MMP12
gene geneOn this page
Also known as HME
Summary
MMP12 (matrix metallopeptidase 12, HGNC:7158) is a protein-coding gene on chromosome 11q22.2, encoding Macrophage metalloelastase (P39900). May be involved in tissue injury and remodeling.
This gene encodes a member of the peptidase M10 family of matrix metalloproteinases (MMPs). Proteins in this family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. The encoded preproprotein is proteolytically processed to generate the mature protease. This protease degrades soluble and insoluble elastin. This gene may play a role in aneurysm formation and mutations in this gene are associated with lung function and chronic obstructive pulmonary disease (COPD). This gene is part of a cluster of MMP genes on chromosome 11.
Source: NCBI Gene 4321 — RefSeq curated summary.
At a glance
- GWAS associations: 25
- Clinical variants (ClinVar): 39 total
- Druggable target: yes — 7 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002426
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7158 |
| Approved symbol | MMP12 |
| Name | matrix metallopeptidase 12 |
| Location | 11q22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HME |
| Ensembl gene | ENSG00000262406 |
| Ensembl biotype | protein_coding |
| OMIM | 601046 |
| Entrez | 4321 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000571244
RefSeq mRNA: 1 — MANE Select: NM_002426
NM_002426
CCDS: CCDS73375
Canonical transcript exons
ENST00000571244 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002632018 | 102865776 | 102865935 |
| ENSE00002648271 | 102867908 | 102868069 |
| ENSE00002651208 | 102867270 | 102867393 |
| ENSE00002656522 | 102872865 | 102873112 |
| ENSE00002657493 | 102871594 | 102871719 |
| ENSE00002662753 | 102866315 | 102866448 |
| ENSE00002665359 | 102862736 | 102863200 |
| ENSE00002674514 | 102871804 | 102871952 |
| ENSE00002679936 | 102864146 | 102864252 |
| ENSE00002680179 | 102874836 | 102874982 |
Expression profiles
Bgee: expression breadth ubiquitous, 133 present calls, max score 96.81.
FANTOM5 (CAGE): breadth broad, TPM avg 3.6912 / max 681.2844, expressed in 226 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 122029 | 3.6912 | 226 |
Top tissues by expression
269 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| periodontal ligament | UBERON:0008266 | 96.81 | gold quality |
| ileal mucosa | UBERON:0000331 | 94.91 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.32 | gold quality |
| decidua | UBERON:0002450 | 92.20 | gold quality |
| cartilage tissue | UBERON:0002418 | 92.13 | gold quality |
| vermiform appendix | UBERON:0001154 | 91.98 | gold quality |
| amniotic fluid | UBERON:0000173 | 89.37 | gold quality |
| colonic mucosa | UBERON:0000317 | 87.60 | gold quality |
| rectum | UBERON:0001052 | 85.75 | gold quality |
| caecum | UBERON:0001153 | 82.66 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.74 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 79.37 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 76.56 | gold quality |
| placenta | UBERON:0001987 | 76.10 | gold quality |
| gingiva | UBERON:0001828 | 74.23 | gold quality |
| gingival epithelium | UBERON:0001949 | 74.10 | gold quality |
| lymph node | UBERON:0000029 | 72.08 | gold quality |
| colonic epithelium | UBERON:0000397 | 70.51 | gold quality |
| stromal cell of endometrium | CL:0002255 | 68.42 | gold quality |
| tonsil | UBERON:0002372 | 66.86 | gold quality |
| duodenum | UBERON:0002114 | 64.28 | gold quality |
| pancreatic ductal cell | CL:0002079 | 64.11 | gold quality |
| gall bladder | UBERON:0002110 | 63.42 | gold quality |
| large intestine | UBERON:0000059 | 62.22 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 61.81 | gold quality |
| calcaneal tendon | UBERON:0003701 | 61.81 | gold quality |
| intestine | UBERON:0000160 | 61.75 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 61.36 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 61.05 | silver quality |
| colon | UBERON:0001155 | 61.04 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.88 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, EGR1, FOSL1, JUN, JUND, MAFB, PPARA, PPARG, RELA, SPIC, THRA, THRB, YBX1
miRNA regulators (miRDB)
27 targeting MMP12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-5004-5P | 99.68 | 66.63 | 1294 |
| HSA-MIR-891B | 99.59 | 69.81 | 1083 |
| HSA-MIR-451B | 99.55 | 68.28 | 1380 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-3675-3P | 99.09 | 67.70 | 968 |
| HSA-MIR-455-3P | 98.94 | 67.68 | 878 |
| HSA-MIR-4477A | 98.83 | 69.75 | 2952 |
| HSA-MIR-6715B-3P | 98.80 | 68.07 | 1204 |
| HSA-MIR-299-5P | 98.56 | 71.14 | 1140 |
| HSA-MIR-633 | 98.35 | 69.45 | 1167 |
| HSA-MIR-3977 | 98.00 | 68.17 | 1500 |
| HSA-MIR-6807-5P | 97.51 | 64.25 | 1046 |
| HSA-MIR-4264 | 96.35 | 64.76 | 1480 |
| HSA-MIR-4633-5P | 96.17 | 66.36 | 501 |
Literature-anchored findings (GeneRIF, showing 40)
- substrate specificity based on x ray crystallography (PMID:11575928)
- crystal structure in complex with hydroxamic acid inhibitor (PMID:11575929)
- These data suggest that polymorphisms in the MMP1 and MMP12 genes, but not MMP9, are either causative factors in smoking-related lung injury or are in linkage disequilibrium with causative polymorphisms. (PMID:11875051)
- The presence of MMP-12 has been demonstrated in multiple sclerosis (MS) lesions, particularly in foamy macrophages in actively demyelinating lesions, suggesting a role for MMP-12 during demyelination in MS. (PMID:12742660)
- Migration of monocytes/macrophages in vitro and in vivo is accompanied by MMP12-dependent tunnel formation and by neovascularization. (PMID:12858542)
- MMP-12 is expressed in and secreted by human bronchial epithelial cells (PMID:15474460)
- abnormal production of tropoelastin and fibrillin by heat in human skin and that their degradation by various MMP, such as MMP-12, may contribute to the accumulation of elastotic material in photoaged skin. (PMID:15654955)
- MMP-12 might be not only a prognostic marker, but also a valuable therapeutic target. (PMID:15709175)
- Chronic obstructive pulmonary disease patients produce greater quantities of MMP-12 than controls (PMID:15723202)
- findings provide novel evidence of a direct relationship between cigarette smoke exposure and MMP-12 in human airway epithelia and suggest several targets for modulation of this potentially pathogenic pathway (PMID:15781250)
- By regulating the proliferation of corneal epithelial cells, Wnt-7a and MMP-12 appear to contribute to corneal wound healing (PMID:15802269)
- NADPH oxidase restrains the MMP-12 activity of macrophages (PMID:15983040)
- cathepsin F, matrix metalloproteinases 11 and 12 are upregulated in cervical cancer (PMID:15989693)
- Matrix metalloproteinase 12, a proteinase that plays a critical role in mouse models, was the third most highly induced gene in smokers (ninefold, p < 0.0001). (PMID:16166618)
- matrix metalloproteinase 1, 3 and 12 haplotypes may associated with development of lung cancer, particularly among never smokers and men (PMID:16311244)
- Our findings indicate that human airway smooth muscle cells express and secrete MMP-12 that is up-regulated by IL-1beta and TNF-alpha. (PMID:16359550)
- analysis of substrate specificity of matrix metalloproteinase-12 (PMID:16481329)
- the association between the functional polymorphism of matrix metalloproteinases (MMPs) and the development of chronic obstructive pulmonary disease (COPD) (PMID:16676616)
- Protective role for stromal MMP-12 in lung tumor growth; the use of the human/mouse protein chips allows us to distinguish tumor and host-derived proteases (PMID:16912171)
- A new factor, MMP-12, regulates glioma invasiveness through interaction with tenascin-C. (PMID:17178873)
- NMR structure of matrix metalloproteinase 12 (PMID:17300109)
- High expression of MMP-12 in squamous laryngeal carcinoma was related to significant hyperplasia. (PMID:17357518)
- MMP-12 is an important oncogene in high-stage and high-grade endometrial adenocarcinoma. (PMID:17574772)
- Reliable and reproducible estimates of k(cat)and K(m) from only two or three progress curves were obtained using MMP12. (PMID:17706587)
- Results describe copy number aberrations in the SDHD and MMP12 genes in an affected Solar Keratosis and control cohort. (PMID:17727250)
- Inhibitor-binding-induced perturbations of the NMR spectra of MMP-1 and MMP-3 map to similar locations across MMP-12 and encompass the internal conformational adjustments (PMID:17997411)
- Smoking and disease itself may stimulate MMP-12 expression in airway compartments (sputum and bronchoalveolar lavage)from chronic obstructive pulmonary disease patients. (PMID:18001475)
- results indicate that resident alveolar macrophages and recruited neutrophils do not play a role in the delayed macrophage recruitment induced by rhMMP-12 (PMID:18001704)
- 357Asn/Ser polymorphism not related to generalized aggressive periodontitis (PMID:18052707)
- data suggest that MMP-2 -735C/T, MMP-9 -1562C/T and MMP-12 357Asn/Ser polymorphisms are not associated with susceptibility to severe CP in Turkish population. T allele of MMP-9 -1562 gene might be associated with decreased susceptibility to severe CP. (PMID:18155181)
- Alveolar macrophage matrix metalloproteinase 1 and 12 may have a role in the lung structural changes leading to the development of emphysema. (PMID:18259971)
- potential role for MMP12 -82 A/G and MMP13 -77 A/G combined polymorphisms in superficial endometriosis. As no association was found with deep infiltrating endometriosis, these polymorphisms might protect from a more in-depth penetration of tissues. (PMID:18308831)
- Bone Marrow Stromal (BMS) cells induce MMP-12 expression in prostate cancer cells, which results in invasive cells capable of degradation of type I collagen. (PMID:18324629)
- The amino acid preferences of the different subsites on the catalytic domain of MMP-12 were analyzed. (PMID:18334288)
- we conclude that one mechanism, by which MMP-12 induces IL-8/CXCL8 release from the alveolar epithelium, is the EGFR/ERK1/2/activating protein-1 pathway. (PMID:18390828)
- The expression of HME gene in gastric cancers may be related with lower possibility of metastasis and predict a better prognosis. (PMID:18396640)
- MMP-12 may be critical to the initiation and progression of atherosclerosis via degradation of the elastic layers and/or basement membrane. (PMID:18403602)
- NMR-derived structure of catalytic domain of MMP12 is complex with N-(dibenzo[b,d] thiophene-3-sulfonyl valine. (PMID:18425585)
- MMP-12 catalytic domain recognizes triple helical peptide models of collagen V with exosites and high activity (PMID:18539597)
- MMP-12 truncates and inactivates ELR+ CXC chemokines and generates CCL2, -7, -8, and -13 antagonists (PMID:18660381)
Cross-species orthologs
16 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mmp23bb | ENSDARG00000009825 |
| danio_rerio | mmp25b | ENSDARG00000010556 |
| danio_rerio | hpxa | ENSDARG00000012609 |
| danio_rerio | mmp30 | ENSDARG00000045887 |
| danio_rerio | mmp25a | ENSDARG00000077290 |
| danio_rerio | mmp13b | ENSDARG00000100794 |
| mus_musculus | Mmp12 | ENSMUSG00000049723 |
| rattus_norvegicus | Mmp12 | ENSRNOG00000030187 |
| drosophila_melanogaster | Mmp1 | FBGN0035049 |
| caenorhabditis_elegans | WBGENE00006987 | |
| caenorhabditis_elegans | WBGENE00010524 | |
| caenorhabditis_elegans | WBGENE00012185 | |
| caenorhabditis_elegans | WBGENE00012364 | |
| caenorhabditis_elegans | WBGENE00016283 | |
| caenorhabditis_elegans | WBGENE00020646 | |
| caenorhabditis_elegans | WBGENE00194737 |
Paralogs (23): MMP25 (ENSG00000008516), MMP2 (ENSG00000087245), MMP11 (ENSG00000099953), MMP9 (ENSG00000100985), MMP15 (ENSG00000102996), HPX (ENSG00000110169), MMP8 (ENSG00000118113), MMP19 (ENSG00000123342), MMP24 (ENSG00000125966), MMP7 (ENSG00000137673), MMP20 (ENSG00000137674), MMP27 (ENSG00000137675), MMP13 (ENSG00000137745), MMP3 (ENSG00000149968), MMP21 (ENSG00000154485), MMP16 (ENSG00000156103), MMP14 (ENSG00000157227), MMP10 (ENSG00000166670), MMP26 (ENSG00000167346), MMP23B (ENSG00000189409), MMP1 (ENSG00000196611), MMP17 (ENSG00000198598), MMP28 (ENSG00000271447)
Protein
Protein identifiers
Macrophage metalloelastase — P39900 (reviewed: P39900)
Alternative names: Macrophage elastase, Matrix metalloproteinase-12
All UniProt accessions (1): P39900
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1’ site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3.
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Tissue specificity. Found in alveolar macrophages but not in peripheral blood monocytes.
Cofactor. Binds 4 Ca(2+) ions per subunit. Binds 2 Zn(2+) ions per subunit.
Domain organisation. The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
Induction. By exposure to bacterial lipopolysaccharides (LPS). Inhibited by dexamethasone.
Similarity. Belongs to the peptidase M10A family.
RefSeq proteins (1): NP_002417* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000585 | Hemopexin-like_dom | Domain |
| IPR001818 | Pept_M10_metallopeptidase | Domain |
| IPR002477 | Peptidoglycan-bd-like | Domain |
| IPR006026 | Peptidase_Metallo | Domain |
| IPR018486 | Hemopexin_CS | Conserved_site |
| IPR018487 | Hemopexin-like_repeat | Repeat |
| IPR021158 | Pept_M10A_Zn_BS | Binding_site |
| IPR021190 | Pept_M10A | Family |
| IPR024079 | MetalloPept_cat_dom_sf | Homologous_superfamily |
| IPR033739 | M10A_MMP | Domain |
| IPR036365 | PGBD-like_sf | Homologous_superfamily |
| IPR036375 | Hemopexin-like_dom_sf | Homologous_superfamily |
Pfam: PF00045, PF00413, PF01471
Enzyme classification (BRENDA):
- EC 3.4.24.65 — macrophage elastase (BRENDA: 4 organisms, 95 substrates, 46 inhibitors, 48 Km, 48 kcat entries)
Substrate kinetics (BRENDA)
10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| FELN-100 | 0.001–0.0047 | 16 |
| MCA-PRO-LEU-GLY-LEU-DPA-ALA-ARG-NH2 | 0.113–0.241 | 16 |
| 2-AMINOBENZOYL-PLALWRSQ-2-(2,4-DINITROPHENYL)AMI | 0.0202–0.0249 | 2 |
| 2-AMINOBENZOYL-PLGLEEA-2-(2,4-DINITROPHENYL)AMIN | 0.0047–0.0091 | 2 |
| 2-AMINOBENZOYL-RPLALEESQ-2-(2,4-DINITROPHENYL)AM | 0.0075–0.029 | 2 |
| 2-AMINOBENZOYL-RPLALWEEQ-2-(2,4-DINITROPHENYL)AM | 0.0123–0.0146 | 2 |
| 2-AMINOBENZOYL-RPLALWESQ-2-(2,4-DINITROPHENYL)AM | 0.0068–0.0138 | 2 |
| 2-AMINOBENZOYL-RPLALWRSQ-2-(2,4-DINITROPHENYL)AM | 0.0144–0.0156 | 2 |
| 2-AMINOBENZOYL-RPLELWRSQ-2-(2,4-DINITROPHENYL)AM | 0.0088–0.0093 | 2 |
| 2-AMINOBENZOYL-RPLGLEEA-2-(2,4-DINITROPHENYL)AMI | 0.0103–0.0197 | 2 |
UniProt features (88 total): strand 33, binding site 25, turn 9, helix 7, repeat 4, glycosylation site 2, sequence variant 2, signal peptide 1, propeptide 1, chain 1, disulfide bond 1, short sequence motif 1, active site 1
Structure
Experimental structures (PDB)
86 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1Y93 | X-RAY DIFFRACTION | 1.03 |
| 1JK3 | X-RAY DIFFRACTION | 1.09 |
| 3F17 | X-RAY DIFFRACTION | 1.1 |
| 3F18 | X-RAY DIFFRACTION | 1.13 |
| 3F19 | X-RAY DIFFRACTION | 1.13 |
| 2OXW | X-RAY DIFFRACTION | 1.15 |
| 4GQL | X-RAY DIFFRACTION | 1.15 |
| 3F16 | X-RAY DIFFRACTION | 1.16 |
| 5D2B | X-RAY DIFFRACTION | 1.2 |
| 6EKN | X-RAY DIFFRACTION | 1.2 |
| 2OXU | X-RAY DIFFRACTION | 1.24 |
| 7OVY | X-RAY DIFFRACTION | 1.24 |
| 3F1A | X-RAY DIFFRACTION | 1.25 |
| 4GR8 | X-RAY DIFFRACTION | 1.3 |
| 3UVC | X-RAY DIFFRACTION | 1.3 |
| 5CXA | X-RAY DIFFRACTION | 1.3 |
| 6EOX | X-RAY DIFFRACTION | 1.3 |
| 5CZM | X-RAY DIFFRACTION | 1.3 |
| 3LJG | X-RAY DIFFRACTION | 1.31 |
| 5D3C | X-RAY DIFFRACTION | 1.31 |
| 2HU6 | X-RAY DIFFRACTION | 1.32 |
| 1RMZ | X-RAY DIFFRACTION | 1.34 |
| 5LAB | X-RAY DIFFRACTION | 1.34 |
| 4H30 | X-RAY DIFFRACTION | 1.43 |
| 6ELA | X-RAY DIFFRACTION | 1.49 |
| 4GR3 | X-RAY DIFFRACTION | 1.49 |
| 4GR0 | X-RAY DIFFRACTION | 1.5 |
| 4H76 | X-RAY DIFFRACTION | 1.5 |
| 3N2V | X-RAY DIFFRACTION | 1.55 |
| 3TS4 | X-RAY DIFFRACTION | 1.59 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P39900-F1 | 87.35 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 219
Ligand- & substrate-binding residues (25): 124; 158; 168; 170; 175; 176; 178; 180; 183; 190; 192; 194 …
Disulfide bonds (1): 282–470
Glycosylation sites (2): 20, 285
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-1442490 | Collagen degradation |
| R-HSA-1474228 | Degradation of the extracellular matrix |
| R-HSA-1474244 | Extracellular matrix organization |
MSigDB gene sets: 310 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_UP, MODULE_172, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_CELLULAR_RESPONSE_TO_VIRUS, GOBP_POSITIVE_REGULATION_OF_TYPE_I_INTERFERON_PRODUCTION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_REGULATION_OF_DEFENSE_RESPONSE_TO_VIRUS, GOBP_RESPONSE_TO_PEPTIDE, chr11q22, GOBP_RESPONSE_TO_TYPE_I_INTERFERON, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_INNATE_IMMUNE_RESPONSE
GO Biological Process (20): negative regulation of transcription by RNA polymerase II (GO:0000122), proteolysis (GO:0006508), protein import into nucleus (GO:0006606), extracellular matrix disassembly (GO:0022617), extracellular matrix organization (GO:0030198), collagen catabolic process (GO:0030574), positive regulation of interferon-alpha production (GO:0032727), wound healing, spreading of epidermal cells (GO:0035313), positive regulation of transcription by RNA polymerase II (GO:0045944), lung alveolus development (GO:0048286), regulation of defense response to virus by host (GO:0050691), positive regulation of epithelial cell proliferation involved in wound healing (GO:0060054), elastin catabolic process (GO:0060309), negative regulation of type I interferon-mediated signaling pathway (GO:0060339), positive regulation of type I interferon-mediated signaling pathway (GO:0060340), bronchiole development (GO:0060435), cellular response to virus (GO:0098586), response to amyloid-beta (GO:1904645), negative regulation of endothelial cell-matrix adhesion (GO:1904905), positive regulation of gene expression (GO:0010628)
GO Molecular Function (12): core promoter sequence-specific DNA binding (GO:0001046), endopeptidase activity (GO:0004175), metalloendopeptidase activity (GO:0004222), serine-type endopeptidase activity (GO:0004252), calcium ion binding (GO:0005509), collagen binding (GO:0005518), zinc ion binding (GO:0008270), sequence-specific DNA binding (GO:0043565), peptidase activity (GO:0008233), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (5): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), nucleus (GO:0005634), cytoplasm (GO:0005737), extracellular matrix (GO:0031012)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Degradation of the extracellular matrix | 1 |
| Extracellular matrix organization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of transcription by RNA polymerase II | 2 |
| transcription by RNA polymerase II | 2 |
| lung development | 2 |
| type I interferon-mediated signaling pathway | 2 |
| regulation of type I interferon-mediated signaling pathway | 2 |
| peptidase activity | 2 |
| endopeptidase activity | 2 |
| cellular anatomical structure | 2 |
| negative regulation of DNA-templated transcription | 1 |
| protein metabolic process | 1 |
| intracellular protein transport | 1 |
| protein localization to nucleus | 1 |
| import into nucleus | 1 |
| establishment of protein localization to organelle | 1 |
| cellular component disassembly | 1 |
| extracellular matrix organization | 1 |
| extracellular structure organization | 1 |
| external encapsulating structure organization | 1 |
| catabolic process | 1 |
| collagen metabolic process | 1 |
| positive regulation of type I interferon production | 1 |
| interferon-alpha production | 1 |
| regulation of interferon-alpha production | 1 |
| wound healing, spreading of cells | 1 |
| positive regulation of DNA-templated transcription | 1 |
| anatomical structure development | 1 |
| regulation of defense response to virus | 1 |
| wound healing | 1 |
| positive regulation of epithelial cell proliferation | 1 |
| glycoprotein catabolic process | 1 |
| elastin metabolic process | 1 |
| negative regulation of cytokine-mediated signaling pathway | 1 |
| negative regulation of innate immune response | 1 |
| positive regulation of cytokine-mediated signaling pathway | 1 |
| positive regulation of innate immune response | 1 |
| respiratory tube development | 1 |
| response to virus | 1 |
| response to nitrogen compound | 1 |
| response to oxygen-containing compound | 1 |
| negative regulation of cell-matrix adhesion | 1 |
Protein interactions and networks
STRING
2106 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MMP12 | ELN | P15502 | 943 |
| MMP12 | TIMP1 | P01033 | 907 |
| MMP12 | ELANE | P08246 | 740 |
| MMP12 | CCL2 | P13500 | 730 |
| MMP12 | IL1B | P01584 | 729 |
| MMP12 | TGFB1 | P01137 | 724 |
| MMP12 | IL6 | P05231 | 718 |
| MMP12 | CTSS | P25774 | 714 |
| MMP12 | TNF | P01375 | 711 |
| MMP12 | FN1 | P02751 | 705 |
| MMP12 | ITGB6 | P18564 | 701 |
| MMP12 | IL13 | P35225 | 683 |
| MMP12 | TIMP2 | P16035 | 681 |
| MMP12 | CD68 | P34810 | 647 |
| MMP12 | TIMP4 | Q99727 | 641 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ELN | MMP12 | psi-mi:“MI:0194”(cleavage reaction) | 0.440 |
| MMP12 | HNRNPC | psi-mi:“MI:0915”(physical association) | 0.400 |
| SARAF | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (6): MMP12 (Proximity Label-MS), MMP12 (Affinity Capture-MS), MMP16 (Negative Genetic), MMP12 (Negative Genetic), MMP12 (Proximity Label-MS), APP (Reconstituted Complex)
ESM2 similar proteins: A5HMM7, B2KNH9, B5LYJ9, C0HJM8, C0HLU1, C0HM45, D4AEP7, O13065, O23547, O60882, O70138, O81320, O88766, P02874, P03956, P08253, P08688, P09353, P0DQV9, P13943, P18670, P19667, P21692, P22894, P28053, P30617, P33434, P33436, P39900, P42664, P49329, P79227, P81180, P83886, P86626, Q03380, Q39487, Q43418, Q6F495, Q6Y4Q5
Diamond homologs: A4KX75, D0EM77, G5EBU3, O04529, O18733, O18767, O18927, O23507, O55123, O55761, O60882, O62806, O77656, P03956, P03957, P07152, P08253, P08254, P09237, P09238, P13943, P14780, P21692, P22757, P23097, P28862, P28863, P29136, P33434, P33435, P33436, P34960, P39900, P41245, P41246, P45452, P50280, P50281, P50282, P50757
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MMP12 | “down-regulates quantity by destabilization” | F12 | cleavage |
| MMP12 | “down-regulates quantity by destabilization” | FGA | cleavage |
| MMP12 | up-regulates | ECM_disassembly | |
| MMP12 | down-regulates | ECM |
Disease & clinical
Clinical variants and AI predictions
ClinVar
39 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 29 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
955 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:102864141:CTT:C | donor_loss | 1.0000 |
| 11:102864142:TTAC:T | donor_loss | 1.0000 |
| 11:102864143:TA:T | donor_loss | 1.0000 |
| 11:102864144:A:AC | donor_gain | 1.0000 |
| 11:102864144:ACTG:A | donor_loss | 1.0000 |
| 11:102864145:C:CT | donor_gain | 1.0000 |
| 11:102864145:CT:C | donor_gain | 1.0000 |
| 11:102864145:CTG:C | donor_gain | 1.0000 |
| 11:102864145:CTGT:C | donor_gain | 1.0000 |
| 11:102864145:CTGTT:C | donor_gain | 1.0000 |
| 11:102864248:CATAC:C | acceptor_gain | 1.0000 |
| 11:102864250:TAC:T | acceptor_gain | 1.0000 |
| 11:102864252:CCTG:C | acceptor_loss | 1.0000 |
| 11:102864253:CTGA:C | acceptor_loss | 1.0000 |
| 11:102866310:ATTAC:A | donor_loss | 1.0000 |
| 11:102866311:TTA:T | donor_loss | 1.0000 |
| 11:102866312:TACC:T | donor_loss | 1.0000 |
| 11:102866313:A:AG | donor_loss | 1.0000 |
| 11:102866314:C:A | donor_loss | 1.0000 |
| 11:102866386:C:CT | acceptor_gain | 1.0000 |
| 11:102867264:TCCTA:T | donor_loss | 1.0000 |
| 11:102867265:CCTAC:C | donor_loss | 1.0000 |
| 11:102867266:CTA:C | donor_loss | 1.0000 |
| 11:102867267:TA:T | donor_loss | 1.0000 |
| 11:102867268:A:AC | donor_gain | 1.0000 |
| 11:102867269:C:CC | donor_gain | 1.0000 |
| 11:102867269:C:T | donor_loss | 1.0000 |
| 11:102867269:CCTGT:C | donor_gain | 1.0000 |
| 11:102867389:GTCTC:G | acceptor_gain | 1.0000 |
| 11:102867391:CTC:C | acceptor_gain | 1.0000 |
AlphaMissense
3154 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:102865837:C:G | A382P | 0.990 |
| 11:102871814:A:C | F163L | 0.988 |
| 11:102871814:A:T | F163L | 0.988 |
| 11:102871816:A:G | F163L | 0.988 |
| 11:102871697:A:C | F174L | 0.986 |
| 11:102871697:A:T | F174L | 0.986 |
| 11:102871699:A:G | F174L | 0.986 |
| 11:102866360:C:G | A334P | 0.983 |
| 11:102871882:A:G | W141R | 0.980 |
| 11:102871882:A:T | W141R | 0.980 |
| 11:102864167:C:G | A431P | 0.978 |
| 11:102867313:C:G | A290P | 0.977 |
| 11:102865834:C:G | A383P | 0.975 |
| 11:102865833:G:T | A383D | 0.974 |
| 11:102871856:G:C | F149L | 0.974 |
| 11:102871856:G:T | F149L | 0.974 |
| 11:102871858:A:G | F149L | 0.974 |
| 11:102868049:C:G | A216P | 0.971 |
| 11:102873011:C:A | Q68H | 0.971 |
| 11:102873011:C:G | Q68H | 0.971 |
| 11:102868011:A:C | H228Q | 0.970 |
| 11:102868011:A:T | H228Q | 0.970 |
| 11:102871664:A:C | F185L | 0.970 |
| 11:102871664:A:T | F185L | 0.970 |
| 11:102871666:A:G | F185L | 0.970 |
| 11:102867984:G:C | F237L | 0.968 |
| 11:102867984:G:T | F237L | 0.968 |
| 11:102867986:A:G | F237L | 0.968 |
| 11:102871698:A:C | F174C | 0.968 |
| 11:102867995:C:G | A234P | 0.967 |
dbSNP variants (sampled 300 via entrez): RS1000028164 (11:102864555 G>A,T), RS1000416970 (11:102871752 A>G,T), RS1000927175 (11:102871364 A>G), RS1001679108 (11:102872568 C>G,T), RS1002113699 (11:102867619 T>C), RS1002420340 (11:102874505 T>A), RS1003627380 (11:102862368 T>C), RS1003686487 (11:102876210 T>C), RS1003687414 (11:102875800 T>A), RS1003714830 (11:102869477 G>A), RS1003788332 (11:102869110 A>G), RS1005747831 (11:102872401 C>T), RS1006003690 (11:102867225 A>T), RS1006083099 (11:102873632 C>G), RS1007604389 (11:102868967 C>T)
Disease associations
OMIM: gene MIM:601046 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
25 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001529_3 | Alzheimer’s disease | 1.000000e-06 |
| GCST002350_5 | Chronic obstructive pulmonary disease (severe) | 3.000000e-09 |
| GCST002525_18 | Local histogram emphysema pattern | 2.000000e-07 |
| GCST002525_21 | Local histogram emphysema pattern | 7.000000e-09 |
| GCST002525_4 | Local histogram emphysema pattern | 1.000000e-08 |
| GCST002525_7 | Local histogram emphysema pattern | 3.000000e-09 |
| GCST002665_4 | Cerebrospinal fluid levels of Alzheimer’s disease-related proteins | 2.000000e-44 |
| GCST002945_19 | Emphysema imaging phenotypes | 5.000000e-07 |
| GCST002945_36 | Emphysema imaging phenotypes | 1.000000e-07 |
| GCST002945_43 | Emphysema imaging phenotypes | 4.000000e-07 |
| GCST002945_44 | Emphysema imaging phenotypes | 6.000000e-06 |
| GCST002945_45 | Emphysema imaging phenotypes | 7.000000e-07 |
| GCST003262_36 | Post bronchodilator FEV1 | 3.000000e-06 |
| GCST003262_654 | Post bronchodilator FEV1 | 1.000000e-06 |
| GCST003262_775 | Post bronchodilator FEV1 | 1.000000e-06 |
| GCST003262_809 | Post bronchodilator FEV1 | 1.000000e-06 |
| GCST003264_384 | Post bronchodilator FEV1/FVC ratio | 6.000000e-10 |
| GCST003264_4 | Post bronchodilator FEV1/FVC ratio | 5.000000e-10 |
| GCST003264_6 | Post bronchodilator FEV1/FVC ratio | 8.000000e-10 |
| GCST003264_662 | Post bronchodilator FEV1/FVC ratio | 8.000000e-07 |
| GCST003265_456 | Post bronchodilator FEV1/FVC ratio in COPD | 4.000000e-06 |
| GCST003265_459 | Post bronchodilator FEV1/FVC ratio in COPD | 4.000000e-06 |
| GCST006039_3 | Peanut allergy | 3.000000e-07 |
| GCST006585_1814 | Blood protein levels | 5.000000e-77 |
| GCST009731_45 | Blood protein levels in cardiovascular risk | 3.000000e-171 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005850 | emphysema pattern measurement |
| EFO:0004744 | matrix metalloproteinase measurement |
| EFO:0006514 | Alzheimer’s disease biomarker measurement |
| EFO:0007626 | emphysema imaging measurement |
| EFO:0004314 | forced expiratory volume |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0007017 | peanut allergy measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4393 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
7 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 146,774 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL734 | ACETOHYDROXAMIC ACID | 4 | 7,079 |
| CHEMBL279785 | MARIMASTAT | 3 | 29,447 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL151 | LUTEOLIN | 2 | 23,523 |
| CHEMBL19611 | ILOMASTAT | 2 | 12,065 |
| CHEMBL1233524 | MK-3281 | 1 | 66 |
| CHEMBL4859268 | AGG-523 | 1 | 35 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — M10: Matrix metallopeptidase
Most potent curated ligand interactions (9 total), top 9:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| BAY-7598 | Binding | 11.4 | pKd |
| compound 20 [PMID: 22153340] | Inhibition | 10.0 | pIC50 |
| ilomastat | Inhibition | 9.34 | pIC50 |
| AZD6605 | Inhibition | 9.22 | pIC50 |
| RXP470.1 | Inhibition | 8.62 | pKi |
| AZD1236 | Inhibition | 8.21 | pIC50 |
| compound 1 [PMID: 24900526] | Inhibition | 6.54 | pIC50 |
| TP0556351 | Inhibition | 5.86 | pIC50 |
| compound 5 [PMID: 24900526] | Inhibition | 4.89 | pIC50 |
Binding affinities (BindingDB)
165 measured of 273 human assays (274 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| (2S)-3-methyl-2-{[12-({[2-(thiophen-2-yl)ethyl]carbamoyl}amino)-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-]sulfonamido}butanoic acid | IC50 | 1.1 nM | |
| (2S)-2-({4-[4-(1-benzofuran-2-amido)phenyl]benzene}sulfonamido)-3-methylbutanoic acid | IC50 | 1.3 nM | |
| (2S)-2-({12-[(cyclopentylcarbamoyl)amino]-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-}sulfonamido)-3-methylbutanoic acid | IC50 | 2.1 nM | |
| (2S)-3-methyl-2-({12-[(thiophen-3-ylcarbamoyl)amino]-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-}sulfonamido)butanoic acid | IC50 | 3.3 nM | |
| (2S)-3-methyl-2-({12-[(propoxycarbonyl)amino]-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-}sulfonamido)butanoic acid | IC50 | 10 nM | |
| (2S)-3-methyl-2-[(12-{[(2-methylpropoxy)carbonyl]amino}-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-)sulfonamido]butanoic acid | IC50 | 10 nM | |
| (2S)-2-[(12-{[(2-fluoroethoxy)carbonyl]amino}-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene-5-)sulfonamido]-3-methylbutanoic acid | IC50 | 10 nM | |
| (4S)-5-[3-(carboxymethyl)piperidin-1-yl]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acid | KI | 12 nM | US-8691753 |
| (4S)-5-[3-(carboxymethyl)anilino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acid | KI | 18.1 nM | US-8691753 |
| (4S)-5-[[(2S)-1-amino-3-hydroxy-1-oxopropan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acid | KI | 31 nM | US-8691753 |
| (4S)-5-amino-4-[[(2S)-3-carboxy-2-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]propanoyl]amino]-5-oxopentanoic acid | KI | 39 nM | US-8691753 |
| (4S)-5-[[(2S)-1,5-diamino-1,5-dioxopentan-2-yl]amino]-5-oxo-4-[3-[3-(4-phenylphenyl)-1,2-oxazol-5-yl]propanoylamino]pentanoic acid | KI | 39.3 nM | US-8691753 |
| (4S)-5-[[(2S)-1,5-diamino-1,5-dioxopentan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acid | KI | 45 nM | US-8691753 |
| Inhibitor, 18 | KI | 47 nM | |
| (4S)-5-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acid | KI | 49 nM | US-8691753 |
| (3S)-4-amino-3-[[(2S)-3-carboxy-2-[3-[3-(4-phenylphenyl)-1,2-oxazol-5-yl]propanoylamino]propanoyl]amino]-4-oxobutanoic acid | KI | 52 nM | US-8691753 |
| (4S)-5-[[(2S)-1-amino-3-carboxy-1-oxopropan-2-yl]amino]-5-oxo-4-[3-[4-(4-phenylphenyl)phenyl]propanoylamino]pentanoic acid | KI | 55 nM | US-8691753 |
| 5-[2-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[3-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-2-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[3-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-4-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[[4-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[[2-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| [3-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]phenyl]methyl (2S)-2-amino-3-methylbutanoate | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[3-[4-[[4-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-4-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[[3-(hydroxymethyl)phenyl]methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 3-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]-N-methylbenzamide | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(2-methoxy-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(2-ethoxy-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(2-propan-2-yloxy-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]pyridine-3-carboxamide | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[2-methyl-4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(2-methyl-4-pyridinyl)oxymethyl]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[6-methyl-4-[4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[3-chloro-4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[3-fluoro-4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[3-[4-[[2-(hydroxymethyl)-4-pyridinyl]methoxy]phenyl]sulfanyl-4-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(2-methyl-4-pyridinyl)methylamino]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[methyl-[(2-methyl-4-pyridinyl)methyl]amino]phenyl]sulfanyl-3-pyridinyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 4-[[4-[[3-(2,5-dioxoimidazolidin-4-yl)-4-pyridinyl]sulfanyl]phenoxy]methyl]pyridine-2-carboxamide | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[2-[4-[(3-methylphenyl)methoxy]phenyl]sulfanylphenyl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-1-oxidopyridin-1-ium-3-yl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[1-methyl-4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanylpyrazol-5-yl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[3-methyl-5-[4-[(3-methylphenyl)methoxy]phenyl]sulfanylimidazol-4-yl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[4-[4-[(3-methylphenyl)methoxy]phenyl]sulfanyl-1,3-oxazol-5-yl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| 5-[1-methyl-5-[4-[(2-methyl-4-pyridinyl)methoxy]phenyl]sulfanylimidazol-4-yl]imidazolidine-2,4-dione | IC50 | 55 nM | US-20250115590: MATRIX METALLOPROTEINASE (MMP) INHIBITORS AND METHODS OF USE THEREOF |
| Inhibitor, 17 | KI | 57 nM |
ChEMBL bioactivities
710 potent at pChembl≥5 of 792 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.07 | IC50 | 0.085 | nM | BAY-7598 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL1935285 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL1935286 |
| 9.72 | Ki | 0.19 | nM | CHEMBL507420 |
| 9.72 | Ki | 0.19 | nM | CHEMBL5191016 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL573715 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL179288 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL1935287 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL1935288 |
| 9.62 | IC50 | 0.24 | nM | CHEMBL111856 |
| 9.62 | Ki | 0.24 | nM | CHEMBL507420 |
| 9.59 | Ki | 0.26 | nM | CHEMBL507420 |
| 9.59 | Ki | 0.26 | nM | CHEMBL4581500 |
| 9.55 | Ki | 0.28 | nM | CHEMBL2316257 |
| 9.52 | Ki | 0.3 | nM | CHEMBL3675605 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL1935304 |
| 9.43 | IC50 | 0.368 | nM | CHEMBL5288452 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL561312 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL1935284 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL1935290 |
| 9.34 | IC50 | 0.46 | nM | ILOMASTAT |
| 9.28 | Ki | 0.52 | nM | ILOMASTAT |
| 9.25 | IC50 | 0.566 | nM | CHEMBL5280430 |
| 9.21 | Ki | 0.61 | nM | CHEMBL115727 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL1935280 |
| 9.07 | IC50 | 0.85 | nM | CHEMBL573715 |
| 9.05 | Ki | 0.9 | nM | CHEMBL4435285 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL523683 |
| 9.05 | IC50 | 0.89 | nM | CHEMBL573715 |
| 9.03 | IC50 | 0.93 | nM | CHEMBL2337131 |
| 9.02 | IC50 | 0.95 | nM | CHEMBL366111 |
| 9.00 | Ki | 1 | nM | CHEMBL2385483 |
| 9.00 | Ki | 1 | nM | CHEMBL3133269 |
| 9.00 | Ki | 1 | nM | CHEMBL4520279 |
| 9.00 | Ki | 1 | nM | CHEMBL4764575 |
| 9.00 | IC50 | 1 | nM | ILOMASTAT |
| 9.00 | IC50 | 1 | nM | CHEMBL1935291 |
| 8.98 | Ki | 1.05 | nM | CHEMBL3675573 |
| 8.96 | Ki | 1.1 | nM | CHEMBL4751015 |
| 8.96 | IC50 | 1.1 | nM | CHEMBL493356 |
| 8.92 | Ki | 1.2 | nM | CHEMBL4739996 |
| 8.92 | IC50 | 1.2 | nM | CHEMBL5199189 |
| 8.92 | IC50 | 1.2 | nM | CHEMBL1935292 |
| 8.89 | IC50 | 1.3 | nM | CHEMBL5183245 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL550038 |
| 8.80 | IC50 | 1.6 | nM | CHEMBL1935300 |
| 8.79 | Ki | 1.63 | nM | CHEMBL3675563 |
| 8.77 | IC50 | 1.7 | nM | CHEMBL77163 |
| 8.77 | IC50 | 1.698 | nM | CHEMBL77163 |
| 8.74 | IC50 | 1.8 | nM | CHEMBL3958969 |
PubChem BioAssay actives
643 with measured affinity, of 1139 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S)-2-[[8-(5-chlorofuran-2-yl)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0001 | uM |
| (2S)-3-methyl-2-[[8-(5-methylfuran-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0001 | uM |
| (2R)-N-hydroxy-3-methyl-2-[(4-phenylphenyl)sulfonyl-propan-2-yloxyamino]butanamide | 440420: Inhibition of autoactivated human pro-MMP12 after 4 hrs by fluorimetry | ic50 | 0.0002 | uM |
| (4R)-5-amino-4-[[(2R)-2-[[(2R)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-4-carboxybutanoyl]amino]-5-oxopentanoic acid | 1863959: Inhibition of human MMP-12 expressed in Escherichia coli BL21(DE3) using Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 as substrate preincubated for 30 mins followed by susbstrate addition by photon-counter spectrophotometer analysis | ki | 0.0002 | uM |
| N-hydroxy-2-[2-[4-(4-methoxyphenoxy)phenyl]sulfonylphenyl]acetamide | 440420: Inhibition of autoactivated human pro-MMP12 after 4 hrs by fluorimetry | ic50 | 0.0002 | uM |
| (4S)-5-amino-4-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-4-carboxybutanoyl]amino]-5-oxopentanoic acid | 349385: Inhibition of MMP12 | ki | 0.0002 | uM |
| (2S)-3-methyl-2-[(8-thiophen-2-yldibenzofuran-3-yl)sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0002 | uM |
| (2S)-3-methyl-2-[[8-(5-methylthiophen-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0002 | uM |
| (4R)-5-amino-4-[[(2S)-2-[[2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]-4-carboxybutanoyl]amino]-5-oxopentanoic acid | 1799769: Enzyme Assay from Article 10.1074/jbc.M112.380782: “Simple Pseudo-dipeptides with a P2’ Glutamate: A NOVEL INHIBITOR FAMILY OF MATRIX METALLOPROTEASES AND OTHER METZINCINS.” | ki | 0.0002 | uM |
| 4-[[4-(4-fluorophenoxy)phenyl]sulfonylamino]-N-hydroxyoxane-4-carboxamide | 109242: Inhibition of matrix metalloprotease-12 | ic50 | 0.0002 | uM |
| (4S)-5-amino-4-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]propanoyl]amino]-5-oxopentanoic acid | 1524641: Inhibition of human MMP12 | ki | 0.0003 | uM |
| (2S)-3-methyl-2-[[8-[5-(oxolan-3-yl)-1,2,4-oxadiazol-3-yl]dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0003 | uM |
| [(2S)-3-[[(2S)-1-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-2-[[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]methyl]-3-oxopropyl]-(4-bromophenyl)phosphinic acid | 1524641: Inhibition of human MMP12 | ki | 0.0003 | uM |
| (2S)-3-methyl-2-[[4-[5-(5-methylthiophen-2-yl)-1,2-oxazol-3-yl]phenyl]sulfonylamino]butanoic acid | 1937792: Inhibition of MMP12 (unknown origin) | ic50 | 0.0004 | uM |
| (2S)-2-[[8-(methoxycarbonylamino)dibenzothiophen-3-yl]sulfonylamino]-3-methylbutanoic acid | 427755: Inhibition of human recombinant MMP12 | ic50 | 0.0004 | uM |
| (2S)-2-[[8-(furan-3-yl)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0004 | uM |
| (2S)-3-methyl-2-[[8-(1H-pyrrol-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0004 | uM |
| (2R)-N’-hydroxy-N-[(2S)-3-(1H-indol-3-yl)-1-(methylamino)-1-oxopropan-2-yl]-2-(2-methylpropyl)butanediamide | 1912254: Inhibition of recombinant human MMP12 using MOCAc-Pro-Leu-Gly-Leu-A2pr(Dnp)-Ala-Arg-NH2 as substrate preincubated for 15 mins followed by substrate addition by fluroscence based assay | ic50 | 0.0005 | uM |
| (2S)-2-[[4-[5-(5-ethylthiophen-2-yl)-1,2-oxazol-3-yl]phenyl]sulfonylamino]-3-methylbutanoic acid | 1937792: Inhibition of MMP12 (unknown origin) | ic50 | 0.0006 | uM |
| (2S)-3-methyl-2-[[8-[3-(trifluoromethyl)pyrazol-1-yl]dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0007 | uM |
| (2E)-2-[(2E,4E)-5-[3-[6-[3-[2-[2-[3-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(4-bromophenyl)-hydroxyphosphoryl]methyl]-3-[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]propanoyl]amino]propanoyl]amino]-4-carboxybutanoyl]amino]propoxy]ethoxy]ethoxy]propylamino]-6-oxohexyl]-1,1-dimethyl-6,8-disulfobenzo[e]indol-3-ium-2-yl]penta-2,4-dienylidene]-3-ethyl-1,1-dimethyl-8-sulfobenzo[e]indole-6-sulfonate | 1524641: Inhibition of human MMP12 | ki | 0.0009 | uM |
| (2S)-3-methyl-2-[[8-(thiophen-3-ylcarbamoylamino)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 1798893: MMP Inhibition Assay from Article 10.1021/jm900093d: “A selective matrix metalloprotease 12 inhibitor for potential treatment of chronic obstructive pulmonary disease (COPD): discovery of (S)-2-(8-(methoxycarbonylamino)dibenzo[b,d]furan-3-sulfonamido)-3-methylbutanoic acid (MMP408).” | ic50 | 0.0009 | uM |
| 2-(2,5-dichlorophenyl)sulfonyl-N-hydroxy-6-phenoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 731523: Inhibition of MMP12 (unknown origin) | ic50 | 0.0009 | uM |
| (3S,4R)-4-[4-[(2,4-dichlorophenyl)methoxy]phenyl]sulfonyl-N,3-dihydroxyoxane-3-carboxamide | 240999: Inhibition of matrix metalloprotease 12 | ic50 | 0.0009 | uM |
| (6S,7R,10S)-10-N-[(2S)-5-(diaminomethylideneamino)-1-(methylamino)-1-oxopentan-2-yl]-6-N-hydroxy-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-6,10-dicarboxamide | 1701081: Inhibition of human recombinant MMP12 using Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 substrate by spectrophotometry | ki | 0.0010 | uM |
| [(2S)-3-[[(2S)-1-[[(2S)-1-[3-[2-[2-[3-(2,3-ditritiopropanoylamino)propoxy]ethoxy]ethoxy]propylamino]-3-hydroxy-1-oxopropan-2-yl]amino]-1-oxobutan-2-yl]amino]-3-oxo-2-[[3-[4-[3-(trifluoromethyl)diazirin-3-yl]phenyl]-1,2-oxazol-5-yl]methyl]propyl]-phenylphosphinic acid | 1524649: Inhibition of human MMP12 by photoaffinity probe based assay | ki | 0.0010 | uM |
| (2R,3R)-1-[4-[(2-chloro-4-fluorophenyl)methoxy]phenyl]sulfonyl-N,3-dihydroxy-3-methylpiperidine-2-carboxamide | 1445582: Inhibition of human MMP12 using Mca-PQGL-(3-[2, 4-dinitrophenyl]-L-2, 3-diaminopropionyl)-AR-OH as substrate after 2 to 4 hrs by fluorescence assay | ic50 | 0.0010 | uM |
| (2S)-3-methyl-2-[[8-(1,3-thiazol-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0010 | uM |
| (2S)-3-methyl-2-[[8-(1H-pyrazol-5-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0010 | uM |
| (2S)-N-hydroxy-1-[2-(4-methoxyphenyl)ethylsulfonyl]pyrrolidine-2-carboxamide | 748347: Inhibition of MMP12 (unknown origin)-mediated Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 by fluorimetric assay | ki | 0.0010 | uM |
| (6S,7R,10S)-6-(hydroxycarbamoyl)-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carboxylic acid | 1701081: Inhibition of human recombinant MMP12 using Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 substrate by spectrophotometry | ki | 0.0011 | uM |
| (2S)-3-methyl-2-[[8-(2-thiophen-2-ylethylcarbamoylamino)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 1798893: MMP Inhibition Assay from Article 10.1021/jm900093d: “A selective matrix metalloprotease 12 inhibitor for potential treatment of chronic obstructive pulmonary disease (COPD): discovery of (S)-2-(8-(methoxycarbonylamino)dibenzo[b,d]furan-3-sulfonamido)-3-methylbutanoic acid (MMP408).” | ic50 | 0.0011 | uM |
| (2S)-2-[[(6S,7R,10S)-6-(hydroxycarbamoyl)-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carbonyl]amino]pentanedioic acid | 1701081: Inhibition of human recombinant MMP12 using Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 substrate by spectrophotometry | ki | 0.0012 | uM |
| N-hydroxy-4-[4-[4-(4-methoxyphenyl)triazol-1-yl]phenyl]sulfonyloxane-4-carboxamide | 1863880: Inhibition of MMP-12 (unknown origin) | ic50 | 0.0012 | uM |
| (2S)-3-methyl-2-[[8-(5-methyl-1,3-thiazol-2-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0012 | uM |
| (3S)-4-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-(2-amino-2-oxoethyl)pyrrolidin-1-yl]-4-methyl-1-oxopentan-2-yl]-methylamino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-3-[[(2S)-4-amino-4-oxo-2-[4-[(4-phenoxyphenyl)sulfonylamino]butanoylamino]butanoyl]amino]-4-oxobutanoic acid | 1912254: Inhibition of recombinant human MMP12 using MOCAc-Pro-Leu-Gly-Leu-A2pr(Dnp)-Ala-Arg-NH2 as substrate preincubated for 15 mins followed by substrate addition by fluroscence based assay | ic50 | 0.0013 | uM |
| (2S)-3-methyl-2-[[8-(2-oxo-1,3-oxazolidin-3-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 427755: Inhibition of human recombinant MMP12 | ic50 | 0.0014 | uM |
| 3-methyl-2-[[8-(2-oxo-1,3-oxazolidin-3-yl)dibenzofuran-3-yl]sulfonylamino]butanoic acid | 1799769: Enzyme Assay from Article 10.1074/jbc.M112.380782: “Simple Pseudo-dipeptides with a P2’ Glutamate: A NOVEL INHIBITOR FAMILY OF MATRIX METALLOPROTEASES AND OTHER METZINCINS.” | ic50 | 0.0014 | uM |
| (2S)-2-[[8-(5-cyclopropyl-1,2,4-oxadiazol-3-yl)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0016 | uM |
| (4-benzylphenyl)methyl-[4-(4-chlorophenyl)-2-[[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]carbamoyl]butyl]phosphinic acid | 109241: Inhibition of matrix metalloprotease-12 | ic50 | 0.0017 | uM |
| N-[[3-[3-[2-(hydroxycarbamoyl)piperidin-1-yl]sulfonylpropoxy]phenyl]methyl]-4-oxo-3H-quinazoline-2-carboxamide | 1328782: Inhibition of recombinant human AMPA-activated MMP12 using Cy3-PLGLK(Cy5Q)AR-NH2 as substrate measured after 40 mins by spectrofluorimetric method | ic50 | 0.0018 | uM |
| (2R)-2-[[8-(methoxycarbonylamino)dibenzothiophen-3-yl]sulfonylamino]-3-methylbutanoic acid | 427755: Inhibition of human recombinant MMP12 | ic50 | 0.0018 | uM |
| (3S)-4-[[(2S)-1-[[(2S)-1-[[(2S)-1-[(2S)-2-(2-amino-2-oxoethyl)pyrrolidin-1-yl]-4-methylsulfanyl-1-oxobutan-2-yl]-methylamino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-3-[[(2S)-4-amino-4-oxo-2-[4-[(4-phenoxyphenyl)sulfonylamino]butanoylamino]butanoyl]amino]-4-oxobutanoic acid | 1912254: Inhibition of recombinant human MMP12 using MOCAc-Pro-Leu-Gly-Leu-A2pr(Dnp)-Ala-Arg-NH2 as substrate preincubated for 15 mins followed by substrate addition by fluroscence based assay | ic50 | 0.0019 | uM |
| (4R)-5-amino-4-[[(2S)-4-carboxy-2-[3-[4-(4-phenylthiophen-2-yl)phenyl]propanoylamino]butanoyl]amino]-5-oxopentanoic acid | 1799769: Enzyme Assay from Article 10.1074/jbc.M112.380782: “Simple Pseudo-dipeptides with a P2’ Glutamate: A NOVEL INHIBITOR FAMILY OF MATRIX METALLOPROTEASES AND OTHER METZINCINS.” | ki | 0.0019 | uM |
| (2S)-2-[[8-[5-(methoxymethyl)-1,2,4-oxadiazol-3-yl]dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid | 638695: Inhibition of human MMP-12 | ic50 | 0.0019 | uM |
| (2R)-N-[(2S)-1-[[(2S)-1,6-diamino-1-oxohexan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]-N’-hydroxy-2-(2-methylpropyl)butanediamide | 1172327: Inhibition of human recombinant MMP12 catalytic domain Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 fluorogenic substrate | ic50 | 0.0020 | uM |
| N-hydroxy-2-[(4-phenylphenyl)sulfonylamino]acetamide | 748347: Inhibition of MMP12 (unknown origin)-mediated Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 by fluorimetric assay | ki | 0.0020 | uM |
| (2S)-2-[[8-(methoxycarbonylamino)dibenzofuran-3-yl]sulfonylamino]-3-methylbutanoic acid | 1798893: MMP Inhibition Assay from Article 10.1021/jm900093d: “A selective matrix metalloprotease 12 inhibitor for potential treatment of chronic obstructive pulmonary disease (COPD): discovery of (S)-2-(8-(methoxycarbonylamino)dibenzo[b,d]furan-3-sulfonamido)-3-methylbutanoic acid (MMP408).” | ic50 | 0.0020 | uM |
| (2R)-N-hydroxy-1-[2-(4-phenylphenyl)ethylsulfonyl]pyrrolidine-2-carboxamide | 748347: Inhibition of MMP12 (unknown origin)-mediated Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2 by fluorimetric assay | ki | 0.0020 | uM |
| (5S)-5-[[4-(4-ethoxyphenoxy)piperidin-1-yl]sulfonylmethyl]-5-methylimidazolidine-2,4-dione | 761928: Inhibition of MMP-12 (unknown origin) by fluorescence assay | ic50 | 0.0020 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Nickel | affects expression, increases expression, decreases reaction | 2 |
| Tetrachlorodibenzodioxin | increases expression, decreases reaction | 2 |
| Cyclosporine | decreases methylation, increases expression | 2 |
| Raloxifene Hydrochloride | affects expression, affects cotreatment, decreases expression | 2 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| methyleugenol | increases expression | 1 |
| acetohydroxamic acid | decreases activity, affects binding | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| trichostatin A | affects expression, decreases reaction | 1 |
| hydroxyhydroquinone | increases expression | 1 |
| trimellitic anhydride | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| stearic acid | increases expression | 1 |
| perfluorodecanoic acid | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, decreases expression | 1 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | decreases reaction, increases activity, increases expression | 1 |
| 3’-methoxy-4’-nitroflavone | decreases reaction, increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | increases expression, decreases reaction, increases activity | 1 |
| pyrazolanthrone | decreases reaction, increases activity, increases expression | 1 |
| lipopolysaccharide, E coli O55-B5 | affects cotreatment, increases expression, increases reaction | 1 |
| abrine | increases expression | 1 |
| fenbuconazole | increases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Wortmannin | decreases reaction, increases activity, increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Acrolein | increases secretion | 1 |
| Azathioprine | decreases expression | 1 |
ChEMBL screening assays
191 unique, capped per target: 183 binding, 8 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1002878 | Binding | Binding affinity to MMP12 assessed as enzyme mediated cleavage of compound by measuring increase in fluorescence after 16 hrs by HPLC-MS | Photodynamic molecular beacon triggered by fibroblast activation protein on cancer-associated fibroblasts for diagnosis and treatment of epithelial cancers. — J Med Chem |
| CHEMBL2211414 | ADMET | Prodrug conversion assessed as recombinant human MMP-12 mediated compound conversion to 2-((S)-2-((S)-1-(benzyloxycarbonyl)pyrrolidine-2-carboxamido)-N-(biphenyl-4-ylsulfonyl)-4-methylpentanamido)acetic acid by HPLC analysis | Target-Activated Prodrugs (TAPs) for the Autoregulated Inhibition of MMP12. — ACS Med Chem Lett |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B8KM | Abcam HCT 116 MMP12 KO | Cancer cell line | Male |
| CVCL_B8YY | Abcam MCF-7 MMP12 KO | Cancer cell line | Female |
| CVCL_B9MV | Abcam A-549 MMP12 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.