MMP1

gene
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Summary

MMP1 (matrix metallopeptidase 1, HGNC:7155) is a protein-coding gene on chromosome 11q22.2, encoding Interstitial collagenase (P03956). Cleaves collagens of types I, II, and III at one site in the helical domain. In precision oncology, MMP1 Overexpression is associated with resistance to Sacituzumab Govitecan in Estrogen-receptor Positive Breast Cancer (CIViC Level D).

This gene encodes a member of the peptidase M10 family of matrix metalloproteinases (MMPs). Proteins in this family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. The encoded preproprotein is proteolytically processed to generate the mature protease. This secreted protease breaks down the interstitial collagens, including types I, II, and III. The gene is part of a cluster of MMP genes on chromosome 11. Mutations in this gene are associated with chronic obstructive pulmonary disease (COPD). Alternative splicing results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed.

Source: NCBI Gene 4312 — RefSeq curated summary.

At a glance

  • GWAS associations: 2
  • Clinical variants (ClinVar): 146 total
  • Phenotypes (HPO): 58
  • Druggable target: yes — 21 molecules with ChEMBL bioactivity
  • Precision-oncology evidence (CIViC): 1 curated variant–drug association
  • MANE Select transcript: NM_002421

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:7155
Approved symbolMMP1
Namematrix metallopeptidase 1
Location11q22.2
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000196611
Ensembl biotypeprotein_coding
OMIM120353
Entrez4312

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 2 protein_coding_CDS_not_defined, 1 protein_coding, 1 retained_intron

ENST00000315274, ENST00000680179, ENST00000681445, ENST00000681643

RefSeq mRNA: 2 — MANE Select: NM_002421 NM_001145938, NM_002421

CCDS: CCDS8322

Canonical transcript exons

ENST00000315274 — 10 exons

ExonStartEnd
ENSE00000993183102795174102795291
ENSE00000993195102792605102792738
ENSE00000993197102795452102795607
ENSE00000993199102791333102791495
ENSE00000993204102790703102790806
ENSE00000993211102797256102797500
ENSE00000993213102797014102797162
ENSE00001105440102796664102796789
ENSE00001234609102797988102798160
ENSE00001234621102789919102790521

Expression profiles

Bgee: expression breadth ubiquitous, 172 present calls, max score 99.09.

FANTOM5 (CAGE): breadth broad, TPM avg 239.1385 / max 18368.5720, expressed in 879 samples.

FANTOM5 promoters (24 alternative TSS)

Promoter IDTPM avgSamples expressed
122018231.0513856
1220013.1155283
1219980.7959180
1219950.5200164
1220090.4695162
1220120.4472170
1220080.4334130
1220070.2731109
1220110.2674114
1220150.2650122

Top tissues by expression

274 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
epithelial cell of pancreasCL:000008399.09gold quality
pancreatic ductal cellCL:000207998.93gold quality
islet of LangerhansUBERON:000000698.21gold quality
cartilage tissueUBERON:000241898.20gold quality
type B pancreatic cellCL:000016997.71gold quality
synovial membrane of synovial jointUBERON:000201897.06gold quality
gall bladderUBERON:000211094.66gold quality
stromal cell of endometriumCL:000225590.21gold quality
amniotic fluidUBERON:000017385.31gold quality
pylorusUBERON:000116683.59gold quality
deciduaUBERON:000245083.35gold quality
mucosa of urinary bladderUBERON:000125981.56gold quality
duodenumUBERON:000211481.39gold quality
jejunal mucosaUBERON:000039979.93gold quality
palpebral conjunctivaUBERON:000181278.93gold quality
vermiform appendixUBERON:000115478.27gold quality
rectumUBERON:000105276.63gold quality
body of stomachUBERON:000116175.96gold quality
caecumUBERON:000115375.86gold quality
mucosa of sigmoid colonUBERON:000499375.50gold quality
visceral pleuraUBERON:000240174.84gold quality
periodontal ligamentUBERON:000826674.37silver quality
stomachUBERON:000094572.88gold quality
nasal cavity epitheliumUBERON:000538472.01gold quality
olfactory segment of nasal mucosaUBERON:000538671.10gold quality
colonic mucosaUBERON:000031770.80gold quality
colonic epitheliumUBERON:000039769.98gold quality
placentaUBERON:000198768.08gold quality
pancreasUBERON:000126468.00gold quality
jejunumUBERON:000211567.73gold quality

Single-cell (SCXA)

Detected in 4 experiment(s), a significant marker in 4.

ExperimentMarker?Max mean expression
E-CURD-10yes2840.46
E-MTAB-6308yes953.77
E-MTAB-5061yes5.93
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AHR, AP1, AR, ATF2, ATF3, BACH1, BATF3, BCL3, CEBPA, CEBPB, CEBPG, CITED2, COP1, CREB1, CTNNB1, EGR1, EHF, ELF2, ERG, ESR1, ESR2, ETS1, ETS2, ETV1, ETV2, ETV3, ETV4, ETV7, EWSR1, FBN1, FLI1, FOS, FOSL1, FOXN1, FOXO1, FOXO3, GATA3, HIF1A, HOPX, HR

miRNA regulators (miRDB)

38 targeting MMP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-520G-5P99.9966.76658
HSA-MIR-450099.9972.722367
HSA-LET-7F-5P99.9872.561784
HSA-MIR-480399.9871.993117
HSA-MIR-6888-3P99.9765.951170
HSA-LET-7D-5P99.9671.761632
HSA-MIR-445899.9671.641650
HSA-MIR-7162-3P99.8968.161682
HSA-MIR-612499.8769.783551
HSA-MIR-202-3P99.8471.411290
HSA-MIR-5010-3P99.8370.602357
HSA-MIR-4799-5P99.8270.602663
HSA-MIR-875-3P99.6369.472548
HSA-MIR-4743-3P99.6268.122095
HSA-MIR-488-3P99.6168.791731
HSA-MIR-6833-5P99.5068.931161
HSA-MIR-425199.4069.193363
HSA-MIR-317699.2564.35954
HSA-MIR-3922-3P99.2564.961136
HSA-MIR-519099.1567.761234
HSA-MIR-3152-3P99.1066.35678
HSA-MIR-93698.8770.511124
HSA-MIR-655-5P98.7465.93888
HSA-MIR-330-5P98.7367.631788
HSA-MIR-5197-3P98.7167.051905
HSA-MIR-509498.6367.111062
HSA-MIR-518C-5P98.5369.201640
HSA-MIR-3136-5P98.5367.68793
HSA-MIR-443998.5367.53793
HSA-MIR-32698.2566.441565

Literature-anchored findings (GeneRIF, showing 40)

  • Patients with detectable concentrations of urinary MMP-1 had higher rates of disease progression and death from bladder cancer than patients with undetectable urinary MMP-1. (PMID:11705862)
  • members of the forkhead family of transcription factors play a role in regulation of the collagenase promoter and increased activity of forkhead transcription factors underlie the increase in collagenase expression observed during replicative senescence (PMID:11751876)
  • 17beta-estradiol represses MMP-1 synthesis, and this effect may contribute to its action on the inhibition of bone resorption (PMID:11762702)
  • role in degradation of extracellular matrix and joint destruction (PMID:11831026)
  • induction in fibroblasts by basic calcium phosphate crystals (PMID:11836255)
  • These data suggest that polymorphisms in the MMP1 and MMP12 genes, but not MMP9, are either causative factors in smoking-related lung injury or are in linkage disequilibrium with causative polymorphisms (PMID:11875051)
  • Membrane type 1 matrix metalloproteinase regulates cellular invasiveness and survival in cutaneous epidermal cells. (PMID:11918701)
  • in the late healing period of radiation-impaired wounds, increased expression of MMP1 may be related to overdegradation of matrixes and difficulty in granulation tissue formation (PMID:11934016)
  • A newly identified single nucleotide polymorphism at position -519 in the promoter region of the MMP-1 gene is reported. This polymorphism consists in a guanine to adenine substitution. A linkage between polymorphisms -519A/G and -1607 1G/2G was studied. (PMID:12005449)
  • Reduction of cytokine-induced expression and activity of MMP-1 and MMP-13 by mechanical strain in MH7A rheumatoid synovial cells (PMID:12009332)
  • Accessory elements, flanking DNA sequence, and promoter context play key roles in determining the efficacy of insulin and phorbol ester signaling through the enzyme motifs (PMID:12032154)
  • destruction of the surrounding matrix by endometriosis might be caused by various MMPs, which are mainly produced in stromal cells. (PMID:12034345)
  • Oxidized low-density and high-density lipoproteins regulate the production by activated monocytes (PMID:12050187)
  • lack of expression in Ewing sarcoma may be due to loss of accessibility of regulatory element to the specific fusion protein in vivo (PMID:12054564)
  • Activation of p38 alpha MAPK enhances its expression by mRNA stabilization (PMID:12060661)
  • Activation of protein kinase CK2 is an early step in the ultraviolet B-mediated increase in interstitial collagenase (matrix metalloproteinase-1; MMP-1) and stromelysin-1 (MMP-3) protein levels in human dermal fibroblasts. (PMID:12071839)
  • Results demonstrate that generation of the 44-kDa membrane type-1 matrix metalloproteinase (MT1-MMP) autolysis product regulates collagenolytic activity and subsequent invasive potential. (PMID:12145314)
  • keratinocyte-fibroblast interactions are mediated by multiple stimulating agents acting on specific receptors to induce signalling through different mitogen-activated protein kinase pathways leading to altered expression of key biological functions. (PMID:12177784)
  • Association of a polymorphism of the matrix metalloproteinase-1 gene with bone mineral density.Bone density for the distal radius was significantly lower in postmenopausal women with the GG/GG genotype. (PMID:12225803)
  • MMP1 may play a pivotal role in the formation of capillarylike tubular structures in a collagen-containing fibrin matrix in vitro and may be involved in angiogenesis in a fibrinous exudate in vivo. (PMID:12393408)
  • Genotyping was carried out using PCR-RFLP and direct sequencing. In the MMP-1 gene polymorphism, the frequency of the 2G/2G genotype that is associated with higher enzyme activity was significantly increased in colorectal cancer patients (PMID:12432557)
  • viral LMP1 and Zta proteins regulate the expression and activity of MMP-1; first evidence that viral proteins are capable of regulating MMP-1 and clues for the role of EBV in nasopharyngeal carcinoma progression (PMID:12517806)
  • A novel promoter element was detected in the human MMP1 gene, and the inflammation-responsive transcription factor SAF-1 was found to interact with it in osteoarthritis (PMID:12528113)
  • a polymorphism in the promoter region is associated with the severe chronic periodontitis phenotype in non-smokers (PMID:12622858)
  • expression and regulation by intestinal myofibroblasts in inflammatory bowel disease (PMID:12651627)
  • catalytic activity on the cell surface is regulated through a vacuolar H(+)-ATPase-dependent degradation process (PMID:12667140)
  • MMP-1 induces progressive adult-onset emphysema by the selective degradation of type III collagen within the alveolar wall. (PMID:12676763)
  • Gene expression for MMP-1 after UVA1 irradiation was induced in all fibroblasts, but the induction rate was greater in systemic sclerosis fibroblasts than in normal ones. (PMID:12692352)
  • MMP1 has a role in tumor invasion [review] (PMID:12706853)
  • MT1-MMP-catalyzed release of beta-amyloid precursor protein leads to reduction of the extracellular matrix-associated gelatinase A inhibitor, sAPP, thus making it feasible for gelatinase A to exert proteolytic activity only near its activator, MT1-MMP (PMID:12767235)
  • MMP-1 epitope increased interleukin 4 (IL-4) production of rheumatoid arthritis lymphocytes and decreased IL-4 production by control lymphocytes (PMID:12784383)
  • These data provide evidence that tissue factor pathway inhibitor-2 does not bind to matrix metalloproteinases-2, -9 or -1, or regulate matrix metalloproteinase-1, in the extracellular matrix. (PMID:12787920)
  • Hypoxia may be responsible for delayed wound healing by inducing an increase of MMP-1 synthesis. (PMID:12788533)
  • MMP1 is a senescence-associated gene in normal human oral keratinocytes. (PMID:12837283)
  • A single nucleotide polymorphism in the matrix metalloproteinase-1 promoter is associated with renal cell carcinoma (PMID:12845675)
  • study showed no change in metalloproteinase-1 production in response to varying estrogen levels in fibroblasts that were derived from incontinent women (PMID:12861139)
  • Patients with deteriorating heart failure have increased expression of TIMP1 and MMP1 mRNA. Correlation with pro-inflammatory cytokines suggests common pathways of regulation and potential activation by IL-6 and IL1-beta. (PMID:12873541)
  • Upregulation of mmp-1 ia assiciated with neoplasm invasiveness in Hereditary nonpolyposis colorectal cancers (PMID:12949792)
  • monocyte matrix metalloproteinase-1 and -9 are differentially regulated by interferon gamma through tumor necrosis factor-alpha and caspase 8 (PMID:12960156)
  • reported association between the matrix metalloproteinase 1 promoter polymorphism and ovarian cancer risk was not supported by our (PMID:12969782)

Cross-species orthologs

12 orthologs

OrganismSymbolGene ID
danio_rerioENSDARG00000012395
danio_rerioENSDARG00000108401
danio_rerioENSDARG00000114451
mus_musculusMmp1bENSMUSG00000041620
mus_musculusMmp1aENSMUSG00000043089
rattus_norvegicusMmp1bENSRNOG00000008881
rattus_norvegicusMmp1ENSRNOG00000032353
caenorhabditis_elegansWBGENE00010524
caenorhabditis_elegansWBGENE00012185
caenorhabditis_elegansWBGENE00012364
caenorhabditis_elegansWBGENE00016283
caenorhabditis_elegansWBGENE00194737

Paralogs (23): MMP25 (ENSG00000008516), MMP2 (ENSG00000087245), MMP11 (ENSG00000099953), MMP9 (ENSG00000100985), MMP15 (ENSG00000102996), HPX (ENSG00000110169), MMP8 (ENSG00000118113), MMP19 (ENSG00000123342), MMP24 (ENSG00000125966), MMP7 (ENSG00000137673), MMP20 (ENSG00000137674), MMP27 (ENSG00000137675), MMP13 (ENSG00000137745), MMP3 (ENSG00000149968), MMP21 (ENSG00000154485), MMP16 (ENSG00000156103), MMP14 (ENSG00000157227), MMP10 (ENSG00000166670), MMP26 (ENSG00000167346), MMP23B (ENSG00000189409), MMP17 (ENSG00000198598), MMP12 (ENSG00000262406), MMP28 (ENSG00000271447)

Protein

Protein identifiers

Interstitial collagenaseP03956 (reviewed: P03956)

Alternative names: Fibroblast collagenase, Matrix metalloproteinase-1

All UniProt accessions (1): P03956

UniProt curated annotations — full annotation on UniProt →

Function. Cleaves collagens of types I, II, and III at one site in the helical domain. Also cleaves collagens of types VII and X. In case of HIV infection, interacts and cleaves the secreted viral Tat protein, leading to a decrease in neuronal Tat’s mediated neurotoxicity.

Subunit / interactions. (Microbial infection) Interacts with HIV-1 Tat.

Subcellular location. Secreted. Extracellular space. Extracellular matrix.

Post-translational modifications. Undergoes autolytic cleavage to two major forms (22 kDa and 27 kDa). A minor form (25 kDa) is the glycosylated form of the 22 kDa form. The 27 kDa form has no activity while the 22/25 kDa form can act as activator for collagenase. Tyrosine phosphorylated in platelets by PKDCC/VLK.

Activity regulation. Can be activated without removal of the activation peptide.

Cofactor. Binds 4 Ca(2+) ions per subunit. Binds 2 Zn(2+) ions per subunit.

Domain organisation. There are two distinct domains in this protein; the catalytic N-terminal, and the C-terminal which is involved in substrate specificity and in binding TIMP (tissue inhibitor of metalloproteinases). The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.

Similarity. Belongs to the peptidase M10A family.

RefSeq proteins (2): NP_001139410, NP_002412* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000585Hemopexin-like_domDomain
IPR001818Pept_M10_metallopeptidaseDomain
IPR002477Peptidoglycan-bd-likeDomain
IPR006026Peptidase_MetalloDomain
IPR018486Hemopexin_CSConserved_site
IPR018487Hemopexin-like_repeatRepeat
IPR021158Pept_M10A_Zn_BSBinding_site
IPR021190Pept_M10AFamily
IPR024079MetalloPept_cat_dom_sfHomologous_superfamily
IPR033739M10A_MMPDomain
IPR036365PGBD-like_sfHomologous_superfamily
IPR036375Hemopexin-like_dom_sfHomologous_superfamily

Pfam: PF00045, PF00413, PF01471

Enzyme classification (BRENDA):

  • EC 3.4.24.7 — interstitial collagenase (BRENDA: 11 organisms, 121 substrates, 166 inhibitors, 52 Km, 47 kcat entries)

Substrate kinetics (BRENDA)

28 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
COLLAGEN I ALPHA-1 CHAIN0.0009–0.748
COLLAGEN I ALPHA-2 CHAIN0.0003–0.538
HUMAN TYPE I COLLAGEN0.0005–0.00114
HUMAN TYPE III COLLAGEN0.0013–0.00243
ALPHA1(I)772-786 TRIPLE-HELICAL PEPTIDE0.063–0.20762
FTHP-30.0612–0.06662
HUMAN TYPE II COLLAGEN0.001–0.00212
2,4-DINITROPHENYL-PRO-BETA-CYCLOHEXYL-ALA-GLY-CY0.0131
2,4-DINITROPHENYL-PRO-LEU-ALA-LEU-TRP-ALA-ARG-OH0.0261
ACETYL-PRO-LEU-GLY-ILE-LEU-GLY-OC2H50.00131
ACETYL-PRO-LEU-GLY-LEU-LEU-GLY-OC2H50.00121
ACETYL-PRO-LEU-GLY-SCH[CH2CH(CH3)2CO]-LEU-LEU-OC0.00391
BOVINE TYPE I COLLAGEN0.00021
GLY-PRO-GLN-GLY-ILE-ALA-GLY-GLN-GLN3.31
GLY-PRO-GLN-GLY-ILE-ALA-GLY-GLN-GLN-ARG-GLY-VAL-0.631

UniProt features (103 total): strand 31, binding site 24, helix 10, sequence conflict 7, sequence variant 6, turn 5, repeat 4, chain 3, modified residue 3, site 2, signal peptide 1, propeptide 1, short sequence motif 1, active site 1, glycosylation site 1, disulfide bond 1, mutagenesis site 1, region of interest 1

Structure

Experimental structures (PDB)

15 structures.

PDBMethodResolution (Å)
1HFCX-RAY DIFFRACTION1.5
1CGEX-RAY DIFFRACTION1.9
966CX-RAY DIFFRACTION1.9
1CGFX-RAY DIFFRACTION2.1
1SU3X-RAY DIFFRACTION2.2
2TCLX-RAY DIFFRACTION2.2
3SHIX-RAY DIFFRACTION2.2
1CGLX-RAY DIFFRACTION2.4
2J0TX-RAY DIFFRACTION2.54
2CLTX-RAY DIFFRACTION2.67
4AUOX-RAY DIFFRACTION3
1AYKSOLUTION NMR
2AYKSOLUTION NMR
3AYKSOLUTION NMR
4AYKSOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P03956-F191.290.85

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (3): 219; 143 (not glycosylated); 269–270 (cleavage; by autolysis)

Ligand- & substrate-binding residues (24): 92 (in inhibited form); 124; 158; 168; 170; 175; 176; 178; 180; 183; 190; 192

Post-translational modifications (3): 57, 274, 360

Disulfide bonds (1): 278–466

Glycosylation sites (1): 120

Mutagenesis-validated functional residues (1):

PositionPhenotype
360partial reduction of tyrosine phosphorylation in the presence of pkdcc/vlk.

Function

Pathways and Gene Ontology

Reactome pathways

13 pathways

IDPathway
R-HSA-1442490Collagen degradation
R-HSA-1474228Degradation of the extracellular matrix
R-HSA-1592389Activation of Matrix Metalloproteinases
R-HSA-210991Basigin interactions
R-HSA-381426Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-HSA-6785807Interleukin-4 and Interleukin-13 signaling
R-HSA-109582Hemostasis
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-1474244Extracellular matrix organization
R-HSA-168256Immune System
R-HSA-202733Cell surface interactions at the vascular wall
R-HSA-392499Metabolism of proteins
R-HSA-449147Signaling by Interleukins

MSigDB gene sets: 448 (showing top): MODULE_172, AHRARNT_01, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, MODULE_52, MCLACHLAN_DENTAL_CARIES_UP, YAGI_AML_WITH_INV_16_TRANSLOCATION, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_CELLULAR_RESPONSE_TO_UV, chr11q22, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS, MODULE_128, SATO_SILENCED_BY_DEACETYLATION_IN_PANCREATIC_CANCER, GNF2_PTX3, PID_REG_GR_PATHWAY

GO Biological Process (6): proteolysis (GO:0006508), extracellular matrix disassembly (GO:0022617), extracellular matrix organization (GO:0030198), collagen catabolic process (GO:0030574), positive regulation of protein-containing complex assembly (GO:0031334), cellular response to UV-A (GO:0071492)

GO Molecular Function (8): endopeptidase activity (GO:0004175), metalloendopeptidase activity (GO:0004222), serine-type endopeptidase activity (GO:0004252), peptidase activity (GO:0008233), zinc ion binding (GO:0008270), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)

GO Cellular Component (2): extracellular region (GO:0005576), extracellular matrix (GO:0031012)

Reactome top-level categories

Rollup of top-8 pathways:

CategoryPathways
Degradation of the extracellular matrix2
Extracellular matrix organization1
Cell surface interactions at the vascular wall1
Metabolism of proteins1
Signaling by Interleukins1
Immune System1
Hemostasis1
Cytokine Signaling in Immune system1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
peptidase activity2
endopeptidase activity2
protein metabolic process1
cellular component disassembly1
extracellular matrix organization1
extracellular structure organization1
external encapsulating structure organization1
catabolic process1
collagen metabolic process1
regulation of protein-containing complex assembly1
positive regulation of cellular component biogenesis1
positive regulation of cellular component organization1
protein-containing complex assembly1
cellular response to UV1
response to UV-A1
metallopeptidase activity1
serine-type peptidase activity1
hydrolase activity1
catalytic activity, acting on a protein1
transition metal ion binding1
catalytic activity1
cation binding1
cellular anatomical structure1
external encapsulating structure1

Protein interactions and networks

STRING

2902 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MMP1TIMP1P01033985
MMP1TIMP2P16035921
MMP1IL1BP01584849
MMP1F2RP25116828
MMP1PLAUP00749822
MMP1PITRM1Q5JRX3801
MMP1ELNP15502796
MMP1IL1AP01583779
MMP1EGFP01133779
MMP1FN1P02751777
MMP1CCL2P13500754
MMP1TIMP4Q99727754
MMP1ADAMTS3O15072751
MMP1COL1A1P02452739
MMP1IL6P05231732

IntAct

4 interactions, top by confidence:

ABTypeScore
MMP1SOX8psi-mi:“MI:0915”(physical association)0.370
NEK4QSOX1psi-mi:“MI:0914”(association)0.350
F2RMMP1psi-mi:“MI:2364”(proximity)0.270

BioGRID (27): F2R (Co-localization), MMP1 (Co-localization), MMP1 (Affinity Capture-MS), MMP1 (Synthetic Lethality), MMP1 (Reconstituted Complex), MMP1 (Affinity Capture-MS), MMP1 (Reconstituted Complex), BCAN (Biochemical Activity), MMP1 (Affinity Capture-Western), ITGA2 (Affinity Capture-Western), MMP1 (Affinity Capture-MS), MMP1 (Affinity Capture-MS), MMP1 (Affinity Capture-MS), MMP2 (Negative Genetic), MMP24 (Negative Genetic)

ESM2 similar proteins: A0A0C5PRQ1, A0FKN6, C9D7R2, C9D7R3, D2KBH9, D5FM34, D5FM37, K7Z9Q9, O13065, O17264, O35548, O62243, P03956, P07584, P0DJJ2, P0DM62, P31580, P31581, P42662, P42664, P50280, P51512, P55112, P55113, P55114, P91828, P98060, P98061, P98068, P98070, Q10738, Q18206, Q18439, Q20191, Q20459, Q20958, Q21178, Q21181, Q21252, Q22396

Diamond homologs: A4KX75, D0EM77, G5EBU3, O04529, O18733, O18767, O18927, O23507, O55123, O55761, O60882, O62806, O77656, P03956, P03957, P07152, P08253, P08254, P09237, P09238, P13943, P14780, P21692, P22757, P23097, P28862, P28863, P29136, P33434, P33435, P33436, P34960, P39900, P41245, P41246, P45452, P50280, P50281, P50282, P50757

SIGNOR signaling

14 interactions.

AEffectBMechanism
FBN1“up-regulates quantity by expression”MMP1“transcriptional regulation”
MMP1up-regulatesAngiogenesis
CITED2“down-regulates quantity by repression”MMP1“transcriptional regulation”
MMP1“down-regulates quantity by destabilization”COL2A1cleavage
ZMYND8“down-regulates quantity by repression”MMP1“transcriptional regulation”
MMP1“up-regulates activity”HBEGFcleavage
WNT7A“up-regulates quantity by expression”MMP1“transcriptional regulation”
ZNF384“up-regulates quantity by expression”MMP1“transcriptional regulation”
MMP1“down-regulates quantity by destabilization”COL1A1cleavage
MMP1“down-regulates quantity by destabilization”COL1A2cleavage
MMP1“down-regulates quantity by destabilization”COL3A1cleavage
MMP1up-regulatesECM_disassembly
MMP1down-regulatesECM

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

146 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance81
Likely benign17
Benign38

Top pathogenic / likely-pathogenic (0)

SpliceAI

742 predictions. Top by Δscore:

VariantEffectΔscore
11:102790697:ACTT:Adonor_loss1.0000
11:102790699:TTA:Tdonor_loss1.0000
11:102790700:TA:Tdonor_loss1.0000
11:102790701:A:ACdonor_gain1.0000
11:102790701:AC:Adonor_gain1.0000
11:102790701:ACCAT:Adonor_gain1.0000
11:102790702:C:Adonor_loss1.0000
11:102790702:C:CAdonor_gain1.0000
11:102790702:CC:Cdonor_gain1.0000
11:102790702:CCA:Cdonor_gain1.0000
11:102790702:CCAT:Cdonor_gain1.0000
11:102790702:CCATC:Cdonor_gain1.0000
11:102790802:CATAC:Cacceptor_gain1.0000
11:102790803:ATAC:Aacceptor_gain1.0000
11:102790804:TAC:Tacceptor_gain1.0000
11:102790805:AC:Aacceptor_gain1.0000
11:102790806:CC:Cacceptor_gain1.0000
11:102790807:C:CCacceptor_gain1.0000
11:102790812:C:CTacceptor_gain1.0000
11:102791328:CTTA:Cdonor_loss1.0000
11:102791329:TTACC:Tdonor_loss1.0000
11:102791330:TACCT:Tdonor_loss1.0000
11:102791331:A:ACdonor_gain1.0000
11:102791331:A:Cdonor_loss1.0000
11:102791331:ACCT:Adonor_gain1.0000
11:102791332:C:Adonor_loss1.0000
11:102791332:C:CCdonor_gain1.0000
11:102791332:CCT:Cdonor_gain1.0000
11:102791332:CCTC:Cdonor_gain1.0000
11:102791492:TTCC:Tacceptor_gain1.0000

AlphaMissense

3141 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:102796734:A:CF185L0.997
11:102796734:A:TF185L0.997
11:102796736:A:GF185L0.997
11:102796767:A:CF174L0.997
11:102796767:A:TF174L0.997
11:102796769:A:GF174L0.997
11:102797024:A:CF163L0.996
11:102797024:A:TF163L0.996
11:102797026:A:GF163L0.996
11:102797279:C:AW109C0.995
11:102797279:C:GW109C0.995
11:102796680:C:AW203C0.994
11:102796680:C:GW203C0.994
11:102795549:A:CH228Q0.993
11:102795549:A:TH228Q0.993
11:102795567:A:CH222Q0.993
11:102795567:A:TH222Q0.993
11:102797092:A:GW141R0.993
11:102797092:A:TW141R0.993
11:102795479:C:GD252H0.992
11:102795569:G:CH222D0.992
11:102795581:G:CH218D0.992
11:102796682:A:GW203R0.992
11:102796682:A:TW203R0.992
11:102795525:C:AM236I0.991
11:102795525:C:GM236I0.991
11:102795525:C:TM236I0.991
11:102795559:C:TG225E0.991
11:102795576:T:AE219D0.991
11:102795576:T:GE219D0.991

dbSNP variants (sampled 300 via entrez): RS1000350191 (11:102796292 A>C), RS1000803147 (11:102791440 G>A), RS1000986045 (11:102792025 T>C), RS1001036252 (11:102797883 A>G), RS1001267121 (11:102793484 A>G), RS1001333506 (11:102792254 T>C), RS1001371280 (11:102798928 G>A,T), RS1001424911 (11:102798643 C>G), RS1001718338 (11:102793221 G>A), RS1001927369 (11:102798742 A>G), RS1002422733 (11:102792985 A>C), RS1002987656 (11:102794722 A>G), RS1003092169 (11:102799843 G>A), RS1003175954 (11:102794452 C>A,T), RS1003777678 (11:102790498 T>C)

Disease associations

OMIM: gene MIM:120353 | disease phenotypes: MIM:178500, MIM:226600, MIM:610504

GenCC curated gene-disease

Mondo (4): interstitial lung disease 2 (MONDO:0800497), recessive dystrophic epidermolysis bullosa (MONDO:0009179), COPD, severe early onset (MONDO:0011751), preterm premature rupture of the membranes (MONDO:0012511)

Orphanet (4): Idiopathic pulmonary fibrosis (Orphanet:2032), Acute interstitial pneumonia (Orphanet:79126), Autosomal recessive generalized dystrophic epidermolysis bullosa, severe form (Orphanet:79408), Recessive dystrophic epidermolysis bullosa inversa (Orphanet:79409)

HPO phenotypes

58 total (30 of 58 shown, HPO-id order):

HPOTerm
HP:0000079Abnormality of the urinary system
HP:0000083Renal insufficiency
HP:0000099Glomerulonephritis
HP:0000160Narrow mouth
HP:0000478Abnormality of the eye
HP:0000572Visual loss
HP:0000670Carious teeth
HP:0000716Depression
HP:0000739Anxiety
HP:0000794IgA deposition in the glomerulus
HP:0000823Delayed puberty
HP:0000938Osteopenia
HP:0000939Osteoporosis
HP:0000982Palmoplantar keratoderma
HP:0001030Fragile skin
HP:0001056Milia
HP:0001057Aplasia cutis congenita
HP:0001075Atrophic scars
HP:0001371Flexion contracture
HP:0001510Growth delay
HP:0001581Recurrent skin infections
HP:0001644Dilated cardiomyopathy
HP:0001798Anonychia
HP:0001891Iron deficiency anemia
HP:0001903Anemia
HP:0001917Renal amyloidosis
HP:0001965Abnormal scalp morphology
HP:0002015Dysphagia
HP:0002020Gastroesophageal reflux
HP:0002671Basal cell carcinoma

GWAS associations

2 associations (top):

StudyTraitp-value
GCST006585_1874Blood protein levels7.000000e-107
GCST009731_49Blood protein levels in cardiovascular risk2.000000e-82

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0008193interstitial collagenase measurement

MeSH disease descriptors (1)

DescriptorNameTree numbers
C563032Preterm Premature Rupture of the Membranes (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (4): CHEMBL2095216 (PROTEIN FAMILY), CHEMBL2111422 (SELECTIVITY GROUP), CHEMBL332 (SINGLE PROTEIN), CHEMBL4523984 (SELECTIVITY GROUP)

Molecules with ChEMBL bioactivity

21 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 529,513 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1200448TILUDRONATE DISODIUM45,476
CHEMBL2PRAZOSIN431,107
CHEMBL421SULFASALAZINE473,629
CHEMBL481IRINOTECAN4159,900
CHEMBL56367NIMESULIDE425,455
CHEMBL707DOXAZOSIN424,931
CHEMBL145CAFFEIC ACID336,305
CHEMBL279785MARIMASTAT329,447
CHEMBL297453EPIGALOCATECHIN GALLATE322,804
CHEMBL50QUERCETIN374,559
CHEMBL75094PRINOMASTAT38,839
CHEMBL115653CIPEMASTAT2359
CHEMBL19611ILOMASTAT212,065
CHEMBL206815APRATASTAT2256
CHEMBL2107228SOLIMASTAT2104
CHEMBL261932TANOMASTAT21,980
CHEMBL279786BATIMASTAT221,247
CHEMBL368347(+)-SECOISOLARICIRESINOL291
CHEMBL440498CTS-10272615
CHEMBL76222REBIMASTAT2344
CHEMBL87223AMINOQUINURIDE2

Clinical evidence (CIViC)

Drug × variant × indication: 1 predictive associations from 1 curated evidence items.

VariantTherapyIndicationEffectLevelCIViC
MMP1 OverexpressionSacituzumab GovitecanEstrogen-receptor Positive Breast CancerResistanceCIViC DEID12597

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

2 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2071230MMP1, MMP100.000
rs7945189MMP1, MMP100.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — M10: Matrix metallopeptidase

Most potent curated ligand interactions (6 total), top 6:

LigandActionAffinityParameter
ilomastatInhibition9.25pIC50
batimastatInhibition9.0pIC50
cipemastatInhibition8.5pKi
marimastatInhibition8.3pIC50
apratastatInhibition7.48pIC50
CGS-27023AInhibition7.25pIC50

Binding affinities (BindingDB)

241 measured of 287 human assays (287 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
N-hydroxy-1-(2-methoxyethyl)-4-[(4-phenoxybenzene)sulfonyl]piperidine-4-carboxamide hydrochlorideKI0.1 nM
1-Cyclopropyl-N-hydroxy-4-{[4-(phenylthio)phenyl]-sulfonyl}piperidine-4-carboxamide HydrochlorideKI0.1 nM
N-hydroxy-2-methyl-2-[(4-phenoxybenzene)sulfonyl]propanamideKI0.1 nM
N-Hydroxy-4-{[4-(phenoxyphenyl]sulfonyl}-1- (2-propynyl)4-piperidinecarboxamide, MonohydrochlorideKI0.13 nM
N-hydroxy-4-{[4-(phenylsulfanyl)benzene]sulfonyl}-1-(prop-2-en-1-yl)piperidine-4-carboxamide hydrochlorideKI0.15 nM
piperidinyl glycine derivative, 24fKI0.19 nM
tert-Butyl 4-[(Hydroxyamino)carbonyl]-4-{[(4-phenoxyphenyl)sulfonyl]methyl}piperidine-1-carboxylateKI0.2 nM
N-hydroxy-1-[(3-methoxyphenyl)methyl]-4-{[(4-phenoxybenzene)sulfonyl]methyl}piperidine-4-carboxamide hydrochlorideKI0.2 nM
tert-butyl 4-(hydroxycarbamoyl)-4-[(4-phenoxybenzene)sulfonyl]piperidine-1-carboxylateKI0.2 nM
1-cyclopropyl-N-hydroxy-4-[(4-phenoxybenzene)sulfonyl]piperidine-4-carboxamide hydrochlorideKI0.2 nM
N-hydroxy-4-[(4-phenoxybenzene)sulfonyl]piperidine-4-carboxamideKI0.22 nM
N-hydroxy-4-{[(4-phenoxybenzene)sulfonyl]methyl}-1-(prop-2-yn-1-yl)piperidine-4-carboxamide hydrochlorideKI0.25 nM
N-Hydroxy-4-{[(4-phenoxyphenyl)sulfonyl]methyl}-1-(2-phenylethyl)piperidine-4-carboxamide HydrochlorideKI0.3 nM
N-hydroxy-1-methanesulfonyl-4-[(4-phenoxybenzene)sulfonyl]piperidine-4-carboxamideKI0.3 nM
N-hydroxy-1-(2-methoxyethyl)-4-{[4-(phenylsulfanyl)benzene]sulfonyl}piperidine-4-carboxamide hydrochlorideKI0.3 nM
BOC-piperidinyl glycine derivative, 9IC500.3 nM
N-hydroxy-4-{[4-(phenylsulfanyl)benzene]sulfonyl}-1-(prop-2-yn-1-yl)piperidine-4-carboxamide hydrochlorideKI0.33 nM
(3R)-N-hydroxy-2-{[4-(4-methoxyphenyl)phenyl]methyl}-1,1-dioxo-1,2-thiazinane-3-carboxamideKI0.4 nM
alpha-tetrahydropyran beta-sulfone 1BKI0.4 nM
1-acetyl-N-hydroxy-4-{[4-(phenylsulfanyl)benzene]sulfonyl}piperidine-4-carboxamideKI0.4 nM
piperidinyl glycine derivative, 24qIC500.4 nM
piperidinyl glycine derivative, 24uIC500.4 nM
N-Hydroxy-1-methyl-4-{[4-(phenylthio)phenyl]sulfonyl}-piperidine-4-carboxamide HydrochlorideKI0.5 nM
piperidinyl glycine derivative, 24tIC500.5 nM
TrocadeKI0.53 nM
piperidinyl glycine derivative, 24dIC500.6 nM
piperidinyl glycine derivative, 24pIC500.6 nM
piperidinyl glycine derivative, 24sIC500.6 nM
N-Pentafluorophenylsulfonyl-N-4-nitrobenzyl-glycine hydroxamateKI0.7 nM
N-hydroxy-2-{(4-nitrophenyl)methylsulfonamido}propanamideKI0.7 nM
piperidinyl glycine derivative, 27cIC500.7 nM
piperidinyl glycine derivative, 27dIC500.7 nM
BOC-piperidinyl glycine derivative, 22aIC500.75 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxy-3-methylbutanamideKI0.8 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxy-4-methylpentanamideKI0.8 nM
N-hydroxy-2-{(2-nitrophenyl)methylsulfonamido}propanamideKI0.8 nM
1-ethyl-N-hydroxy-4-{[4-(phenylsulfanyl)benzene]sulfonyl}piperidine-4-carboxamide hydrochlorideKI0.8 nM
piperidinyl glycine derivative, 24gIC500.8 nM
piperidinyl glycine derivative, 24oIC500.8 nM
piperidinyl glycine derivative, 25cIC500.8 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxypropanamideKI0.9 nM
4-({[4-(3,4-Dimethylphenoxy)phenyl]sulfonyl}methyl)-N-hydroxy-1-prop-2-ynylpiperidine-4-carboxamide HydrochlorideKI0.9 nM
piperidinyl glycine derivative, 24iIC500.9 nM
piperidinyl glycine derivative, 24rIC500.9 nM
piperidinyl glycine derivative, 26dIC500.9 nM
(3R)-N-hydroxy-1,1-dioxo-2-{[4-(pyridin-4-yl)phenyl]methyl}-1,2-thiazinane-3-carboxamideKI1 nM
piperidinyl glycine derivative, 24nIC501 nM
(R)-N4-Hydroxy-N1-[(S)-2-(1H-indol-3-yl)-1-methylcarbamoyl-ethyl]-2-isobutyl-succinamideIC501 nMUS-9487462: Inhibitors of matrix metalloproteinases
piperidinyl glycine derivative, 27bIC501.2 nM
piperidinyl glycine derivative, 24aIC501.3 nM

ChEMBL bioactivities

2751 potent at pChembl≥5 of 3190 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.00Ki0.1nMCHEMBL281795
10.00EC500.1nMCHEMBL526566
9.70IC500.2nMILOMASTAT
9.59IC500.26nMCHEMBL321180
9.52Ki0.3nMCIPEMASTAT
9.52IC500.3nMCHEMBL279078
9.40IC500.4nMCHEMBL4088630
9.40Ki0.4nMILOMASTAT
9.40IC500.4nMILOMASTAT
9.40IC500.4nMBATIMASTAT
9.40IC500.4nMCHEMBL141080
9.30Ki0.5nMBATIMASTAT
9.30IC500.5nMILOMASTAT
9.30IC500.5nMCHEMBL74670
9.30IC500.5nMCHEMBL139886
9.25IC500.56nMILOMASTAT
9.22Ki0.6nMCHEMBL353382
9.22Ki0.6nMCHEMBL433314
9.15Ki0.7nMCHEMBL382705
9.15Ki0.7nMCHEMBL208181
9.15Ki0.7nMMARIMASTAT
9.15IC500.7nMCHEMBL140511
9.12IC500.75nMBATIMASTAT
9.11IC500.78nMMARIMASTAT
9.10IC500.8nMCHEMBL140970
9.10EC500.8nMCHEMBL526106
9.06IC500.88nMCHEMBL144611
9.06Ki0.87nMCHEMBL417537
9.01Ki0.97nMCHEMBL172885
9.00Ki1nMCHEMBL30980
9.00IC500.99nMBATIMASTAT
9.00IC501nMCHEMBL207776
9.00Ki1nMCHEMBL72511
9.00Ki1nMCHEMBL324947
9.00Ki1nMCHEMBL114458
9.00Ki1nMCHEMBL389020
9.00IC501nMMARIMASTAT
9.00IC501nMCHEMBL73763
9.00IC501nMCHEMBL344633
9.00IC501nMCHEMBL337594
8.96IC501.1nMCHEMBL144843
8.96IC501.1nMCHEMBL432991
8.96IC501.1nMCHEMBL4785595
8.96Ki1.1nMCHEMBL72511
8.96Ki1.1nMMARIMASTAT
8.96IC501.1nMMARIMASTAT
8.92IC501.2nMCHEMBL344759
8.92Ki1.2nMCHEMBL45631
8.92IC501.2nMCHEMBL6572
8.92IC501.2nMBATIMASTAT

PubChem BioAssay actives

2553 with measured affinity, of 5328 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
N,6-dihydroxy-2-(4-nitrophenyl)sulfonyl-3,4-dihydro-1H-isoquinoline-1-carboxamide731524: Inhibition of MMP1 (unknown origin)ic50<0.0001uM
[(8S,9R,10S,11S,13S,14S,16S,17R)-9-fluoro-11-hydroxy-17-(2-hydroxyacetyl)-10,13,16-trimethyl-3-oxo-6,7,8,11,12,14,15,16-octahydrocyclopenta[a]phenanthren-17-yl] N-(2,2-dimethylpropyl)carbamate362585: Inhibition of glucocorticoid-mediated human MMP1 expression in PMA stimulated A549 cells assessed as MMP1 protein level by ELISAec500.0001uM
(2R)-N’-hydroxy-N-[(2S)-3-(1H-indol-3-yl)-1-(methylamino)-1-oxopropan-2-yl]-2-(2-methylpropyl)butanediamide628300: Inhibition of MMP1ic500.0002uM
(2S,3R)-N-hydroxy-2-methyl-N’-[(2S)-1-(methylamino)-1-oxo-3-(5,6,7,8-tetrahydronaphthalen-1-yl)propan-2-yl]-3-(2-methylpropyl)butanediamide108731: Activity against Matrix metalloprotease-1 (MMP-1).ic500.0003uM
(2S,3R)-N,2-dihydroxy-N’-[(2S)-1-(1H-indol-3-yl)-3,3-dimethyl-1-oxobutan-2-yl]-3-(2-methylpropyl)butanediamide104923: In vitro inhibitory activity against matrix metalloprotease 1 isolated from the culture medium of human skin fibroblasts induced with PMAic500.0003uM
(2R,3R)-3-(cyclopentylmethyl)-N-hydroxy-4-oxo-4-piperidin-1-yl-2-[(3,4,4-trimethyl-2,5-dioxoimidazolidin-1-yl)methyl]butanamide264663: Binding affinity to recombinant MMP1ki0.0003uM
(3S)-N-hydroxy-4-(4-methoxyphenyl)sulfonyl-2,2-dimethylthiomorpholine-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0004uM
N-hydroxy-4-(4-methoxyphenyl)sulfonyl-2,2-dimethylthiomorpholine-3-carboxamide1454754: Inhibition of human interstitial recombinant N-terminal MMP1 expressed in Escherichia coli BL21(DE3) using Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 as substrate after 20 to 30 mins by spectrofluorimetric analysisic500.0004uM
(2S,3R)-N-hydroxy-N’-[(2S)-1-(methylamino)-1-oxo-3-phenylpropan-2-yl]-3-(2-methylpropyl)-2-(thiophen-2-ylsulfanylmethyl)butanediamide108731: Activity against Matrix metalloprotease-1 (MMP-1).ic500.0004uM
(3S)-4-(4-bromo-2-methylphenyl)sulfonyl-N-hydroxy-2,2-dimethyl-1,4-thiazepane-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0005uM
(2R,3R)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-3-(hydroxymethyl)-2-(2-methylpropyl)butanediamide109221: Inhibitory potency against Matrix metalloprotease-1 (MMP-1)ki0.0006uM
(2R,3R)-N,2-dihydroxy-N’-[(2S)-3-(4-methoxyphenyl)-1-(methylamino)-1-oxopropan-2-yl]-2-methyl-3-(2-methylpropyl)butanediamide104557: Binding affinity was evaluated against matrix metalloprotease-1ki0.0006uM
(3S)-4-(4-bromophenyl)sulfonyl-N-hydroxy-2,2-dimethyl-1,4-thiazepane-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0007uM
(2S)-1-[(2S,3S)-2-(4-chlorophenyl)-3-(hydroxycarbamoyl)pentanoyl]-N-methylpiperidine-2-carboxamide264663: Binding affinity to recombinant MMP1ki0.0007uM
(2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’,3-dihydroxy-2-(2-methylpropyl)butanediamide109221: Inhibitory potency against Matrix metalloprotease-1 (MMP-1)ki0.0007uM
(2S,3R)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-2-(4-methoxyphenyl)-3-[(3,4,4-trimethyl-2,5-dioxoimidazolidin-1-yl)methyl]butanediamide264663: Binding affinity to recombinant MMP1ki0.0007uM
[(8S,9R,10S,11S,13S,14S,16S,17R)-9-fluoro-11-hydroxy-17-(2-hydroxyacetyl)-10,13,16-trimethyl-3-oxo-6,7,8,11,12,14,15,16-octahydrocyclopenta[a]phenanthren-17-yl] N-butan-2-ylcarbamate362585: Inhibition of glucocorticoid-mediated human MMP1 expression in PMA stimulated A549 cells assessed as MMP1 protein level by ELISAec500.0008uM
(3S)-N-hydroxy-4-(4-methoxyphenyl)sulfonyl-2,2-dimethyl-1,4-thiazepane-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0008uM
(2S,3R)-N-hydroxy-N’-[(2R)-3-(4-methoxyphenyl)-1-(methylamino)-1-oxopropan-2-yl]-2-methyl-3-(2-methylpropyl)butanediamide109228: Inhibition of MMP-1 (Matrix metalloprotease-1)ki0.0009uM
(2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-3-[(1-methyl-2-oxoquinolin-6-yl)methoxy]-2-(2-methylpropyl)butanediamide108749: Inhibitory activity against MMP-1 (Matrix metalloprotease-1)ic500.0009uM
(2R)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-2-[4-(4-methoxyphenoxy)butyl]butanediamide52368: Inhibitory potency against human fibroblast collagenase, MMP-1ki0.0010uM
(2S,11S,12R)-11-N-hydroxy-2-N-methyl-7-(1-methylimidazol-4-yl)sulfonyl-12-(2-methylpropyl)-13-oxo-1,7-diazacyclotridecane-2,11-dicarboxamide104564: Inhibition of MMP-1 (human fibroblast collagenase)ki0.0010uM
(3R)-6-cyclohexyl-N-hydroxy-3-[3-(methanesulfonamidomethyl)-1,2,4-oxadiazol-5-yl]hexanamide349373: Inhibition of MMP1ki0.0010uM
(6S)-N-hydroxy-7-(4-methoxyphenyl)sulfonyl-5,5-dimethyl-1,4,7-oxathiazonane-6-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0010uM
(3S)-N-hydroxy-2,2-dimethyl-4-(5-pyridin-2-ylthiophen-2-yl)sulfonyl-1,4-thiazepane-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0010uM
(8S,11R,12S)-12-N-hydroxy-8-N-methyl-11-(2-methylpropyl)-2,10-dioxo-1-oxa-3,9-diazacyclopentadecane-8,12-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0010uM
(2S,11S,12R)-11-N-hydroxy-2-N-methyl-12-(2-methylpropyl)-13-oxo-1,7-diazacyclotridecane-2,11-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0010uM
tert-butyl (6S,9R,10S)-10-(hydroxycarbamoyl)-6-(methylcarbamoyl)-9-(2-methylpropyl)-8-oxo-1,7-diazacyclotridecane-1-carboxylate104564: Inhibition of MMP-1 (human fibroblast collagenase)ki0.0010uM
(7S,8R,11S)-7-N-hydroxy-11-N-methyl-8-(2-methylpropyl)-9-oxo-6-oxa-1,10-diazatricyclo[11.6.1.014,19]icosa-13(20),14,16,18-tetraene-7,11-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0010uM
(4R,7R,8S)-8-N-hydroxy-4-N-methyl-7-(2-methylpropyl)-6,11-dioxo-9-oxa-2-thia-5,12-diazabicyclo[11.4.0]heptadeca-1(17),13,15-triene-4,8-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0010uM
(2S,11S,12R)-7-(benzenesulfonyl)-11-N-hydroxy-2-N-methyl-12-(2-methylpropyl)-13-oxo-1,7-diazacyclotridecane-2,11-dicarboxamide104564: Inhibition of MMP-1 (human fibroblast collagenase)ki0.0010uM
(9S,12R,13S)-13-N-hydroxy-9-N,4-dimethyl-12-(2-methylpropyl)-3,11-dioxo-1-oxa-4,10-diazacyclotridecane-9,13-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0010uM
(8S,11R,12S)-12-N-hydroxy-8-N,3-dimethyl-11-(2-methylpropyl)-2,10-dioxo-1-oxa-3,9-diazacyclopentadecane-8,12-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0010uM
(2R)-N’-hydroxy-N-[(2S)-3-(4-methoxyphenyl)-1-(methylamino)-1-oxopropan-2-yl]-2-(2-methylpropyl)butanediamide108923: Inhibition of matrix metalloprotease-1ki0.0010uM
(3S)-N-hydroxy-2,2-dimethyl-4-(4-prop-2-ynoxyphenyl)sulfonylthiomorpholine-3-carboxamide261911: Inhibition of MMP1ic500.0010uM
(3S)-N-hydroxy-6-(methoxymethoxy)-4-(4-methoxyphenyl)sulfonyl-2,2-dimethyl-1,4-thiazepane-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0010uM
2-[ethoxy-(4-fluorophenyl)phosphoryl]-N-hydroxy-3,4-dihydro-1H-isoquinoline-3-carboxamide108920: Inhibitory activity against matrix metalloprotease-1 (MMP-1)(recombinant human collagenase-1).ki0.0010uM
(2S,11S,12R)-7-(4-aminophenyl)sulfonyl-11-N-hydroxy-2-N-methyl-12-(2-methylpropyl)-13-oxo-1,7-diazacyclotridecane-2,11-dicarboxamide104564: Inhibition of MMP-1 (human fibroblast collagenase)ki0.0010uM
(2S,11S,12R)-11-N-hydroxy-2-N-methyl-12-(2-methylpropyl)-13-oxo-1,7-diazacyclotridecane-2,11-dicarboxamide;hydrochloride104564: Inhibition of MMP-1 (human fibroblast collagenase)ki0.0010uM
(2S,3R)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-3-(hydroxymethyl)-2-(4-methoxyphenyl)butanediamide264663: Binding affinity to recombinant MMP1ki0.0010uM
(2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-2-(2-methylpropyl)-3-(quinolin-8-ylsulfonylamino)butanediamide108749: Inhibitory activity against MMP-1 (Matrix metalloprotease-1)ic500.0011uM
(2S,3R)-N-hydroxy-N’-[(2S)-1-(1H-indol-3-yl)-1-oxo-3-phenylpropan-2-yl]-3-(2-methylpropyl)-2-prop-2-enylbutanediamide104923: In vitro inhibitory activity against matrix metalloprotease 1 isolated from the culture medium of human skin fibroblasts induced with PMAic500.0011uM
(2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-2-(2-methylpropyl)-3-prop-2-enylbutanediamide1727020: Inhibition of PMA-induced human skin fibroblast derived MMP1 by fluorometric assayic500.0011uM
(3R,9aS)-N-hydroxy-2-(4-methoxyphenyl)sulfonyl-5-oxo-3,4,7,8,9,9a-hexahydro-1H-pyrrolo[1,2-a][1,4]diazepine-3-carboxamide108752: Inhibition of human Matrix metalloprotease-1ic500.0012uM
(2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-2-(2-methylpropyl)-3-(quinolin-6-ylsulfonylamino)butanediamide108749: Inhibitory activity against MMP-1 (Matrix metalloprotease-1)ic500.0012uM
(3S)-4-(4-bromophenyl)sulfonyl-N-hydroxy-2,2-dimethyl-1,1-dioxo-1,4-thiazepane-3-carboxamide108733: In vitro inhibitory activity against truncated collagenase-1 (matrix metalloprotease-1).ic500.0012uM
(6S,7R,10S)-6-N-hydroxy-10-N-methyl-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-6,10-dicarboxamide108935: In vitro inhibition of human MMP-1.ki0.0012uM
(2S,3R)-N-hydroxy-N’-[(2S)-1-(1H-indol-3-yl)-3,3-dimethyl-1-oxobutan-2-yl]-3-(2-methylpropyl)-2-prop-2-enylbutanediamide104923: In vitro inhibitory activity against matrix metalloprotease 1 isolated from the culture medium of human skin fibroblasts induced with PMAic500.0012uM
(2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’-hydroxy-2-(2-methylpropyl)-3-[(4-oxo-3H-quinazolin-6-yl)sulfonylamino]butanediamide108749: Inhibitory activity against MMP-1 (Matrix metalloprotease-1)ic500.0013uM
(2S,3R)-N-hydroxy-2-methyl-N’-[(2S)-1-(methylamino)-1-oxo-3-phenylpropan-2-yl]-3-(2-methylpropyl)butanediamide108735: Inhibition of matrix metalloprotease-1 (MMP-1)ic500.0013uM

CTD chemical–gene interactions

315 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Particulate Matteraffects response to substance, affects binding, decreases reaction, increases expression, affects reaction (+6 more)25
sodium arseniteincreases reaction, affects expression, decreases expression, affects cotreatment, increases abundance (+1 more)14
Tobacco Smoke Pollutiondecreases reaction, increases expression, affects reaction, affects expression, decreases secretion (+1 more)13
Tetrachlorodibenzodioxinaffects reaction, affects binding, decreases reaction, increases expression, increases activity (+1 more)12
2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-onedecreases activity, decreases expression, decreases reaction, increases activity, increases expression (+1 more)9
Estradioldecreases reaction, increases expression, affects cotreatment, decreases expression, affects binding (+1 more)8
Vehicle Emissionsincreases expression, increases secretion, affects reaction, increases reaction, decreases reaction (+3 more)7
Benzo(a)pyreneaffects methylation, increases expression6
Lipopolysaccharidesaffects response to substance, affects cotreatment, decreases expression, increases reaction, decreases reaction (+3 more)6
U 0126decreases reaction, increases expression, increases secretion, decreases expression, increases reaction5
(+)-JQ1 compoundaffects cotreatment, decreases expression5
Acetylcysteinedecreases reaction, increases abundance, increases activity, increases expression5
Air Pollutantsincreases abundance, increases expression, decreases expression, increases secretion, decreases reaction5
Hydrogen Peroxideaffects expression, decreases expression, decreases reaction, increases expression5
Quercetindecreases expression, decreases reaction, increases expression, increases secretion5
Silicon Dioxideincreases expression, increases reaction5
cobaltiprotoporphyrindecreases expression, increases reaction, decreases reaction, increases expression4
Resveratroldecreases reaction, increases activity, increases expression, increases secretion4
Plant Extractsincreases abundance, decreases reaction, increases expression, decreases expression4
Smokedecreases nitrosation, increases expression, increases secretion4
Tetradecanoylphorbol Acetateincreases expression, increases reaction, decreases reaction4
Cyclosporineincreases expression, decreases expression4
Cadmium Chloridedecreases expression, decreases reaction, increases expression, increases secretion4
Simvastatindecreases secretion, decreases reaction, increases expression, increases secretion, decreases expression4
2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-onedecreases reaction, increases expression, increases secretion, increases reaction3
SB 203580decreases reaction, increases activity, increases expression3
pyrazolanthronedecreases reaction, increases activity, increases expression3
2,2’,4,4’-tetrabromodiphenyl etherincreases expression, increases secretion3
Arsenic Trioxidedecreases expression, increases secretion, affects cotreatment, decreases activity, decreases secretion (+3 more)3
Dexamethasonedecreases reaction, increases expression, decreases expression, decreases secretion3

ChEMBL screening assays

588 unique, capped per target: 574 binding, 10 admet, 3 functional, 1 toxicity

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL4481593BindingInhibition of collagenase (unknown origin) at 200 uM relative to controlDeleting a Chromatin Remodeling Gene Increases the Diversity of Secondary Metabolites Produced by Colletotrichum higginsianum. — J Nat Prod
CHEMBL663111FunctionalIn vitro antagonist activity against collagenase induced gel-filtered platelet (GFP) aggregation at 50 uM; NA=InactiveDiscovery and optimization of a novel series of thrombin receptor (par-1) antagonists: potent, selective peptide mimetics based on indole and indazole templates. — J Med Chem
CHEMBL3868398ADMETInhibition of recombinant human AMPA-activated MMP1 using Cy3-PLGLK(Cy5Q)AR-NH2 as substrate measured after 40 mins by spectrofluorimetric methodDesign, synthesis, and biological activity of novel, potent, and highly selective fused pyrimidine-2-carboxamide-4-one-based matrix metalloproteinase (MMP)-13 zinc-binding inhibitors. — Bioorg Med Chem

Cellosaurus cell lines

6 cell lines: 5 cancer cell line, 1 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_AB52BHK-MMP1Spontaneously immortalized cell lineMale
CVCL_B8KLAbcam HCT 116 MMP1 KOCancer cell lineMale
CVCL_B8YXAbcam MCF-7 MMP1 KOCancer cell lineFemale
CVCL_B9MUAbcam A-549 MMP1 KOCancer cell lineMale
CVCL_E0I7Ubigene HeLa MMP1 KOCancer cell lineFemale
CVCL_F1P4HyCyte HCT 116 KO-hMMP1Cancer cell lineMale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00106821PHASE4COMPLETEDEfficacy of Tiotropium in Patients of African Descent With Chronic Obstructive Pulmonary Disease
NCT00115492PHASE4COMPLETEDAdvair® DISKUS® Versus Serevent® DISKUS® For Chronic Obstructive Pulmonary Disease Exacerbations
NCT00132860PHASE4UNKNOWNProphylactic Antibiotic Treatment of Patients With Chronic Obstructive Lung Disease (COLD)
NCT00139932PHASE4COMPLETEDTiotropium Bromide Alone vs Tiotropium Bromide and Formoterol Fumarate in Subjects With COPD (Study P04272)
NCT00144196PHASE4COMPLETED12 Week Efficacy of Tiotropium Versus Placebo in Patients With Mild COPD According to Swedish Guidelines (SPIRIMILD)
NCT00144911PHASE4COMPLETEDADVAIR® DISKUS® Inhaler (Fluticasone Propionate/Salmeterol) Versus SEREVENT® DISKUS® Inhaler (Salmeterol) For The Treatment Of Chronic Obstructive Pulmonary Disease Exacerbations. ADVAIR® DISKUS® Inhaler and SEREVENT® DISKUS® Inhaler Are Trademarks of the GSK Group of Companies.
NCT00152984PHASE4COMPLETEDEfficacy and Safety of Tiotropium in Patients With COPD and Concomitant Diagnosis of Asthma
NCT00153075PHASE4COMPLETEDFlow Rate Effect Respimat Inhaler Versus a Metered Dose Inhaler Using Berodual in Patients With Chronic Obstructive Pulmonary Disease (COPD)
NCT00181207PHASE4COMPLETEDAirway Clearance for Prevention of Chronic Obstructive Pulmonary Disease (COPD) Exacerbation
NCT00184977PHASE4COMPLETEDCOPD on Primary Care Treatment (COOPT)
NCT00239408PHASE4COMPLETEDSpiriva (Tiotropium Bromide) Assessment of FEV1 - (SAFE-Portugal).
NCT00239421PHASE4COMPLETEDA Six-week Study Comparing the Efficacy and Safety of Tiotropium Plus Formoterol to Salmeterol Plus Fluticasone in Chronic Obstructive Pulmonary Disease (COPD)
NCT00239499PHASE4COMPLETEDPilot Study Comparing Tiotropium (Spiriva) to Salmeterol (Serevent) Plus Fluticasone (Flixotide) in Chronic Obstructive Pulmonary Disease (COPD)
NCT00267917PHASE4COMPLETEDEvaluation of the Respimat Inhaler vs. a HFA MDI Using Berodual in Patients With COPD With Poor MDI Technique.
NCT00274079PHASE4COMPLETEDSPIRIVA in Ususal Care
NCT00291460PHASE4UNKNOWNInspiratory Muscle Training in Hypercapnic COPD
NCT00346749PHASE4TERMINATEDADVAIR DISKUS® (Fluticasone Propionate/Salmeterol) Inhaler Versus SEREVENT DISKUS® (Salmeterol) Inhlaer On Inflammatory Cells And Markers In Chronic Obstructive Pulmonary Disease. ADVAIR DISKUS® and SEREVENT DISKUS® Inhalers Are Trademarks of the GSK Group of Companies.
NCT00351676PHASE4COMPLETEDCapturing Outcomes of Clinical Activities Performed by a Rounding Pharmacist Practising in a Team Environment
NCT00355342PHASE4COMPLETEDBone Mineral Density Study In Patients With Chronic Obstructive Pulmonary Disease. DISKUS® Inhaler is a Trademark of the GSK Group of Companies.
NCT00358358PHASE4COMPLETEDChronic Obstructive Pulmonary Disease Endpoints Study
NCT00359788PHASE4COMPLETEDA Trial Comparing Treatment With Tiotropium Inhalation Capsules to Combivent Inhalation Aerosol in COPD Patients.
NCT00361959PHASE4COMPLETEDSERETIDE 50/500mcg Versus Tiotropium Bromide On Exacerbation Rates In Severe Chronic Obstructive Pulmonary Disease
NCT00388882PHASE4COMPLETEDTrial Comparing Treatment With Tiotropium Inhalation Capsules to Combivent® Inhalation Aerosol in COPD Patients.
NCT00394485PHASE4TERMINATEDTiotropium + Procaterol vs Tiotropium + Placebo in COPD Patients
NCT00412204PHASE4COMPLETEDStudy to Evaluate the Effects of Tiotropium Bromide on Chronic Obstructive Pulmonary Disease (COPD) During Exercise
NCT00440245PHASE4COMPLETEDBronchoprotection of Salbutamol in Asthma and Chronic Obstructive Pulmonary Disease
NCT00523991PHASE4COMPLETEDTrial Comparing Tiotropium Inhalation Capsules vs Placebo in Chronic Obstructive Pulmonary Disease (COPD).
NCT00525512PHASE4COMPLETEDTiotropium In Exercise
NCT00527826PHASE4COMPLETEDInfluence Of Salmeterol Xinafoate/Fluticasone Propionate (50/500 µg BID) On The Course Of The Disease And Exacerbation Frequency In COPD Patients Gold Stage III And IV
NCT00530842PHASE4COMPLETEDEffect of Tiotropium Plus Salmeterol vs. Fluticasone/Salmeterol on Static Lung Volumes and Exercise Endurance in COPD
NCT00563381PHASE4COMPLETEDTiotropium Once Daily 18 Mcg Versus Salmeterol Twice Daily 50 Mcg on Time to First Exacerbation in COPD Patients.
NCT00569270PHASE4COMPLETEDDynamic Hyperinflation and Tiotropium
NCT00578968PHASE4COMPLETEDCardiac Limitations in Chronic Obstructive Pulmonary Disease: Benefits of Bronchodilation
NCT00592033PHASE4COMPLETEDEffect of Oxygen in Normoxaemic COPD Patients Who Desaturate During Exercise
NCT00633217PHASE4COMPLETEDAdvair HFA For Chronic Obstructive Pulmonary Disease(COPD)
NCT00633776PHASE4WITHDRAWNPerforomist Versus Foradil Evaluated by Inspiratory Capacity and High Resolution Computed Tomography (HRCT)
NCT00667797PHASE4COMPLETEDCosts & Outcomes of Hospitalization/Treatment With Levalbuterol & Albuterol in Asthma or Chronic Obstructive Pulmonary Disease (COPD) Subjects
NCT00680056PHASE4COMPLETEDAdd-on Effects of Tiotropium Over Formoterol in Exercise Tolerance on Chronic Obstructive Pulmonary Disease Patients
NCT00680641PHASE4UNKNOWNSimvastatin in Chronic Obstructive Pulmonary Disease (COPD)
NCT00720226PHASE4COMPLETEDEfficacy of Losartan in Preventing Progression of COPD