MMP12

gene
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Also known as HME

Summary

MMP12 (matrix metallopeptidase 12, HGNC:7158) is a protein-coding gene on chromosome 11q22.2, encoding Macrophage metalloelastase (P39900). May be involved in tissue injury and remodeling.

This gene encodes a member of the peptidase M10 family of matrix metalloproteinases (MMPs). Proteins in this family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. The encoded preproprotein is proteolytically processed to generate the mature protease. This protease degrades soluble and insoluble elastin. This gene may play a role in aneurysm formation and mutations in this gene are associated with lung function and chronic obstructive pulmonary disease (COPD). This gene is part of a cluster of MMP genes on chromosome 11.

Source: NCBI Gene 4321 — RefSeq curated summary.

At a glance

  • GWAS associations: 25
  • Clinical variants (ClinVar): 39 total
  • Druggable target: yes — 7 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_002426

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:7158
Approved symbolMMP12
Namematrix metallopeptidase 12
Location11q22.2
Locus typegene with protein product
StatusApproved
AliasesHME
Ensembl geneENSG00000262406
Ensembl biotypeprotein_coding
OMIM601046
Entrez4321

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 protein_coding

ENST00000571244

RefSeq mRNA: 1 — MANE Select: NM_002426 NM_002426

CCDS: CCDS73375

Canonical transcript exons

ENST00000571244 — 10 exons

ExonStartEnd
ENSE00002632018102865776102865935
ENSE00002648271102867908102868069
ENSE00002651208102867270102867393
ENSE00002656522102872865102873112
ENSE00002657493102871594102871719
ENSE00002662753102866315102866448
ENSE00002665359102862736102863200
ENSE00002674514102871804102871952
ENSE00002679936102864146102864252
ENSE00002680179102874836102874982

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 96.81.

FANTOM5 (CAGE): breadth broad, TPM avg 3.6912 / max 681.2844, expressed in 226 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
1220293.6912226

Top tissues by expression

269 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
periodontal ligamentUBERON:000826696.81gold quality
ileal mucosaUBERON:000033194.91gold quality
mucosa of sigmoid colonUBERON:000499393.32gold quality
deciduaUBERON:000245092.20gold quality
cartilage tissueUBERON:000241892.13gold quality
vermiform appendixUBERON:000115491.98gold quality
amniotic fluidUBERON:000017389.37gold quality
colonic mucosaUBERON:000031787.60gold quality
rectumUBERON:000105285.75gold quality
caecumUBERON:000115382.66gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047380.74gold quality
epithelium of nasopharynxUBERON:000195179.37gold quality
palpebral conjunctivaUBERON:000181276.56gold quality
placentaUBERON:000198776.10gold quality
gingivaUBERON:000182874.23gold quality
gingival epitheliumUBERON:000194974.10gold quality
lymph nodeUBERON:000002972.08gold quality
colonic epitheliumUBERON:000039770.51gold quality
stromal cell of endometriumCL:000225568.42gold quality
tonsilUBERON:000237266.86gold quality
duodenumUBERON:000211464.28gold quality
pancreatic ductal cellCL:000207964.11gold quality
gall bladderUBERON:000211063.42gold quality
large intestineUBERON:000005962.22gold quality
small intestine Peyer’s patchUBERON:000345461.81gold quality
calcaneal tendonUBERON:000370161.81gold quality
intestineUBERON:000016061.75gold quality
mucosa of transverse colonUBERON:000499161.36gold quality
epithelial cell of pancreasCL:000008361.05silver quality
colonUBERON:000115561.04gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

ExperimentMarker?Max mean expression
E-ANND-3no3.88

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AP1, EGR1, FOSL1, JUN, JUND, MAFB, PPARA, PPARG, RELA, SPIC, THRA, THRB, YBX1

miRNA regulators (miRDB)

27 targeting MMP12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3924100.0072.092394
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-477599.9875.006394
HSA-MIR-60799.9773.625593
HSA-MIR-590-3P99.9674.346478
HSA-MIR-130599.9171.433443
HSA-MIR-548D-3P99.8770.674362
HSA-MIR-548BB-3P99.8670.584354
HSA-MIR-548AC99.8470.774351
HSA-MIR-548H-3P99.8470.804349
HSA-MIR-548Z99.8470.804349
HSA-MIR-5004-5P99.6866.631294
HSA-MIR-891B99.5969.811083
HSA-MIR-451B99.5568.281380
HSA-MIR-6828-5P99.3169.211433
HSA-MIR-3675-3P99.0967.70968
HSA-MIR-455-3P98.9467.68878
HSA-MIR-4477A98.8369.752952
HSA-MIR-6715B-3P98.8068.071204
HSA-MIR-299-5P98.5671.141140
HSA-MIR-63398.3569.451167
HSA-MIR-397798.0068.171500
HSA-MIR-6807-5P97.5164.251046
HSA-MIR-426496.3564.761480
HSA-MIR-4633-5P96.1766.36501

Literature-anchored findings (GeneRIF, showing 40)

  • substrate specificity based on x ray crystallography (PMID:11575928)
  • crystal structure in complex with hydroxamic acid inhibitor (PMID:11575929)
  • These data suggest that polymorphisms in the MMP1 and MMP12 genes, but not MMP9, are either causative factors in smoking-related lung injury or are in linkage disequilibrium with causative polymorphisms. (PMID:11875051)
  • The presence of MMP-12 has been demonstrated in multiple sclerosis (MS) lesions, particularly in foamy macrophages in actively demyelinating lesions, suggesting a role for MMP-12 during demyelination in MS. (PMID:12742660)
  • Migration of monocytes/macrophages in vitro and in vivo is accompanied by MMP12-dependent tunnel formation and by neovascularization. (PMID:12858542)
  • MMP-12 is expressed in and secreted by human bronchial epithelial cells (PMID:15474460)
  • abnormal production of tropoelastin and fibrillin by heat in human skin and that their degradation by various MMP, such as MMP-12, may contribute to the accumulation of elastotic material in photoaged skin. (PMID:15654955)
  • MMP-12 might be not only a prognostic marker, but also a valuable therapeutic target. (PMID:15709175)
  • Chronic obstructive pulmonary disease patients produce greater quantities of MMP-12 than controls (PMID:15723202)
  • findings provide novel evidence of a direct relationship between cigarette smoke exposure and MMP-12 in human airway epithelia and suggest several targets for modulation of this potentially pathogenic pathway (PMID:15781250)
  • By regulating the proliferation of corneal epithelial cells, Wnt-7a and MMP-12 appear to contribute to corneal wound healing (PMID:15802269)
  • NADPH oxidase restrains the MMP-12 activity of macrophages (PMID:15983040)
  • cathepsin F, matrix metalloproteinases 11 and 12 are upregulated in cervical cancer (PMID:15989693)
  • Matrix metalloproteinase 12, a proteinase that plays a critical role in mouse models, was the third most highly induced gene in smokers (ninefold, p < 0.0001). (PMID:16166618)
  • matrix metalloproteinase 1, 3 and 12 haplotypes may associated with development of lung cancer, particularly among never smokers and men (PMID:16311244)
  • Our findings indicate that human airway smooth muscle cells express and secrete MMP-12 that is up-regulated by IL-1beta and TNF-alpha. (PMID:16359550)
  • analysis of substrate specificity of matrix metalloproteinase-12 (PMID:16481329)
  • the association between the functional polymorphism of matrix metalloproteinases (MMPs) and the development of chronic obstructive pulmonary disease (COPD) (PMID:16676616)
  • Protective role for stromal MMP-12 in lung tumor growth; the use of the human/mouse protein chips allows us to distinguish tumor and host-derived proteases (PMID:16912171)
  • A new factor, MMP-12, regulates glioma invasiveness through interaction with tenascin-C. (PMID:17178873)
  • NMR structure of matrix metalloproteinase 12 (PMID:17300109)
  • High expression of MMP-12 in squamous laryngeal carcinoma was related to significant hyperplasia. (PMID:17357518)
  • MMP-12 is an important oncogene in high-stage and high-grade endometrial adenocarcinoma. (PMID:17574772)
  • Reliable and reproducible estimates of k(cat)and K(m) from only two or three progress curves were obtained using MMP12. (PMID:17706587)
  • Results describe copy number aberrations in the SDHD and MMP12 genes in an affected Solar Keratosis and control cohort. (PMID:17727250)
  • Inhibitor-binding-induced perturbations of the NMR spectra of MMP-1 and MMP-3 map to similar locations across MMP-12 and encompass the internal conformational adjustments (PMID:17997411)
  • Smoking and disease itself may stimulate MMP-12 expression in airway compartments (sputum and bronchoalveolar lavage)from chronic obstructive pulmonary disease patients. (PMID:18001475)
  • results indicate that resident alveolar macrophages and recruited neutrophils do not play a role in the delayed macrophage recruitment induced by rhMMP-12 (PMID:18001704)
  • 357Asn/Ser polymorphism not related to generalized aggressive periodontitis (PMID:18052707)
  • data suggest that MMP-2 -735C/T, MMP-9 -1562C/T and MMP-12 357Asn/Ser polymorphisms are not associated with susceptibility to severe CP in Turkish population. T allele of MMP-9 -1562 gene might be associated with decreased susceptibility to severe CP. (PMID:18155181)
  • Alveolar macrophage matrix metalloproteinase 1 and 12 may have a role in the lung structural changes leading to the development of emphysema. (PMID:18259971)
  • potential role for MMP12 -82 A/G and MMP13 -77 A/G combined polymorphisms in superficial endometriosis. As no association was found with deep infiltrating endometriosis, these polymorphisms might protect from a more in-depth penetration of tissues. (PMID:18308831)
  • Bone Marrow Stromal (BMS) cells induce MMP-12 expression in prostate cancer cells, which results in invasive cells capable of degradation of type I collagen. (PMID:18324629)
  • The amino acid preferences of the different subsites on the catalytic domain of MMP-12 were analyzed. (PMID:18334288)
  • we conclude that one mechanism, by which MMP-12 induces IL-8/CXCL8 release from the alveolar epithelium, is the EGFR/ERK1/2/activating protein-1 pathway. (PMID:18390828)
  • The expression of HME gene in gastric cancers may be related with lower possibility of metastasis and predict a better prognosis. (PMID:18396640)
  • MMP-12 may be critical to the initiation and progression of atherosclerosis via degradation of the elastic layers and/or basement membrane. (PMID:18403602)
  • NMR-derived structure of catalytic domain of MMP12 is complex with N-(dibenzo[b,d] thiophene-3-sulfonyl valine. (PMID:18425585)
  • MMP-12 catalytic domain recognizes triple helical peptide models of collagen V with exosites and high activity (PMID:18539597)
  • MMP-12 truncates and inactivates ELR+ CXC chemokines and generates CCL2, -7, -8, and -13 antagonists (PMID:18660381)

Cross-species orthologs

16 orthologs

OrganismSymbolGene ID
danio_reriommp23bbENSDARG00000009825
danio_reriommp25bENSDARG00000010556
danio_reriohpxaENSDARG00000012609
danio_reriommp30ENSDARG00000045887
danio_reriommp25aENSDARG00000077290
danio_reriommp13bENSDARG00000100794
mus_musculusMmp12ENSMUSG00000049723
rattus_norvegicusMmp12ENSRNOG00000030187
drosophila_melanogasterMmp1FBGN0035049
caenorhabditis_elegansWBGENE00006987
caenorhabditis_elegansWBGENE00010524
caenorhabditis_elegansWBGENE00012185
caenorhabditis_elegansWBGENE00012364
caenorhabditis_elegansWBGENE00016283
caenorhabditis_elegansWBGENE00020646
caenorhabditis_elegansWBGENE00194737

Paralogs (23): MMP25 (ENSG00000008516), MMP2 (ENSG00000087245), MMP11 (ENSG00000099953), MMP9 (ENSG00000100985), MMP15 (ENSG00000102996), HPX (ENSG00000110169), MMP8 (ENSG00000118113), MMP19 (ENSG00000123342), MMP24 (ENSG00000125966), MMP7 (ENSG00000137673), MMP20 (ENSG00000137674), MMP27 (ENSG00000137675), MMP13 (ENSG00000137745), MMP3 (ENSG00000149968), MMP21 (ENSG00000154485), MMP16 (ENSG00000156103), MMP14 (ENSG00000157227), MMP10 (ENSG00000166670), MMP26 (ENSG00000167346), MMP23B (ENSG00000189409), MMP1 (ENSG00000196611), MMP17 (ENSG00000198598), MMP28 (ENSG00000271447)

Protein

Protein identifiers

Macrophage metalloelastaseP39900 (reviewed: P39900)

Alternative names: Macrophage elastase, Matrix metalloproteinase-12

All UniProt accessions (1): P39900

UniProt curated annotations — full annotation on UniProt →

Function. May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1’ site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3.

Subcellular location. Secreted. Extracellular space. Extracellular matrix.

Tissue specificity. Found in alveolar macrophages but not in peripheral blood monocytes.

Cofactor. Binds 4 Ca(2+) ions per subunit. Binds 2 Zn(2+) ions per subunit.

Domain organisation. The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.

Induction. By exposure to bacterial lipopolysaccharides (LPS). Inhibited by dexamethasone.

Similarity. Belongs to the peptidase M10A family.

RefSeq proteins (1): NP_002417* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000585Hemopexin-like_domDomain
IPR001818Pept_M10_metallopeptidaseDomain
IPR002477Peptidoglycan-bd-likeDomain
IPR006026Peptidase_MetalloDomain
IPR018486Hemopexin_CSConserved_site
IPR018487Hemopexin-like_repeatRepeat
IPR021158Pept_M10A_Zn_BSBinding_site
IPR021190Pept_M10AFamily
IPR024079MetalloPept_cat_dom_sfHomologous_superfamily
IPR033739M10A_MMPDomain
IPR036365PGBD-like_sfHomologous_superfamily
IPR036375Hemopexin-like_dom_sfHomologous_superfamily

Pfam: PF00045, PF00413, PF01471

Enzyme classification (BRENDA):

  • EC 3.4.24.65 — macrophage elastase (BRENDA: 4 organisms, 95 substrates, 46 inhibitors, 48 Km, 48 kcat entries)

Substrate kinetics (BRENDA)

10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
FELN-1000.001–0.004716
MCA-PRO-LEU-GLY-LEU-DPA-ALA-ARG-NH20.113–0.24116
2-AMINOBENZOYL-PLALWRSQ-2-(2,4-DINITROPHENYL)AMI0.0202–0.02492
2-AMINOBENZOYL-PLGLEEA-2-(2,4-DINITROPHENYL)AMIN0.0047–0.00912
2-AMINOBENZOYL-RPLALEESQ-2-(2,4-DINITROPHENYL)AM0.0075–0.0292
2-AMINOBENZOYL-RPLALWEEQ-2-(2,4-DINITROPHENYL)AM0.0123–0.01462
2-AMINOBENZOYL-RPLALWESQ-2-(2,4-DINITROPHENYL)AM0.0068–0.01382
2-AMINOBENZOYL-RPLALWRSQ-2-(2,4-DINITROPHENYL)AM0.0144–0.01562
2-AMINOBENZOYL-RPLELWRSQ-2-(2,4-DINITROPHENYL)AM0.0088–0.00932
2-AMINOBENZOYL-RPLGLEEA-2-(2,4-DINITROPHENYL)AMI0.0103–0.01972

UniProt features (88 total): strand 33, binding site 25, turn 9, helix 7, repeat 4, glycosylation site 2, sequence variant 2, signal peptide 1, propeptide 1, chain 1, disulfide bond 1, short sequence motif 1, active site 1

Structure

Experimental structures (PDB)

86 structures, top 30 by resolution.

PDBMethodResolution (Å)
1Y93X-RAY DIFFRACTION1.03
1JK3X-RAY DIFFRACTION1.09
3F17X-RAY DIFFRACTION1.1
3F18X-RAY DIFFRACTION1.13
3F19X-RAY DIFFRACTION1.13
2OXWX-RAY DIFFRACTION1.15
4GQLX-RAY DIFFRACTION1.15
3F16X-RAY DIFFRACTION1.16
5D2BX-RAY DIFFRACTION1.2
6EKNX-RAY DIFFRACTION1.2
2OXUX-RAY DIFFRACTION1.24
7OVYX-RAY DIFFRACTION1.24
3F1AX-RAY DIFFRACTION1.25
4GR8X-RAY DIFFRACTION1.3
3UVCX-RAY DIFFRACTION1.3
5CXAX-RAY DIFFRACTION1.3
6EOXX-RAY DIFFRACTION1.3
5CZMX-RAY DIFFRACTION1.3
3LJGX-RAY DIFFRACTION1.31
5D3CX-RAY DIFFRACTION1.31
2HU6X-RAY DIFFRACTION1.32
1RMZX-RAY DIFFRACTION1.34
5LABX-RAY DIFFRACTION1.34
4H30X-RAY DIFFRACTION1.43
6ELAX-RAY DIFFRACTION1.49
4GR3X-RAY DIFFRACTION1.49
4GR0X-RAY DIFFRACTION1.5
4H76X-RAY DIFFRACTION1.5
3N2VX-RAY DIFFRACTION1.55
3TS4X-RAY DIFFRACTION1.59

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P39900-F187.350.69

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 219

Ligand- & substrate-binding residues (25): 124; 158; 168; 170; 175; 176; 178; 180; 183; 190; 192; 194

Disulfide bonds (1): 282–470

Glycosylation sites (2): 20, 285

Function

Pathways and Gene Ontology

Reactome pathways

3 pathways

IDPathway
R-HSA-1442490Collagen degradation
R-HSA-1474228Degradation of the extracellular matrix
R-HSA-1474244Extracellular matrix organization

MSigDB gene sets: 310 (showing top): GSE45365_NK_CELL_VS_CD8A_DC_UP, MODULE_172, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_CELLULAR_RESPONSE_TO_VIRUS, GOBP_POSITIVE_REGULATION_OF_TYPE_I_INTERFERON_PRODUCTION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_REGULATION_OF_DEFENSE_RESPONSE_TO_VIRUS, GOBP_RESPONSE_TO_PEPTIDE, chr11q22, GOBP_RESPONSE_TO_TYPE_I_INTERFERON, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_INNATE_IMMUNE_RESPONSE

GO Biological Process (20): negative regulation of transcription by RNA polymerase II (GO:0000122), proteolysis (GO:0006508), protein import into nucleus (GO:0006606), extracellular matrix disassembly (GO:0022617), extracellular matrix organization (GO:0030198), collagen catabolic process (GO:0030574), positive regulation of interferon-alpha production (GO:0032727), wound healing, spreading of epidermal cells (GO:0035313), positive regulation of transcription by RNA polymerase II (GO:0045944), lung alveolus development (GO:0048286), regulation of defense response to virus by host (GO:0050691), positive regulation of epithelial cell proliferation involved in wound healing (GO:0060054), elastin catabolic process (GO:0060309), negative regulation of type I interferon-mediated signaling pathway (GO:0060339), positive regulation of type I interferon-mediated signaling pathway (GO:0060340), bronchiole development (GO:0060435), cellular response to virus (GO:0098586), response to amyloid-beta (GO:1904645), negative regulation of endothelial cell-matrix adhesion (GO:1904905), positive regulation of gene expression (GO:0010628)

GO Molecular Function (12): core promoter sequence-specific DNA binding (GO:0001046), endopeptidase activity (GO:0004175), metalloendopeptidase activity (GO:0004222), serine-type endopeptidase activity (GO:0004252), calcium ion binding (GO:0005509), collagen binding (GO:0005518), zinc ion binding (GO:0008270), sequence-specific DNA binding (GO:0043565), peptidase activity (GO:0008233), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)

GO Cellular Component (5): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), nucleus (GO:0005634), cytoplasm (GO:0005737), extracellular matrix (GO:0031012)

Reactome top-level categories

Rollup of top-2 pathways:

CategoryPathways
Degradation of the extracellular matrix1
Extracellular matrix organization1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
regulation of transcription by RNA polymerase II2
transcription by RNA polymerase II2
lung development2
type I interferon-mediated signaling pathway2
regulation of type I interferon-mediated signaling pathway2
peptidase activity2
endopeptidase activity2
cellular anatomical structure2
negative regulation of DNA-templated transcription1
protein metabolic process1
intracellular protein transport1
protein localization to nucleus1
import into nucleus1
establishment of protein localization to organelle1
cellular component disassembly1
extracellular matrix organization1
extracellular structure organization1
external encapsulating structure organization1
catabolic process1
collagen metabolic process1
positive regulation of type I interferon production1
interferon-alpha production1
regulation of interferon-alpha production1
wound healing, spreading of cells1
positive regulation of DNA-templated transcription1
anatomical structure development1
regulation of defense response to virus1
wound healing1
positive regulation of epithelial cell proliferation1
glycoprotein catabolic process1
elastin metabolic process1
negative regulation of cytokine-mediated signaling pathway1
negative regulation of innate immune response1
positive regulation of cytokine-mediated signaling pathway1
positive regulation of innate immune response1
respiratory tube development1
response to virus1
response to nitrogen compound1
response to oxygen-containing compound1
negative regulation of cell-matrix adhesion1

Protein interactions and networks

STRING

2106 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MMP12ELNP15502943
MMP12TIMP1P01033907
MMP12ELANEP08246740
MMP12CCL2P13500730
MMP12IL1BP01584729
MMP12TGFB1P01137724
MMP12IL6P05231718
MMP12CTSSP25774714
MMP12TNFP01375711
MMP12FN1P02751705
MMP12ITGB6P18564701
MMP12IL13P35225683
MMP12TIMP2P16035681
MMP12CD68P34810647
MMP12TIMP4Q99727641

IntAct

4 interactions, top by confidence:

ABTypeScore
ELNMMP12psi-mi:“MI:0194”(cleavage reaction)0.440
MMP12HNRNPCpsi-mi:“MI:0915”(physical association)0.400
SARAFA2ML1psi-mi:“MI:0914”(association)0.350

BioGRID (6): MMP12 (Proximity Label-MS), MMP12 (Affinity Capture-MS), MMP16 (Negative Genetic), MMP12 (Negative Genetic), MMP12 (Proximity Label-MS), APP (Reconstituted Complex)

ESM2 similar proteins: A5HMM7, B2KNH9, B5LYJ9, C0HJM8, C0HLU1, C0HM45, D4AEP7, O13065, O23547, O60882, O70138, O81320, O88766, P02874, P03956, P08253, P08688, P09353, P0DQV9, P13943, P18670, P19667, P21692, P22894, P28053, P30617, P33434, P33436, P39900, P42664, P49329, P79227, P81180, P83886, P86626, Q03380, Q39487, Q43418, Q6F495, Q6Y4Q5

Diamond homologs: A4KX75, D0EM77, G5EBU3, O04529, O18733, O18767, O18927, O23507, O55123, O55761, O60882, O62806, O77656, P03956, P03957, P07152, P08253, P08254, P09237, P09238, P13943, P14780, P21692, P22757, P23097, P28862, P28863, P29136, P33434, P33435, P33436, P34960, P39900, P41245, P41246, P45452, P50280, P50281, P50282, P50757

SIGNOR signaling

6 interactions.

AEffectBMechanism
MMP12“down-regulates quantity by destabilization”F12cleavage
MMP12“down-regulates quantity by destabilization”FGAcleavage
MMP12up-regulatesECM_disassembly
MMP12down-regulatesECM

Disease & clinical

Clinical variants and AI predictions

ClinVar

39 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance29
Likely benign4
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

955 predictions. Top by Δscore:

VariantEffectΔscore
11:102864141:CTT:Cdonor_loss1.0000
11:102864142:TTAC:Tdonor_loss1.0000
11:102864143:TA:Tdonor_loss1.0000
11:102864144:A:ACdonor_gain1.0000
11:102864144:ACTG:Adonor_loss1.0000
11:102864145:C:CTdonor_gain1.0000
11:102864145:CT:Cdonor_gain1.0000
11:102864145:CTG:Cdonor_gain1.0000
11:102864145:CTGT:Cdonor_gain1.0000
11:102864145:CTGTT:Cdonor_gain1.0000
11:102864248:CATAC:Cacceptor_gain1.0000
11:102864250:TAC:Tacceptor_gain1.0000
11:102864252:CCTG:Cacceptor_loss1.0000
11:102864253:CTGA:Cacceptor_loss1.0000
11:102866310:ATTAC:Adonor_loss1.0000
11:102866311:TTA:Tdonor_loss1.0000
11:102866312:TACC:Tdonor_loss1.0000
11:102866313:A:AGdonor_loss1.0000
11:102866314:C:Adonor_loss1.0000
11:102866386:C:CTacceptor_gain1.0000
11:102867264:TCCTA:Tdonor_loss1.0000
11:102867265:CCTAC:Cdonor_loss1.0000
11:102867266:CTA:Cdonor_loss1.0000
11:102867267:TA:Tdonor_loss1.0000
11:102867268:A:ACdonor_gain1.0000
11:102867269:C:CCdonor_gain1.0000
11:102867269:C:Tdonor_loss1.0000
11:102867269:CCTGT:Cdonor_gain1.0000
11:102867389:GTCTC:Gacceptor_gain1.0000
11:102867391:CTC:Cacceptor_gain1.0000

AlphaMissense

3154 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:102865837:C:GA382P0.990
11:102871814:A:CF163L0.988
11:102871814:A:TF163L0.988
11:102871816:A:GF163L0.988
11:102871697:A:CF174L0.986
11:102871697:A:TF174L0.986
11:102871699:A:GF174L0.986
11:102866360:C:GA334P0.983
11:102871882:A:GW141R0.980
11:102871882:A:TW141R0.980
11:102864167:C:GA431P0.978
11:102867313:C:GA290P0.977
11:102865834:C:GA383P0.975
11:102865833:G:TA383D0.974
11:102871856:G:CF149L0.974
11:102871856:G:TF149L0.974
11:102871858:A:GF149L0.974
11:102868049:C:GA216P0.971
11:102873011:C:AQ68H0.971
11:102873011:C:GQ68H0.971
11:102868011:A:CH228Q0.970
11:102868011:A:TH228Q0.970
11:102871664:A:CF185L0.970
11:102871664:A:TF185L0.970
11:102871666:A:GF185L0.970
11:102867984:G:CF237L0.968
11:102867984:G:TF237L0.968
11:102867986:A:GF237L0.968
11:102871698:A:CF174C0.968
11:102867995:C:GA234P0.967

dbSNP variants (sampled 300 via entrez): RS1000028164 (11:102864555 G>A,T), RS1000416970 (11:102871752 A>G,T), RS1000927175 (11:102871364 A>G), RS1001679108 (11:102872568 C>G,T), RS1002113699 (11:102867619 T>C), RS1002420340 (11:102874505 T>A), RS1003627380 (11:102862368 T>C), RS1003686487 (11:102876210 T>C), RS1003687414 (11:102875800 T>A), RS1003714830 (11:102869477 G>A), RS1003788332 (11:102869110 A>G), RS1005747831 (11:102872401 C>T), RS1006003690 (11:102867225 A>T), RS1006083099 (11:102873632 C>G), RS1007604389 (11:102868967 C>T)

Disease associations

OMIM: gene MIM:601046 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

25 associations (top):

StudyTraitp-value
GCST001529_3Alzheimer’s disease1.000000e-06
GCST002350_5Chronic obstructive pulmonary disease (severe)3.000000e-09
GCST002525_18Local histogram emphysema pattern2.000000e-07
GCST002525_21Local histogram emphysema pattern7.000000e-09
GCST002525_4Local histogram emphysema pattern1.000000e-08
GCST002525_7Local histogram emphysema pattern3.000000e-09
GCST002665_4Cerebrospinal fluid levels of Alzheimer’s disease-related proteins2.000000e-44
GCST002945_19Emphysema imaging phenotypes5.000000e-07
GCST002945_36Emphysema imaging phenotypes1.000000e-07
GCST002945_43Emphysema imaging phenotypes4.000000e-07
GCST002945_44Emphysema imaging phenotypes6.000000e-06
GCST002945_45Emphysema imaging phenotypes7.000000e-07
GCST003262_36Post bronchodilator FEV13.000000e-06
GCST003262_654Post bronchodilator FEV11.000000e-06
GCST003262_775Post bronchodilator FEV11.000000e-06
GCST003262_809Post bronchodilator FEV11.000000e-06
GCST003264_384Post bronchodilator FEV1/FVC ratio6.000000e-10
GCST003264_4Post bronchodilator FEV1/FVC ratio5.000000e-10
GCST003264_6Post bronchodilator FEV1/FVC ratio8.000000e-10
GCST003264_662Post bronchodilator FEV1/FVC ratio8.000000e-07
GCST003265_456Post bronchodilator FEV1/FVC ratio in COPD4.000000e-06
GCST003265_459Post bronchodilator FEV1/FVC ratio in COPD4.000000e-06
GCST006039_3Peanut allergy3.000000e-07
GCST006585_1814Blood protein levels5.000000e-77
GCST009731_45Blood protein levels in cardiovascular risk3.000000e-171

EFO canonical traits (7, from GWAS)

EFO IDTrait name
EFO:0005850emphysema pattern measurement
EFO:0004744matrix metalloproteinase measurement
EFO:0006514Alzheimer’s disease biomarker measurement
EFO:0007626emphysema imaging measurement
EFO:0004314forced expiratory volume
EFO:0004713FEV/FVC ratio
EFO:0007017peanut allergy measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL4393 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

7 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 146,774 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL734ACETOHYDROXAMIC ACID47,079
CHEMBL279785MARIMASTAT329,447
CHEMBL50QUERCETIN374,559
CHEMBL151LUTEOLIN223,523
CHEMBL19611ILOMASTAT212,065
CHEMBL1233524MK-3281166
CHEMBL4859268AGG-523135

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — M10: Matrix metallopeptidase

Most potent curated ligand interactions (9 total), top 9:

LigandActionAffinityParameter
BAY-7598Binding11.4pKd
compound 20 [PMID: 22153340]Inhibition10.0pIC50
ilomastatInhibition9.34pIC50
AZD6605Inhibition9.22pIC50
RXP470.1Inhibition8.62pKi
AZD1236Inhibition8.21pIC50
compound 1 [PMID: 24900526]Inhibition6.54pIC50
TP0556351Inhibition5.86pIC50
compound 5 [PMID: 24900526]Inhibition4.89pIC50

Binding affinities (BindingDB)

165 measured of 273 human assays (274 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
(2S)-3-methyl-2-{[12-({[2-(thiophen-2-yl)ethyl]carbamoyl}amino)-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-]sulfonamido}butanoic acidIC501.1 nM
(2S)-2-({4-[4-(1-benzofuran-2-amido)phenyl]benzene}sulfonamido)-3-methylbutanoic acidIC501.3 nM
(2S)-2-({12-[(cyclopentylcarbamoyl)amino]-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-}sulfonamido)-3-methylbutanoic acidIC502.1 nM
(2S)-3-methyl-2-({12-[(thiophen-3-ylcarbamoyl)amino]-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-}sulfonamido)butanoic acidIC503.3 nM
(2S)-3-methyl-2-({12-[(propoxycarbonyl)amino]-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-}sulfonamido)butanoic acidIC5010 nM
(2S)-3-methyl-2-[(12-{[(2-methylpropoxy)carbonyl]amino}-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-)sulfonamido]butanoic acidIC5010 nM
(2S)-2-[(12-{[(2-fluoroethoxy)carbonyl]amino}-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-)sulfonamido]-3-methylbutanoic acidIC5010 nM
(4S)-5-[3-(carboxymethyl)piperidin-1-yl]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acidKI12 nMUS-8691753
(4S)-5-[3-(carboxymethyl)anilino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acidKI18.1 nMUS-8691753
(4S)-5-[[(2S)-1-amino-3-hydroxy-1-oxopropan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acidKI31 nMUS-8691753
(4S)-5-amino-4-[[(2S)-3-carboxy-2-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]propanoyl]amino]-5-oxopentanoic acidKI39 nMUS-8691753
(4S)-5-[[(2S)-1,5-diamino-1,5-dioxopentan-2-yl]amino]-5-oxo-4-[3-[3-(4-phenylphenyl)-1,2-oxazol-5-yl]propanoylamino]pentanoic acidKI39.3 nMUS-8691753
(4S)-5-[[(2S)-1,5-diamino-1,5-dioxopentan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acidKI45 nMUS-8691753
Inhibitor, 18KI47 nM
(4S)-5-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acidKI49 nMUS-8691753
(3S)-4-amino-3-[[(2S)-3-carboxy-2-[3-[3-(4-phenylphenyl)-1,2-oxazol-5-yl]propanoylamino]propanoyl]amino]-4-oxobutanoic acidKI52 nMUS-8691753
(4S)-5-[[(2S)-1-amino-3-carboxy-1-oxopropan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acidKI55 nMUS-8691753
5-[2-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[3-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-2-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[3-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-4-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[[4-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[[2-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
[3-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]phenyl]methyl (2S)-2-amino-3-methylbutanoateIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[3-[4-[[4-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-4-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[[3-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
3-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]-N-methylbenzamideIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(2-methoxy-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(2-ethoxy-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(2-propan-2-yloxy-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]pyridine-3-carboxamideIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[2-methyl-4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(2-methyl-4-pyridinyl)oxymethyl]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[6-methyl-4-[4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[3-chloro-4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[3-fluoro-4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[3-[4-[[2-(hydroxymethyl)-4-pyridinyl]methoxy]phenyl]sulfanyl-4-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(2-methyl-4-pyridinyl)methylamino]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[methyl-[(2-methyl-4-pyridinyl)methyl]amino]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
4-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]pyridine-2-carboxamideIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[2-[4-[(3-methylphenyl)methoxy]phenyl]sulfanylphenyl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-1-oxidopyridin-1-ium-3-yl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[1-methyl-4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanylpyrazol-5-yl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[3-methyl-5-[4-[(3-methylphenyl)methoxy]phenyl]sulfanylimidazol-4-yl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-1,3-oxazol-5-yl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
5-[1-methyl-5-[4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanylimidazol-4-yl]imidazolidine-2,4-dioneIC5055 nMUS-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF
Inhibitor, 17KI57 nM

ChEMBL bioactivities

710 potent at pChembl≥5 of 792 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.07IC500.085nMBAY-7598
10.00IC500.1nMCHEMBL1935285
10.00IC500.1nMCHEMBL1935286
9.72Ki0.19nMCHEMBL507420
9.72Ki0.19nMCHEMBL5191016
9.70IC500.2nMCHEMBL573715
9.70IC500.2nMCHEMBL179288
9.70IC500.2nMCHEMBL1935287
9.70IC500.2nMCHEMBL1935288
9.62IC500.24nMCHEMBL111856
9.62Ki0.24nMCHEMBL507420
9.59Ki0.26nMCHEMBL507420
9.59Ki0.26nMCHEMBL4581500
9.55Ki0.28nMCHEMBL2316257
9.52Ki0.3nMCHEMBL3675605
9.52IC500.3nMCHEMBL1935304
9.43IC500.368nMCHEMBL5288452
9.40IC500.4nMCHEMBL561312
9.40IC500.4nMCHEMBL1935284
9.40IC500.4nMCHEMBL1935290
9.34IC500.46nMILOMASTAT
9.28Ki0.52nMILOMASTAT
9.25IC500.566nMCHEMBL5280430
9.21Ki0.61nMCHEMBL115727
9.15IC500.7nMCHEMBL1935280
9.07IC500.85nMCHEMBL573715
9.05Ki0.9nMCHEMBL4435285
9.05IC500.9nMCHEMBL523683
9.05IC500.89nMCHEMBL573715
9.03IC500.93nMCHEMBL2337131
9.02IC500.95nMCHEMBL366111
9.00Ki1nMCHEMBL2385483
9.00Ki1nMCHEMBL3133269
9.00Ki1nMCHEMBL4520279
9.00Ki1nMCHEMBL4764575
9.00IC501nMILOMASTAT
9.00IC501nMCHEMBL1935291
8.98Ki1.05nMCHEMBL3675573
8.96Ki1.1nMCHEMBL4751015
8.96IC501.1nMCHEMBL493356
8.92Ki1.2nMCHEMBL4739996
8.92IC501.2nMCHEMBL5199189
8.92IC501.2nMCHEMBL1935292
8.89IC501.3nMCHEMBL5183245
8.85IC501.4nMCHEMBL550038
8.80IC501.6nMCHEMBL1935300
8.79Ki1.63nMCHEMBL3675563
8.77IC501.7nMCHEMBL77163
8.77IC501.698nMCHEMBL77163
8.74IC501.8nMCHEMBL3958969

PubChem BioAssay actives

643 with measured affinity, of 1139 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(2S)-2-[[8-(5-chlorofuran-2-yl)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid638695: Inhibition of human MMP-12ic500.0001uM
(2S)-3-methyl-2-[[8-(5-methylfuran-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0001uM
(2R)-N-hydroxy-3-methyl-2-[(4-phenylphenyl)sulfonyl-propan-2-yloxyamino]butanamide440420: Inhibition of autoactivated human pro-MMP12 after 4 hrs by fluorimetryic500.0002uM
(4R)-5-amino-4-[[(2R)-2-[[(2R)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-4-carboxybutanoyl]amino]-5-oxopentanoic acid1863959: Inhibition of human MMP-12 expressed in Escherichia coli BL21(DE3) using Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 as substrate preincubated for 30 mins followed by susbstrate addition by photon-counter spectrophotometer analysiski0.0002uM
N-hydroxy-2-[2-[4-(4-methoxyphenoxy)phenyl]sulfonylphenyl]acetamide440420: Inhibition of autoactivated human pro-MMP12 after 4 hrs by fluorimetryic500.0002uM
(4S)-5-amino-4-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-4-carboxybutanoyl]amino]-5-oxopentanoic acid349385: Inhibition of MMP12ki0.0002uM
(2S)-3-methyl-2-[(8-thiophen-2-yldibenzofuran-3-yl)sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0002uM
(2S)-3-methyl-2-[[8-(5-methylthiophen-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0002uM
(4R)-5-amino-4-[[(2S)-2-[[2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-4-carboxybutanoyl]amino]-5-oxopentanoic acid1799769: Enzyme Assay from Article 10.1074/jbc.M112.380782: “Simple Pseudo-dipeptides with a P2’ Glutamate: A NOVEL INHIBITOR FAMILY OF MATRIX METALLOPROTEASES AND OTHER METZINCINS.”ki0.0002uM
4-[[4-(4-fluorophenoxy)phenyl]sulfonylamino]-N-hydroxyoxane-4-carboxamide109242: Inhibition of matrix metalloprotease-12ic500.0002uM
(4S)-5-amino-4-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]propanoyl]amino]-5-oxopentanoic acid1524641: Inhibition of human MMP12ki0.0003uM
(2S)-3-methyl-2-[[8-[5-(oxolan-3-yl)-1,2,4-oxadiazol-3-yl]dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0003uM
[(2S)-3-[[(2S)-1-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-2-[[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]methyl]-3-oxopropyl]-(4-bromophenyl)phosphinic acid1524641: Inhibition of human MMP12ki0.0003uM
(2S)-3-methyl-2-[[4-[5-(5-methylthiophen-2-yl)-1,2-oxazol-3-yl]phenyl]sulfonylamino]butanoic acid1937792: Inhibition of MMP12 (unknown origin)ic500.0004uM
(2S)-2-[[8-(methoxycarbonylamino)dibenzothiophen-3-yl]sulfonylamino]-3-methylbutanoic acid427755: Inhibition of human recombinant MMP12ic500.0004uM
(2S)-2-[[8-(furan-3-yl)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid638695: Inhibition of human MMP-12ic500.0004uM
(2S)-3-methyl-2-[[8-(1H-pyrrol-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0004uM
(2R)-N’-hydroxy-N-[(2S)-3-(1H-indol-3-yl)-1-(methylamino)-1-oxopropan-2-yl]-2-(2-methylpropyl)butanediamide1912254: Inhibition of recombinant human MMP12 using MOCAc-Pro-Leu-Gly-Leu-A2pr(Dnp)-Ala-Arg-NH2 as substrate preincubated for 15 mins followed by substrate addition by fluroscence based assayic500.0005uM
(2S)-2-[[4-[5-(5-ethylthiophen-2-yl)-1,2-oxazol-3-yl]phenyl]sulfonylamino]-3-methylbutanoic acid1937792: Inhibition of MMP12 (unknown origin)ic500.0006uM
(2S)-3-methyl-2-[[8-[3-(trifluoromethyl)pyrazol-1-yl]dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0007uM
(2E)-2-[(2E,4E)-5-[3-[6-[3-[2-[2-[3-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]propanoyl]amino]-4-carboxybutanoyl]amino]propoxy]ethoxy]ethoxy]propylamino]-6-oxohexyl]-1,1-dimethyl-6,8-disulfobenzo[e]indol-3-ium-2-yl]penta-2,4-dienylidene]-3-ethyl-1,1-dimethyl-8-sulfobenzo[e]indole-6-sulfonate1524641: Inhibition of human MMP12ki0.0009uM
(2S)-3-methyl-2-[[8-(thiophen-3-ylcarbamoylamino)dibenzofuran-3-yl]sulfonylamino]butanoic acid1798893: MMP Inhibition Assay from Article 10.1021/jm900093d: “A selective matrix metalloprotease 12 inhibitor for potential treatment of chronic obstructive pulmonary disease (COPD): discovery of (S)-2-(8-(methoxycarbonylamino)dibenzo[b,d]furan-3-sulfonamido)-3-methylbutanoic acid (MMP408).”ic500.0009uM
2-(2,5-dichlorophenyl)sulfonyl-N-hydroxy-6-phenoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide731523: Inhibition of MMP12 (unknown origin)ic500.0009uM
(3S,4R)-4-[4-[(2,4-dichlorophenyl)methoxy]phenyl]sulfonyl-N,3-dihydroxyoxane-3-carboxamide240999: Inhibition of matrix metalloprotease 12ic500.0009uM
(6S,7R,10S)-10-N-[(2S)-5-(diaminomethylideneamino)-1-(methylamino)-1-oxopentan-2-yl]-6-N-hydroxy-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-6,10-dicarboxamide1701081: Inhibition of human recombinant MMP12 using Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 substrate by spectrophotometryki0.0010uM
[(2S)-3-[[(2S)-1-[[(2S)-1-[3-[2-[2-[3-(2,3-ditritiopropanoylamino)propoxy]ethoxy]ethoxy]propylamino]-3-hydroxy-1-oxopropan-2-yl]amino]-1-oxobutan-2-yl]amino]-3-oxo-2-[[3-[4-[3-(trifluoromethyl)diazirin-3-yl]phenyl]-1,2-oxazol-5-yl]methyl]propyl]-phenylphosphinic acid1524649: Inhibition of human MMP12 by photoaffinity probe based assayki0.0010uM
(2R,3R)-1-[4-[(2-chloro-4-fluorophenyl)methoxy]phenyl]sulfonyl-N,3-dihydroxy-3-methylpiperidine-2-carboxamide1445582: Inhibition of human MMP12 using Mca-PQGL-(3-[2, 4-dinitrophenyl]-L-2, 3-diaminopropionyl)-AR-OH as substrate after 2 to 4 hrs by fluorescence assayic500.0010uM
(2S)-3-methyl-2-[[8-(1,3-thiazol-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0010uM
(2S)-3-methyl-2-[[8-(1H-pyrazol-5-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0010uM
(2S)-N-hydroxy-1-[2-(4-methoxyphenyl)ethylsulfonyl]pyrrolidine-2-carboxamide748347: Inhibition of MMP12 (unknown origin)-mediated Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 by fluorimetric assayki0.0010uM
(6S,7R,10S)-6-(hydroxycarbamoyl)-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carboxylic acid1701081: Inhibition of human recombinant MMP12 using Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 substrate by spectrophotometryki0.0011uM
(2S)-3-methyl-2-[[8-(2-thiophen-2-ylethylcarbamoylamino)dibenzofuran-3-yl]sulfonylamino]butanoic acid1798893: MMP Inhibition Assay from Article 10.1021/jm900093d: “A selective matrix metalloprotease 12 inhibitor for potential treatment of chronic obstructive pulmonary disease (COPD): discovery of (S)-2-(8-(methoxycarbonylamino)dibenzo[b,d]furan-3-sulfonamido)-3-methylbutanoic acid (MMP408).”ic500.0011uM
(2S)-2-[[(6S,7R,10S)-6-(hydroxycarbamoyl)-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carbonyl]amino]pentanedioic acid1701081: Inhibition of human recombinant MMP12 using Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 substrate by spectrophotometryki0.0012uM
N-hydroxy-4-[4-[4-(4-methoxyphenyl)triazol-1-yl]phenyl]sulfonyloxane-4-carboxamide1863880: Inhibition of MMP-12 (unknown origin)ic500.0012uM
(2S)-3-methyl-2-[[8-(5-methyl-1,3-thiazol-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid638695: Inhibition of human MMP-12ic500.0012uM
(3S)-4-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-(2-amino-2-oxoethyl)pyrrolidin-1-yl]-4-methyl-1-oxopentan-2-yl]-methylamino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-3-[[(2S)-4-amino-4-oxo-2-[4-[(4-phenoxyphenyl)sulfonylamino]butanoylamino]butanoyl]amino]-4-oxobutanoic acid1912254: Inhibition of recombinant human MMP12 using MOCAc-Pro-Leu-Gly-Leu-A2pr(Dnp)-Ala-Arg-NH2 as substrate preincubated for 15 mins followed by substrate addition by fluroscence based assayic500.0013uM
(2S)-3-methyl-2-[[8-(2-oxo-1,3-oxazolidin-3-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid427755: Inhibition of human recombinant MMP12ic500.0014uM
3-methyl-2-[[8-(2-oxo-1,3-oxazolidin-3-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid1799769: Enzyme Assay from Article 10.1074/jbc.M112.380782: “Simple Pseudo-dipeptides with a P2’ Glutamate: A NOVEL INHIBITOR FAMILY OF MATRIX METALLOPROTEASES AND OTHER METZINCINS.”ic500.0014uM
(2S)-2-[[8-(5-cyclopropyl-1,2,4-oxadiazol-3-yl)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid638695: Inhibition of human MMP-12ic500.0016uM
(4-benzylphenyl)methyl-[4-(4-chlorophenyl)-2-[[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]carbamoyl]butyl]phosphinic acid109241: Inhibition of matrix metalloprotease-12ic500.0017uM
N-[[3-[3-[2-(hydroxycarbamoyl)piperidin-1-yl]sulfonylpropoxy]phenyl]methyl]-4-oxo-3H-quinazoline-2-carboxamide1328782: Inhibition of recombinant human AMPA-activated MMP12 using Cy3-PLGLK(Cy5Q)AR-NH2 as substrate measured after 40 mins by spectrofluorimetric methodic500.0018uM
(2R)-2-[[8-(methoxycarbonylamino)dibenzothiophen-3-yl]sulfonylamino]-3-methylbutanoic acid427755: Inhibition of human recombinant MMP12ic500.0018uM
(3S)-4-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-(2-amino-2-oxoethyl)pyrrolidin-1-yl]-4-methylsulfanyl-1-oxobutan-2-yl]-methylamino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-3-[[(2S)-4-amino-4-oxo-2-[4-[(4-phenoxyphenyl)sulfonylamino]butanoylamino]butanoyl]amino]-4-oxobutanoic acid1912254: Inhibition of recombinant human MMP12 using MOCAc-Pro-Leu-Gly-Leu-A2pr(Dnp)-Ala-Arg-NH2 as substrate preincubated for 15 mins followed by substrate addition by fluroscence based assayic500.0019uM
(4R)-5-amino-4-[[(2S)-4-carboxy-2-[3-[4-(4-phenylthiophen-2-yl)phenyl]propanoylamino]butanoyl]amino]-5-oxopentanoic acid1799769: Enzyme Assay from Article 10.1074/jbc.M112.380782: “Simple Pseudo-dipeptides with a P2’ Glutamate: A NOVEL INHIBITOR FAMILY OF MATRIX METALLOPROTEASES AND OTHER METZINCINS.”ki0.0019uM
(2S)-2-[[8-[5-(methoxymethyl)-1,2,4-oxadiazol-3-yl]dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid638695: Inhibition of human MMP-12ic500.0019uM
(2R)-N-[(2S)-1-[[(2S)-1,6-diamino-1-oxohexan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]-N’-hydroxy-2-(2-methylpropyl)butanediamide1172327: Inhibition of human recombinant MMP12 catalytic domain Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 fluorogenic substrateic500.0020uM
N-hydroxy-2-[(4-phenylphenyl)sulfonylamino]acetamide748347: Inhibition of MMP12 (unknown origin)-mediated Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 by fluorimetric assayki0.0020uM
(2S)-2-[[8-(methoxycarbonylamino)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid1798893: MMP Inhibition Assay from Article 10.1021/jm900093d: “A selective matrix metalloprotease 12 inhibitor for potential treatment of chronic obstructive pulmonary disease (COPD): discovery of (S)-2-(8-(methoxycarbonylamino)dibenzo[b,d]furan-3-sulfonamido)-3-methylbutanoic acid (MMP408).”ic500.0020uM
(2R)-N-hydroxy-1-[2-(4-phenylphenyl)ethylsulfonyl]pyrrolidine-2-carboxamide748347: Inhibition of MMP12 (unknown origin)-mediated Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 by fluorimetric assayki0.0020uM
(5S)-5-[[4-(4-ethoxyphenoxy)piperidin-1-yl]sulfonylmethyl]-5-methylimidazolidine-2,4-dione761928: Inhibition of MMP-12 (unknown origin) by fluorescence assayic500.0020uM

CTD chemical–gene interactions

56 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneincreases expression, increases methylation2
Nickelaffects expression, increases expression, decreases reaction2
Tetrachlorodibenzodioxinincreases expression, decreases reaction2
Cyclosporinedecreases methylation, increases expression2
Raloxifene Hydrochlorideaffects expression, affects cotreatment, decreases expression2
sotorasibaffects cotreatment, decreases expression1
methyleugenolincreases expression1
acetohydroxamic aciddecreases activity, affects binding1
2-methyl-4-isothiazolin-3-oneincreases expression1
trichostatin Aaffects expression, decreases reaction1
hydroxyhydroquinoneincreases expression1
trimellitic anhydrideincreases expression1
sodium arsenitedecreases expression1
stearic acidincreases expression1
perfluorodecanoic aciddecreases expression1
S-(1,2-dichlorovinyl)cysteineaffects response to substance, increases expression, decreases expression1
2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-onedecreases reaction, increases activity, increases expression1
3’-methoxy-4’-nitroflavonedecreases reaction, increases expression1
CGP 52608affects binding, increases reaction1
2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-oneincreases expression, decreases reaction, increases activity1
pyrazolanthronedecreases reaction, increases activity, increases expression1
lipopolysaccharide, E coli O55-B5affects cotreatment, increases expression, increases reaction1
abrineincreases expression1
fenbuconazoleincreases expression1
trametinibaffects cotreatment, decreases expression1
NVP-BKM120affects cotreatment, decreases expression1
Wortmannindecreases reaction, increases activity, increases expression1
Arsenic Trioxidedecreases expression1
Acroleinincreases secretion1
Azathioprinedecreases expression1

ChEMBL screening assays

191 unique, capped per target: 183 binding, 8 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1002878BindingBinding affinity to MMP12 assessed as enzyme mediated cleavage of compound by measuring increase in fluorescence after 16 hrs by HPLC-MSPhotodynamic molecular beacon triggered by fibroblast activation protein on cancer-associated fibroblasts for diagnosis and treatment of epithelial cancers. — J Med Chem
CHEMBL2211414ADMETProdrug conversion assessed as recombinant human MMP-12 mediated compound conversion to 2-((S)-2-((S)-1-(benzyloxycarbonyl)pyrrolidine-2-carboxamido)-N-(biphenyl-4-ylsulfonyl)-4-methylpentanamido)acetic acid by HPLC analysisTarget-Activated Prodrugs (TAPs) for the Autoregulated Inhibition of MMP12. — ACS Med Chem Lett

Cellosaurus cell lines

3 cell lines: 3 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B8KMAbcam HCT 116 MMP12 KOCancer cell lineMale
CVCL_B8YYAbcam MCF-7 MMP12 KOCancer cell lineFemale
CVCL_B9MVAbcam A-549 MMP12 KOCancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.