissues (GTEx eQTL / sQTL)
MMAB is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 37 tissues and its splicing (sQTL) in 50 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 87 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Muscle Skeletal | sqtl | 1.1e-228 | +1.71 | 12:109561263:G:A |
| Esophagus Mucosa | sqtl | 1.9e-217 | -1.98 | 12:109570134:A:G |
| Thyroid | sqtl | 6.7e-208 | +1.78 | 12:109561263:G:A |
| Cells Cultured fibroblasts | sqtl | 6.7e-189 | +1.71 | 12:109554344:C:G |
| Skin Not Sun Exposed Suprapubic | sqtl | 1.1e-187 | -1.84 | 12:109570134:A:G |
| Skin Sun Exposed Lower leg | sqtl | 7.8e-187 | -1.76 | 12:109561232:G:A |
| Artery Tibial | sqtl | 1.1e-182 | +1.72 | 12:109561263:G:A |
| Adipose Subcutaneous | sqtl | 9.7e-181 | -1.75 | 12:109561263:G:A |
| Esophagus Muscularis | sqtl | 7.0e-163 | +1.71 | 12:109564328:C:T |
| Nerve Tibial | sqtl | 6.8e-152 | +1.71 | 12:109561263:G:A |
| Adipose Visceral Omentum | sqtl | 2.3e-151 | +1.74 | 12:109560042:C:T |
| Heart Atrial Appendage | sqtl | 3.4e-141 | +1.78 | 12:109560042:C:T |
| Colon Transverse | sqtl | 4.5e-140 | +1.73 | 12:109564328:C:T |
| Heart Left Ventricle | sqtl | 2.4e-135 | +1.75 | 12:109561263:G:A |
| Breast Mammary Tissue | sqtl | 6.3e-126 | +1.74 | 12:109581533:C:T |
| Lung | sqtl | 1.4e-116 | -1.78 | 12:109562943:G:A |
| Esophagus Gastroesophageal Junction | sqtl | 1.2e-115 | +1.75 | 12:109561263:G:A |
| Testis | sqtl | 1.4e-113 | +1.78 | 12:109560042:C:T |
| Stomach | sqtl | 4.4e-110 | -1.79 | 12:109561263:G:A |
| Colon Sigmoid | sqtl | 1.0e-107 | +1.68 | 12:109560042:C:T |
FANTOM5 promoters
1 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 133194 | 25.4007 | 1802 |
Top tissues by expression
showing 100 of 247 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 97.41 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.11 | gold quality |
| right adrenal gland | UBERON:0001233 | 96.82 | gold quality |
| left adrenal gland | UBERON:0001234 | 96.06 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 95.99 | gold quality |
| adrenal tissue | UBERON:0018303 | 95.21 | gold quality |
| adrenal gland | UBERON:0002369 | 95.05 | gold quality |
| adrenal cortex | UBERON:0001235 | 94.83 | gold quality |
| apex of heart | UBERON:0002098 | 94.71 | gold quality |
| liver | UBERON:0002107 | 94.57 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.45 | gold quality |
| pancreatic ductal cell | CL:0002079 | 94.26 | silver quality |
| mucosa of transverse colon | UBERON:0004991 | 94.25 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 93.04 | gold quality |
| esophagus mucosa | UBERON:0002469 | 92.87 | gold quality |
| right atrium auricular region | UBERON:0006631 | 92.56 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 92.42 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 92.25 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 92.22 | gold quality |
| heart left ventricle | UBERON:0002084 | 92.18 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 92.13 | gold quality |
| spinal cord | UBERON:0002240 | 92.10 | gold quality |
| body of pancreas | UBERON:0001150 | 92.05 | gold quality |
| cardiac atrium | UBERON:0002081 | 91.77 | gold quality |
| cardiac ventricle | UBERON:0002082 | 91.71 | gold quality |
| endothelial cell | CL:0000115 | 91.60 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.53 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 91.45 | gold quality |
| ventricular zone | UBERON:0003053 | 91.45 | gold quality |
| thyroid gland | UBERON:0002046 | 91.32 | gold quality |
| buccal mucosa cell | CL:0002336 | 91.30 | gold quality |
| muscle of leg | UBERON:0001383 | 91.12 | gold quality |
| gastrocnemius | UBERON:0001388 | 91.04 | gold quality |
| prefrontal cortex | UBERON:0000451 | 90.97 | gold quality |
| heart | UBERON:0000948 | 90.92 | gold quality |
| right ovary | UBERON:0002118 | 90.90 | gold quality |
| left ovary | UBERON:0002119 | 90.82 | gold quality |
| body of stomach | UBERON:0001161 | 90.75 | gold quality |
| esophagus | UBERON:0001043 | 90.74 | gold quality |
| right uterine tube | UBERON:0001302 | 90.64 | gold quality |
| metanephros cortex | UBERON:0010533 | 90.44 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 90.14 | gold quality |
| hypothalamus | UBERON:0001898 | 90.10 | gold quality |
| minor salivary gland | UBERON:0001830 | 90.07 | gold quality |
| pituitary gland | UBERON:0000007 | 89.97 | gold quality |
| transverse colon | UBERON:0001157 | 89.83 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 89.78 | gold quality |
| skin of abdomen | UBERON:0001416 | 89.67 | gold quality |
| left coronary artery | UBERON:0001626 | 89.50 | gold quality |
| pancreas | UBERON:0001264 | 89.49 | gold quality |
| amygdala | UBERON:0001876 | 89.42 | gold quality |
| tibial nerve | UBERON:0001323 | 89.34 | gold quality |
| right frontal lobe | UBERON:0002810 | 89.29 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.09 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 89.09 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 89.07 | gold quality |
| right lung | UBERON:0002167 | 89.00 | gold quality |
| kidney epithelium | UBERON:0004819 | 89.00 | silver quality |
| upper lobe of lung | UBERON:0008948 | 88.99 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 88.99 | gold quality |
| lower esophagus | UBERON:0013473 | 88.79 | gold quality |
| prostate gland | UBERON:0002367 | 88.75 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 88.74 | gold quality |
| omental fat pad | UBERON:0010414 | 88.72 | gold quality |
| mouth mucosa | UBERON:0003729 | 88.68 | gold quality |
| peritoneum | UBERON:0002358 | 88.67 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 88.65 | gold quality |
| skin of leg | UBERON:0001511 | 88.59 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 88.53 | gold quality |
| metanephros | UBERON:0000081 | 88.47 | gold quality |
| tibial artery | UBERON:0007610 | 88.46 | gold quality |
| popliteal artery | UBERON:0002250 | 88.44 | gold quality |
| coronary artery | UBERON:0001621 | 88.43 | gold quality |
| stomach | UBERON:0000945 | 88.29 | gold quality |
| body of uterus | UBERON:0009853 | 88.16 | gold quality |
| aorta | UBERON:0000947 | 88.11 | gold quality |
| ascending aorta | UBERON:0001496 | 87.95 | gold quality |
| thoracic aorta | UBERON:0001515 | 87.94 | gold quality |
| calcaneal tendon | UBERON:0003701 | 87.92 | gold quality |
| ectocervix | UBERON:0012249 | 87.83 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 87.83 | gold quality |
| ovary | UBERON:0000992 | 87.79 | gold quality |
| putamen | UBERON:0001874 | 87.68 | gold quality |
| small intestine | UBERON:0002108 | 87.57 | gold quality |
| zone of skin | UBERON:0000014 | 87.53 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 87.38 | gold quality |
| neocortex | UBERON:0001950 | 87.29 | gold quality |
| right coronary artery | UBERON:0001625 | 87.20 | gold quality |
| left uterine tube | UBERON:0001303 | 87.19 | gold quality |
| nucleus accumbens | UBERON:0001882 | 87.15 | gold quality |
| cortex of kidney | UBERON:0001225 | 87.09 | gold quality |
| frontal cortex | UBERON:0001870 | 87.00 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 86.98 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.92 | gold quality |
| adipose tissue | UBERON:0001013 | 86.91 | gold quality |
| substantia nigra | UBERON:0002038 | 86.85 | gold quality |
| caudate nucleus | UBERON:0001873 | 86.84 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 86.82 | gold quality |
| endocervix | UBERON:0000458 | 86.79 | gold quality |
| kidney | UBERON:0002113 | 86.79 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 80 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Liver | tissue | 44.1 | high |
| Adrenal gland | tissue | 23.4 | high |
| Pituitary gland | tissue | 20.0 | |
| Epididymis | tissue | 19.9 | high |
| Frontal cortex | tissue | 18.8 | |
| Locus coeruleus | tissue | 18.2 | |
| Choroid plexus | tissue | 18.0 | |
| Caudate putamen | tissue | 17.5 | |
| Heart muscle | tissue | 16.3 | medium |
| Pancreas | tissue | 15.6 | high |
| Tongue | tissue | 15.1 | |
| Prostate | tissue | 14.3 | high |
| Nucleus accumbens | tissue | 14.0 | |
| Vagina | tissue | 13.9 | medium |
| Salivary gland | tissue | 13.9 | high |
| Ovary | tissue | 13.4 | high |
| Skeletal muscle | tissue | 13.2 | low |
| Hippocampus | tissue | 12.8 | medium |
| Kidney | tissue | 12.4 | high |
| Duodenum | tissue | 12.2 | high |
| Postcentral gyrus | tissue | 12.1 | |
| Breast | tissue | 11.7 | high |
| Colon | tissue | 11.5 | high |
| Esophagus | tissue | 10.9 | medium |
| Stomach 1 | tissue | 9.9 | high |
| Parathyroid gland | tissue | 9.2 | high |
| Thyroid gland | tissue | 9.2 | high |
| Lung | tissue | 9.2 | high |
| Fallopian tube | tissue | 8.8 | medium |
| Spinal cord | tissue | 8.7 | |
| Small intestine | tissue | 7.9 | high |
| Corpus callosum | tissue | 7.9 | |
| Rectum | tissue | 7.4 | high |
| Retina | tissue | 6.8 | |
| Endometrium 1 | tissue | 6.8 | medium |
| Testis | tissue | 6.5 | high |
| Skin 1 | tissue | 6.4 | medium |
| Medulla oblongata | tissue | 6.4 | |
| Adipose tissue | tissue | 6.3 | not detected |
| Spleen | tissue | 6.2 | medium |
| Tonsil | tissue | 6.1 | medium |
| Appendix | tissue | 6.0 | medium |
| Pons | tissue | 5.9 | |
| Seminal vesicle | tissue | 5.9 | high |
| Lymph node | tissue | 5.8 | medium |
| Midbrain | tissue | 5.7 | |
| Gallbladder | tissue | 5.7 | medium |
| Bone marrow | tissue | 5.5 | not detected |
| Periaqueductal gray | tissue | 5.4 | |
| Thalamus | tissue | 5.3 | |
| Substantia nigra | tissue | 5.3 | |
| Smooth muscle | tissue | 5.2 | not detected |
| Hypothalamus | tissue | 5.1 | |
| Thymus | tissue | 5.1 | |
| Cervix | tissue | 4.9 | not detected |
| Superior colliculi | tissue | 4.6 | |
| Placenta | tissue | 4.6 | medium |
| Urinary bladder | tissue | 4.2 | high |
| Septum | tissue | 3.8 | |
| Olfactory bulb | tissue | 3.6 |
Brain sub-regions (HPA Brain Atlas): detected in 191; highest nTPM — Parieto-temporal junction (white matter) (25.6), Nucleus raphe obscurus (25.4), Temporal white matter (24.7), Cerebellar white matter (24.4), Ventral medullary reticular nucleus (23.4).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting MMAB by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 142 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-6835-3P | 99.93 | 70.49 | 2904 |
| HSA-MIR-12133 | 99.92 | 71.82 | 2006 |
| HSA-MIR-1271-5P | 99.91 | 71.99 | 1972 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-8062 | 99.88 | 68.43 | 995 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
Functional genomics
gnomAD constraint: pLI 0.000898, LOEUF 0.874, missense Z 0.293 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000545712 — one region, missense o/e 0.94.
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 17)
- report the identification of ATR cDNA as well as the corresponding gene; ATR expression is altered in cell lines derived from cblB methylmalonyl aciduria patients; propose that inborn errors in the ATR gene identified here result in methylmalonyl aciduria (PMID:12514191)
- Results describe two common polymorphic variants of ATP:cob(I)alamin adenosyltransferase that are found in normal individuals, and their interactions with methionine synthase reductase. (PMID:15347655)
- Mutations in methylmalonic aciduria type B protein is associated with methylmalonic acidemia (PMID:17410422)
- Long-term outcome in methylmalonic acidurias is influenced by the underlying genetic defects in MCM/MMAA/MMAB. (PMID:17597648)
- Methylmalonic acidaemia: examination of genotype and biochemical data in 32 patients belonging to mut, cblA or cblB complementation group. (PMID:17957493)
- Results functionally defined the hATR active site and tentatively implicated three amino acid residues in facilitating the reduction of cob(II)alamin to cob(I)alamin which is a prerequisite to adenosylation. (PMID:18251506)
- homozygotes for the major allele (G) at MMAB_3U3527G–>C had higher LDL-cholesterol concentrations than did carriers of the minor allele (P = 0.034). (PMID:19605566)
- Characterization of ligand-binding by MMAB provides insight into the mechanism of cobalamin adenosylation and the effect of patient mutations in the inherited disorder (PMID:19625202)
- These data suggest MMAB is the most likely gene influencing high-density lipoprotein-cholesterol levels at MMAB-MVK locus. (PMID:20159775)
- c.584G>A, c.349-1G>C, and c.290G>A mutations affect the splicing process of ATR. (PMID:20556797)
- Pathogenicity of the human truncation mutant results from its inability to sequester AdoCbl for direct transfer to methylmalonyl-CoA mutase, resulting in holoenzyme formation. (PMID:21604717)
- MMAB mutations, including one novel nonsense mutation (c.12 C>A [p.C4X]), were identified in all members of the cblB cohort. (PMID:23707710)
- These findings suggest that rs11066782 in KCTD10, rs11613718 in KCTD10 and rs11067233 in MMAB may contribute to the susceptibility of coronary heart disease by altering plasma HDL-C levels in Han Chinese. (PMID:27716295)
- MMAB might be a target and potential biomarker of hepatotoxicity in EFV-induced liver toxicity (PMID:29190729)
- analysis of how molecular chaperones interact with ATR in methylmalonic aciduria cblB type (PMID:29197662)
- A genetic epidemiological study in British adults and older adults shows a high heritability of the combined indicator of vitamin B12 status (cB12) and connects B12 status with utilization of mitochondrial substrates and energy metabolism. (PMID:31203192)
- MMAB promotes negative feedback control of cholesterol homeostasis. (PMID:34750386)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mmab | ENSDARG00000068344 |
| mus_musculus | Mmab | ENSMUSG00000029575 |
| rattus_norvegicus | Mmab | ENSRNOG00000049426 |
| caenorhabditis_elegans | WBGENE00016144 |
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1924947) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 3 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal spleen morphology | 1 |
| prolonged RR interval | 1 |
| preweaning lethality, complete penetrance | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Mycobacterium tuberculosis variant bovis AF2122/97 | P64804 | 100.0% | Diamond |
| Mycobacterium tuberculosis CDC1551 | P9WP98 | 100.0% | Diamond |
| Mycobacterium tuberculosis H37Rv | P9WP99 | 100.0% | Diamond |
| Bos taurus | Q58D49 | 85.7% | Diamond |
| Citrobacter freundii | B1VB74 | 83.0% | Diamond |
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Q8ZNR5 | 83.0% | Diamond |
| Mycobacterium leprae TN | P53523 | 81.2% | Diamond |
| Cupriavidus metallidurans CH34 | Q1LJ80 | 48.4% | Diamond |
| Bacillus subtilis subsp. subtilis str. 168 | O34899 | 47.8% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| MIR4497 | ncRNA | 100616454 |
| MVK | protein-coding | 4598 |
| TRPV4 | protein-coding | 59341 |
| FAM222A | protein-coding | 84915 |
| FAM222A-AS1 | ncRNA | 84983 |
| KCTD10 | protein-coding | 83892 |
| UBE3B | protein-coding | 89910 |
| LINC01486 | ncRNA | 101928138 |
| FOXN4 | protein-coding | 121643 |
| MYO1H | protein-coding | 283446 |
Protein
Protein identifiers
Corrinoid adenosyltransferase MMAB — Q96EY8 (reviewed: Q96EY8)
Alternative names: ATP:co(I)rrinoid adenosyltransferase MMAB, Methylmalonic aciduria type B protein
All UniProt accessions (7): A0A087X114, Q96EY8, F5H079, F5H0C1, F5H4Z7, S4R3P5, S4R3Z1
UniProt curated annotations — full annotation on UniProt →
Function. Converts cob(I)alamin to adenosylcobalamin (adenosylcob(III)alamin), a coenzyme for methylmalonyl-CoA mutase, therefore participates in the final step of the vitamin B12 conversion. Generates adenosylcobalamin (AdoCbl) and directly delivers the cofactor to MUT in a transfer that is stimulated by ATP-binding to MMAB and gated by MMAA.
Subunit / interactions. Homotrimer.
Subcellular location. Mitochondrion.
Tissue specificity. Expressed in liver and skeletal muscle.
Disease relevance. Methylmalonic aciduria, cblB type (MACB) [MIM:251110] An autosomal recessive disorder of methylmalonate and cobalamin metabolism due to defective synthesis of adenosylcobalamin. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the Cob(I)alamin adenosyltransferase family.
RefSeq proteins (1): NP_443077* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR016030 | CblAdoTrfase-like | Domain |
| IPR029499 | PduO-typ | Family |
| IPR036451 | CblAdoTrfase-like_sf | Homologous_superfamily |
Pfam: PF01923
Enzyme classification (BRENDA)
- EC 2.5.1.17 — corrinoid adenosyltransferase (BRENDA: 19 organisms, 110 substrates, 35 inhibitors, 133 Km, 193 kcat entries)
Substrate kinetics (BRENDA)
13 substrates with measured Km, best-characterized 13. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0003–1.3 | 59 |
| COB(I)ALAMIN | 0.0001–0.06 | 46 |
| COB(II)ALAMIN | 0.0078–0.134 | 7 |
| CYANOCOB(I)ALAMIN | 0.01 | 2 |
| HYDROXOCOBALAMIN | 0.003–0.004 | 2 |
| 2’-DEOXY-ATP | 0.0016 | 1 |
| COB(I)INAMIDE | 0.0001 | 1 |
| COB(II)INAMIDE | 0.0163 | 1 |
| CTP | 22 | 1 |
| DATP | 0.14 | 1 |
| GTP | 1.16 | 1 |
| ITP | 29 | 1 |
| UTP | 40 | 1 |
Catalyzed reactions (Rhea)
- cob(I)alamin-[corrinoid adenosyltransferase] + ATP = apo-[corrinoid adenosyltransferase] + adenosylcob(III)alamin + triphosphate (RHEA:56796)
UniProt features (32 total): sequence variant 8, helix 8, binding site 5, modified residue 4, turn 2, strand 2, transit peptide 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
6 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 7RUT | Structure of Human ATP:Cobalamin Adenosyltransferase R190C bound to ATP | X-RAY DIFFRACTION | 1.5 |
| 7RUU | Structure of Human ATP:Cobalamin Adenosyltransferase R190C bound to adenosylcobalamin | X-RAY DIFFRACTION | 1.85 |
| 7RUV | Structure of Human ATP:Cobalamin Adenosyltransferase E193K bound to adenosylcobalamin | X-RAY DIFFRACTION | 2.1 |
| 6D5X | Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, Adenosylcobalamin, and … | X-RAY DIFFRACTION | 2.4 |
| 2IDX | Structure of Human ATP:Cobalamin adenosyltransferase bound to ATP. | X-RAY DIFFRACTION | 2.5 |
| 6D5K | Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, and Adenosylcobalamin | X-RAY DIFFRACTION | 2.85 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96EY8-F1 | 82.39 | 0.67 |
Human Protein Atlas
Protein class: Metabolic proteins, Predicted intracellular proteins, Disease related genes, Human disease related genes, Congenital disorders of metabolism, Congenital disorders of amino acid metabolism
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): mitochondria
Antibody reliability (HPA): IH supported · IF approved
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5)
| Position | Role |
|---|---|
| 60–63 | ATP |
| 68–69 | ATP |
| 78 | ATP |
| 190–194 | ATP |
| 214 | ATP |
Post-translational modifications (4)
| Type | Positions |
|---|---|
| N6-acetyllysine | 230 |
| N6-succinyllysine | 230, 211 |
| Phosphoserine | 134 |
Function
Pathways and Gene Ontology
Reactome pathways
2 curated (TAS) of 10; 5 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
10 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-3359471 | Defective MMAB causes MMA, cblB type ⚕ | curated |
| R-HSA-9759218 | Cobalamin (Cbl) metabolism | curated |
| R-HSA-3296469 | Defects in cobalamin (B12) metabolism ⚕ | — |
| R-HSA-3296482 | Defects in vitamin and cofactor metabolism ⚕ | — |
| R-HSA-1643685 | Disease ⚕ | — |
| R-HSA-5668914 | Diseases of metabolism ⚕ | — |
| R-HSA-196741 | Cobalamin (Cbl, vitamin B12) transport and metabolism | — |
| R-HSA-1430728 | Metabolism | — |
| R-HSA-196854 | Metabolism of vitamins and cofactors | — |
| R-HSA-196849 | Metabolism of water-soluble vitamins and cofactors | — |
MSigDB gene sets: 688 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, GOBP_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELL_ACTIVATION, RNGTGGGC_UNKNOWN, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, KOBAYASHI_EGFR_SIGNALING_24HR_UP, BROWNE_HCMV_INFECTION_6HR_DN, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION, GOBP_REGULATION_OF_ERBB_SIGNALING_PATHWAY, GOBP_TOLERANCE_INDUCTION, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT
GO Biological Process (1): cobalamin metabolic process (GO:0009235)
GO Molecular Function (7): ATP binding (GO:0005524), corrinoid adenosyltransferase activity (GO:0008817), transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765), cobalamin binding (GO:0031419), nucleotide binding (GO:0000166), protein binding (GO:0005515), transferase activity (GO:0016740)
GO Cellular Component (2): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759)
Reactome top-level categories
8 top-level categories:
| Category | Pathways |
|---|---|
| Defects in cobalamin (B12) metabolism | 1 |
| Cobalamin (Cbl, vitamin B12) transport and metabolism | 1 |
| Metabolism of water-soluble vitamins and cofactors | 1 |
| Metabolism of vitamins and cofactors | 1 |
| Metabolism | 1 |
| Defects in vitamin and cofactor metabolism | 1 |
| Diseases of metabolism | 1 |
| Disease | 1 |
GO top-level categories
16 GO namespaces:
| Category | Terms |
|---|---|
| heterocyclic compound binding | 2 |
| tetrapyrrole metabolic process | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| anion binding | 1 |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 1 |
| transferase activity | 1 |
| vitamin binding | 1 |
| tetrapyrrole binding | 1 |
| nucleoside phosphate binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 5 of 10 annotations. The rest are phylogenetic / computational / electronic (IEA).
5 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| cobalamin metabolic process | BP | direct assay |
| mitochondrion | CC | high-throughput |
| cobalamin binding | MF | direct assay |
| corrinoid adenosyltransferase activity | MF | direct assay |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 1,002 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MMAB | MMAA | Q8IVH4 | 991 |
| MMAB | MMADHC | Q9H3L0 | 978 |
| MMAB | MMUT | P22033 | 971 |
| MMAB | LMBRD1 | Q9NUN5 | 968 |
| MMAB | MMACHC | Q9Y4U1 | 945 |
| MMAB | CD320 | Q9NPF0 | 852 |
| MMAB | MTR | Q99707 | 814 |
| MMAB | CBL | P22681 | 805 |
| MMAB | MTRR | Q9UBK8 | 801 |
| MMAB | MCEE | Q96PE7 | 770 |
| MMAB | PCCB | P05166 | 692 |
| MMAB | ACSF3 | Q4G176 | 634 |
| MMAB | PCCA | P05165 | 604 |
| MMAB | ABCD4 | O14678 | 601 |
| MMAB | MVK | Q03426 | 600 |
IntAct
Human interaction partners of MMAB in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
10 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| DBT | physical association | 0.620 | 2 |
| CALR | physical association | 0.560 | 3 |
| CBY2 | physical association | 0.560 | 3 |
| DLST | physical association | 0.560 | 3 |
| NEK7 | physical association | 0.560 | 3 |
| OPTN | physical association | 0.560 | 3 |
| PMPCB | association | 0.530 | 1 |
| DPYSL4 | association | 0.350 | 1 |
| RNF151 | association | 0.350 | 1 |
| TNNT1 | association | 0.350 | 1 |
BioGRID (150 interactions; top human partners by supporting records): MRRF (Affinity Capture-MS; 3 records), CLPP (Proximity Label-MS; 2 records), CS (Proximity Label-MS; 2 records), GRSF1 (Proximity Label-MS; 2 records), HSCB (Affinity Capture-MS; 2 records), ICT1 (Proximity Label-MS; 2 records), OXLD1 (Affinity Capture-MS; 2 records), PMPCA (Proximity Label-MS; 2 records), PMPCB (Proximity Label-MS; 2 records), SPERT (Two-hybrid; 2 records), TEKT2 (Affinity Capture-MS; 2 records), TRMT61B (Affinity Capture-MS; 2 records), AARS2 (Proximity Label-MS), ACAD9 (Proximity Label-MS), ACE2 (Affinity Capture-MS)
Disease & clinical
Genetic variants
Variant evidence for MMAB: 610 ClinVar records (96 pathogenic / likely pathogenic); 29 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
610 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 52 |
| Likely pathogenic | 44 |
| Uncertain significance | 175 |
| Likely benign | 222 |
| Benign | 56 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 96 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 218324 | NM_052845.4(MMAB):c.571C>T (p.Arg191Trp) | Pathogenic | criteria provided, multiple submitters, no conflicts | 14 |
| 219008 | NM_052845.4(MMAB):c.197-1G>T | Pathogenic | criteria provided, multiple submitters, no conflicts | 14 |
| 219004 | NM_052845.4(MMAB):c.291-1G>A | Pathogenic | criteria provided, multiple submitters, no conflicts | 11 |
| 203820 | NM_052845.4(MMAB):c.700C>T (p.Gln234Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 10 |
| 203819 | NM_052845.4(MMAB):c.569G>A (p.Arg190His) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 550793 | NM_052845.4(MMAB):c.12C>A (p.Cys4Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 219006 | NM_052845.4(MMAB):c.572G>A (p.Arg191Gln) | Pathogenic | criteria provided, multiple submitters, no conflicts | 6 |
| 1173993 | NM_052845.4(MMAB):c.367del (p.Asp123fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 1068489 | NM_052845.4(MMAB):c.220G>T (p.Glu74Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1174002 | NM_052845.4(MMAB):c.656_659del (p.Tyr219fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1451421 | NM_052845.4(MMAB):c.523G>T (p.Gly175Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2749351 | NM_052845.4(MMAB):c.139C>T (p.Gln47Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 445684 | NM_052845.4(MMAB):c.521C>T (p.Ser174Leu) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 218327 | NM_052845.4(MMAB):c.567CCG[3] (p.Arg191dup) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 648669 | NM_052845.4(MMAB):c.581_582del (p.Arg194fs) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
Per-variant reference — Sugi Variant
Explore MMAB’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 32 predictions of 790):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 12:109561038 | donor_loss | 1.0000 | 2 |
| 12:109561527–109561528 | acceptor_gain | 1.0000 | 2 |
| 12:109561783 | donor_gain | 1.0000 | |
| 12:109559094–109559095 | donor_loss | 0.9900 | 6 |
| 12:109561039 | donor_loss | 0.9900 | 3 |
| 12:109561105–109561106 | acceptor_loss | 0.9900 | 5 |
| 12:109561418–109561419 | donor_loss | 0.9900 | 6 |
| 12:109561518–109561519 | acceptor_loss | 0.9900 | 4 |
| 12:109561792 | donor_gain | 0.9900 | |
| 12:109559096 | donor_loss | 0.9800 | 2 |
AlphaMissense
409 missense substitutions predicted likely pathogenic (of 1,610 scored), across 119 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| D218 | 8 | 0.924 | 0.974 |
| F170 | 8 | 0.907 | 0.992 |
| D90 | 8 | 0.888 | 0.950 |
| D64 | 8 | 0.876 | 0.946 |
| N214 | 8 | 0.866 | 0.967 |
| F83 | 8 | 0.864 | 0.971 |
| F221 | 7 | 0.952 | 0.987 |
| S217 | 7 | 0.893 | 0.985 |
| E193 | 7 | 0.871 | 0.970 |
| E91 | 7 | 0.869 | 0.941 |
| E235 | 7 | 0.769 | 0.867 |
| R215 | 6 | 0.956 | 0.979 |
| K78 | 6 | 0.940 | 0.981 |
| R225 | 6 | 0.932 | 0.975 |
| R190 | 6 | 0.858 | 0.977 |
| R194 | 6 | 0.857 | 0.954 |
| G66 | 6 | 0.838 | 0.915 |
| C189 | 6 | 0.835 | 0.985 |
| E154 | 6 | 0.801 | 0.893 |
| H183 | 6 | 0.798 | 0.916 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Disease associations
OMIM: gene MIM:607568 | disease phenotypes: MIM:251110, MIM:251000, MIM:175900
GenCC curated gene-disease
1 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| methylmalonic aciduria, cblB type | Definitive | Autosomal recessive | 6 |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| methylmalonic aciduria, cblB type | Definitive | AR |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (9 panels, 9 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
9 panels:
| Panel | Rating |
|---|---|
| DDG2P | green |
| Hyperammonaemia | green |
| Hypotonic infant | green |
| Intellectual disability | green |
| Leukodystrophy, childhood onset | green |
| Likely inborn error of metabolism | green |
| Paediatric disorders | green |
| Undiagnosed metabolic disorders | green |
| Unexplained death in infancy and sudden unexplained death in childhood | green |
Mondo (3): methylmalonic aciduria, cblB type (MONDO:0009614), methylmalonic acidemia (MONDO:0002012), porokeratosis 3, disseminated superficial actinic type (MONDO:0008293)
Orphanet (2): Vitamin B12-responsive methylmalonic acidemia (Orphanet:28), Vitamin B12-responsive methylmalonic acidemia type cblB (Orphanet:79311)
HPO phenotypes
34 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001259 | Coma |
| HP:0001263 | Global developmental delay |
| HP:0001508 | Failure to thrive |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001873 | Thrombocytopenia |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001876 | Pancytopenia |
| HP:0001903 | Anemia |
| HP:0001942 | Metabolic acidosis |
| HP:0001943 | Hypoglycemia |
| HP:0001944 | Dehydration |
| HP:0001946 | Ketosis |
| HP:0001987 | Hyperammonemia |
| HP:0002013 | Vomiting |
| HP:0002098 | Respiratory distress |
| HP:0002154 | Hyperglycinemia |
| HP:0002194 | Delayed gross motor development |
| HP:0002240 | Hepatomegaly |
| HP:0002912 | Methylmalonic acidemia |
| HP:0002919 | Ketonuria |
| HP:0003145 | Decreased circulating adenosylcobalamin concentration |
| HP:0003210 | Decreased methylmalonyl-CoA mutase activity |
| HP:0003593 | Infantile onset |
| HP:0003623 | Neonatal onset |
| HP:0004341 | Abnormal vitamin B12 concentration |
| HP:0008872 | Feeding difficulties in infancy |
| HP:0011463 | Childhood onset |
| HP:0012120 | Methylmalonic aciduria |
| HP:0032988 | Persistent head lag |
| HP:0033443 | Elevated circulating propionylcarnitine concentration |
| HP:0035024 | Elevated circulating methylmalonylcarnitine concentration |
GWAS associations
29 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST010241_83 | Apolipoprotein A1 levels | 3e-29 |
| GCST009367_26 | HDL cholesterol levels x short total sleep time interaction (2df test) | 2e-20 |
| GCST010142_53 | Fish- and plant-related diet | 2e-19 |
| GCST011348_61 | High density lipoprotein cholesterol levels | 6e-18 |
| GCST010135_28 | Oily fish consumption | 7e-17 |
| GCST010140_4 | Pork consumption | 7e-17 |
| GCST009367_22 | HDL cholesterol levels x short total sleep time interaction (2df test) | 2e-16 |
| GCST009367_24 | HDL cholesterol levels x short total sleep time interaction (2df test) | 2e-16 |
| GCST90002404_516 | Red cell distribution width | 2e-15 |
| GCST000755_40 | HDL cholesterol | 7e-15 |
| GCST009367_27 | HDL cholesterol levels x short total sleep time interaction (2df test) | 5e-14 |
| GCST009368_6 | HDL cholesterol levels x long total sleep time interaction (2df test) | 2e-13 |
| GCST009367_21 | HDL cholesterol levels x short total sleep time interaction (2df test) | 4e-13 |
| GCST009367_23 | HDL cholesterol levels x short total sleep time interaction (2df test) | 4e-13 |
| GCST010142_72 | Fish- and plant-related diet | 4e-13 |
| GCST010142_60 | Fish- and plant-related diet | 5e-13 |
| GCST009367_25 | HDL cholesterol levels x short total sleep time interaction (2df test) | 3e-11 |
| GCST010134_6 | Non-oily fish consumption | 6e-11 |
| GCST010135_36 | Oily fish consumption | 6e-11 |
| GCST010140_12 | Pork consumption | 6e-11 |
| GCST000290_10 | HDL cholesterol | 1e-10 |
| GCST90002394_152 | Monocyte percentage of white cells | 7e-10 |
| GCST002899_15 | HDL cholesterol | 9e-10 |
| GCST000135_3 | HDL cholesterol | 3e-8 |
| GCST010142_93 | Fish- and plant-related diet | 4e-8 |
| GCST90013423_6 | Age-related nuclear cataracts | 2e-7 |
| GCST002498_12 | Age-related nuclear cataracts | 6e-7 |
| GCST000805_11 | HDL cholesterol | 3e-6 |
| GCST006052_4 | Polymyositis | 4e-6 |
EFO canonical traits (from GWAS)
5 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0008111 | diet measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors
2 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| C537358 | Methylmalonic acidemia *(supp.)* | |
| C536339 | Porokeratosis, disseminated superficial actinic 1 *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066327 (SINGLE PROTEIN)
PharmGKB: 1 entry (CPIC guideline: no)
Binding affinities (BindingDB)
1 measured of 1 human assays (1 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL5653589 | KD | 1440 nM |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.42 | Kd | 376.2 | nM | CHEMBL5653589 |
| 6.24 | ED50 | 574.5 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148757: Binding affinity to human MMAB incubated for 45 mins by Kinobead based pull down assay | kd | 0.3762 | uM |
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, affects cotreatment, increases expression | 6 |
| Benzo(a)pyrene | decreases expression, increases methylation | 4 |
| Aflatoxin B1 | affects expression, decreases expression, decreases methylation, increases methylation | 3 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 2 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Leflunomide | decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, decreases expression | 2 |
| afuresertib | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| dodecyldimethylamine oxide | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| butyraldehyde | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
| bisphenol B | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| MRK 003 | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | affects response to substance, increases abundance | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651799 | Binding | Binding affinity to human MMAB incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — *ChemMedChem* |
Cellosaurus cell lines
6 cell lines: 4 finite cell line, 2 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3UH | WG2147 | Finite cell line | |
| CVCL_B3UI | WG3293 | Finite cell line | |
| CVCL_B3UJ | WG3332 | Finite cell line | |
| CVCL_B3UK | WG1641 | Finite cell line | |
| CVCL_VF02 | UAMi002-A | Induced pluripotent stem cell | Female |
| CVCL_VF03 | UAMi003-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
43 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT02426775 | Phase 3 | COMPLETED | Carglumic Acid in Methylmalonic Acidemia and Propionic Acidemia |
| NCT07163364 | Phase 3 | NOT_YET_RECRUITING | A Study to Evaluate the Effects and Safety of Hydroxocobalamin in Participants With Combined Methylmalonic Academia (cblC Type) |
| NCT05139316 | Phase 3 | COMPLETED | A Study of Adeno-Associated Virus Serotype 8-Mediated Gene Transfer of Glucose-6-Phosphatase in Patients With Glycogen Storage Disease Type Ia (GSDIa) |
| NCT01341379 | Phase 2 | WITHDRAWN | Increasing Ureagenesis in Inborn Errors of Metabolism With N-Carbamylglutamate |
| NCT01597440 | Phase 2 | TERMINATED | Long-term Outcome of N-Carbamylglutamate Treatment in Propionic Acidemia and Methylmalonic Acidemia |
| NCT01599286 | Phase 2 | COMPLETED | Short-Term Outcome of N-Carbamylglutamate in the Treatment of Acute Hyperammonemia |
| NCT04732429 | Phase 2 | TERMINATED | Study of HST5040 in Subjects With Propionic or Methylmalonic Acidemia |
| NCT00442182 | Phase 2 | UNKNOWN | The Efficacy and Safety of ITF2357 in AIS |
| NCT04836494 | Phase 1 | TERMINATED | A First in Human, Dose Escalation Study to Evaluate the Safety and Tolerability of BBP-671 in Healthy Volunteers and Patients With Propionic Acidemia or Methylmalonic Acidemia |
| NCT03810690 | Phase 1/2 | WITHDRAWN | Open Label Study of mRNA-3704 in Patients With Isolated Methylmalonic Acidemia |
| NCT04581785 | Phase 1/2 | TERMINATED | Gene Therapy With hLB-001 in Pediatric Patients With Severe Methylmalonic Acidemia |
| NCT04899310 | Phase 1/2 | TERMINATED | A Study to Assess the Safety, Pharmacokinetics, and Pharmacodynamics of mRNA-3705 in Participants With Isolated Methylmalonic Acidemia |
| NCT05295433 | Phase 1/2 | RECRUITING | An Extension Study to Evaluate the Long-Term Safety and Clinical Activity of mRNA-3705 in Participants Previously Enrolled in Other Clinical Studies of mRNA-3705 |
| NCT05778877 | Phase 1/2 | WITHDRAWN | A Study to Evaluate the Safety, Tolerability, and Pharmacodynamics of SEL-302 in Pediatric Subjects With MMA |
| NCT00078078 | Not specified | RECRUITING | Clinical and Laboratory Study of Methylmalonic Acidemia |
| NCT01289158 | Not specified | UNKNOWN | Combined Malonic and Methylmalonic Aciduria (CMAMMA): Gene Identification and Outcome Study |
| NCT03484767 | Not specified | COMPLETED | The MaP Study: Mapping the Patient Journey in MMA and PA |
| NCT03655223 | Not specified | ACTIVE_NOT_RECRUITING | Early Check: Expanded Screening in Newborns |
| NCT04176523 | Not specified | RECRUITING | Understanding the Long-Term Management of Organic Acidemia Patients With CARBAGLU®: A Mixed Methods Approach |
| NCT05040178 | Not specified | RECRUITING | An Observational Study of Carbaglu® for the Treatment of MMA and PA in Adults and Pediatrics |
| NCT05330039 | Not specified | COMPLETED | Characterization of Intestinal Microbiota in Children With Inborn Errors of Metabolism (IEM) |
| NCT05438485 | Not specified | TERMINATED | Natural History Study of Patients With Methylmalonic Acidemia and Propionic Acidemia |
| NCT05506254 | Not specified | ACTIVE_NOT_RECRUITING | Long-term Follow-up Study of Patients Who Received hLB-001 Gene Therapy |
| NCT06664840 | Not specified | NOT_YET_RECRUITING | MyRareDiet A Novel Diet Tracking Tool |
| NCT07432880 | Not specified | RECRUITING | A Prospective Study of Pediatric Participants up to 16 Years of Age With Methylmalonic Acidemia (MMA) Due to Mutations in the MMUT Gene |
| NCT01568736 | Not specified | WITHDRAWN | B7 Coreceptor Molecules in Hyper IgD Syndrome Form of Mevalonate Kinase Deficiency |
| NCT06838143 | Not specified | RECRUITING | Ilaris NIS in Korea |
| NCT00260299 | Not specified | TERMINATED | Dietary Cholesterol and Defects in Cholesterol Synthesis in Mevalonate Kinase Deficiency |
| NCT05292768 | Not specified | NOT_YET_RECRUITING | Are Mast Cells Involved in Autoinflammatory Diseases |
| NCT00887939 | Not specified | COMPLETED | Pathogenesis of Physical Induced Urticarial Syndromes |
| NCT03510442 | Not specified | RECRUITING | Natural History, Genetics, and Pathophysiology of Systemic Juvenile Idiopathic Arthritis, Adult-Onset Still’s Disease, and Related Conditions |
| NCT06248957 | Not specified | RECRUITING | SYSTEMS-LEVEL ANALYSES OF IMMUNE DYSREGULATION |
| NCT03517085 | Phase 1/2 | COMPLETED | Safety and Dose-Finding Study of DTX401 (AAV8G6PC) in Adults With Glycogen Storage Disease Type Ia (GSDIa) |
| NCT04311307 | Phase 1/2 | COMPLETED | Endogenous Glucose Production in Patients With Glycogen Storage Disease Type Ia |
| NCT06735755 | Phase 1/2 | RECRUITING | A Phase 1/2, Dose-Exploration Study to Evaluate the Safety and Efficacy of BEAM-301 in Patients With Glycogen Storage Disease Type Ia (GSDIa) |
| NCT01854242 | Not specified | COMPLETED | Study of the Relationship Between Glycogen Storage Disease Type Ia and Inflammatory Bowel Disease |
| NCT02054832 | Not specified | COMPLETED | Sleep and Quality of Life in Patients With Glycogen Storage Disease on Standard Versus Modified Uncooked Cornstarch |
| NCT03970278 | Not specified | COMPLETED | Study of Long-Term Safety and Efficacy on Gene Therapy in Glycogen Storage Disease Type Ia |
| NCT04708015 | Not specified | COMPLETED | Retrospective Study of Glucose Monitoring for Glycemic Control in Patients With GSDIa |
| NCT04909346 | Not specified | TERMINATED | Adeno-Associated Virus (AAV) Antibody Study in Subjects OTC Deficiency, GSDIa, and Wilson Disease |
| NCT06636383 | Not specified | RECRUITING | Glycogen Storage Disease Type Ia (GSDIa) Disease Monitoring Program |
| NCT06843330 | Not specified | RECRUITING | Accuracy of Lactate Meter in GSDIa |
| NCT07459582 | Not specified | RECRUITING | Accuracy of Home Lactate Meter and Accu-chek Glucometer in Patients With Glycogen Storage Disease |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for MMAB across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Associated diseases: methylmalonic aciduria, cblB type
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoinflammatory syndrome, glycogen storage disease due to glucose-6-phosphatase deficiency type IA, hyperimmunoglobulinemia D with periodic fever, methylmalonic acidemia, methylmalonic aciduria, cblB type, mevalonic aciduria, polymyositis, porokeratosis 3, disseminated superficial actinic type