MMP16
gene geneOn this page
Also known as MT3-MMPDKFZp761D112
Summary
MMP16 (matrix metallopeptidase 16, HGNC:7162) is a protein-coding gene on chromosome 8q21.3, encoding Matrix metalloproteinase-16 (P51512). Endopeptidase that degrades various components of the extracellular matrix, such as collagen type III and fibronectin.
Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP’s are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. The encoded protein activates MMP2 by cleavage. This gene was once referred to as MT-MMP2, but was renamed as MT-MMP3 or MMP16.
Source: NCBI Gene 4325 — RefSeq curated summary.
At a glance
- GWAS associations: 29
- Clinical variants (ClinVar): 65 total
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_005941
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7162 |
| Approved symbol | MMP16 |
| Name | matrix metallopeptidase 16 |
| Location | 8q21.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MT3-MMP, DKFZp761D112 |
| Ensembl gene | ENSG00000156103 |
| Ensembl biotype | protein_coding |
| OMIM | 602262 |
| Entrez | 4325 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 2 protein_coding, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000286614, ENST00000520568, ENST00000522726, ENST00000544227
RefSeq mRNA: 1 — MANE Select: NM_005941
NM_005941
CCDS: CCDS6246
Canonical transcript exons
ENST00000286614 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001088402 | 88046669 | 88046784 |
| ENSE00001088408 | 88056128 | 88056278 |
| ENSE00001260017 | 88032011 | 88041795 |
| ENSE00001399203 | 88327075 | 88327483 |
| ENSE00003486805 | 88186476 | 88186598 |
| ENSE00003495602 | 88197158 | 88197306 |
| ENSE00003555699 | 88118700 | 88118861 |
| ENSE00003607975 | 88116507 | 88116718 |
| ENSE00003624552 | 88167669 | 88167973 |
| ENSE00003694472 | 88074605 | 88074743 |
Expression profiles
Bgee: expression breadth ubiquitous, 206 present calls, max score 93.48.
FANTOM5 (CAGE): breadth broad, TPM avg 3.2630 / max 65.6523, expressed in 881 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 93844 | 1.1805 | 482 |
| 93843 | 0.9571 | 463 |
| 93842 | 0.5846 | 315 |
| 93841 | 0.3298 | 173 |
| 93845 | 0.2110 | 101 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 93.48 | gold quality |
| tibia | UBERON:0000979 | 92.70 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 90.61 | gold quality |
| cartilage tissue | UBERON:0002418 | 90.34 | gold quality |
| postcentral gyrus | UBERON:0002581 | 89.04 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 88.20 | gold quality |
| parietal lobe | UBERON:0001872 | 88.13 | gold quality |
| entorhinal cortex | UBERON:0002728 | 86.86 | gold quality |
| cortical plate | UBERON:0005343 | 86.81 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 86.76 | gold quality |
| stromal cell of endometrium | CL:0002255 | 86.19 | gold quality |
| ventricular zone | UBERON:0003053 | 82.55 | gold quality |
| primary visual cortex | UBERON:0002436 | 82.17 | gold quality |
| occipital lobe | UBERON:0002021 | 82.11 | gold quality |
| cerebellar vermis | UBERON:0004720 | 81.98 | gold quality |
| ganglionic eminence | UBERON:0004023 | 81.46 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.41 | gold quality |
| mammary duct | UBERON:0001765 | 80.75 | gold quality |
| corpus callosum | UBERON:0002336 | 80.72 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 79.22 | gold quality |
| medial globus pallidus | UBERON:0002477 | 78.94 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 78.83 | gold quality |
| buccal mucosa cell | CL:0002336 | 78.49 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 78.24 | gold quality |
| skin of hip | UBERON:0001554 | 77.67 | gold quality |
| globus pallidus | UBERON:0001875 | 77.63 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 77.19 | gold quality |
| temporal lobe | UBERON:0001871 | 77.13 | gold quality |
| adrenal tissue | UBERON:0018303 | 76.97 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 76.28 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 2311.31 |
| E-HCAD-35 | yes | 91.02 |
| E-HCAD-25 | yes | 27.90 |
| E-GEOD-84465 | yes | 25.55 |
| E-ENAD-27 | yes | 8.15 |
| E-ANND-3 | yes | 6.08 |
| E-GEOD-93593 | yes | 5.10 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
290 targeting MMP16, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
Literature-anchored findings (GeneRIF, showing 35)
- down-regulation of most MT-MMPs is typical for prostate carcinoma; seems to occur mainly in epithelial cells (PMID:12661033)
- Results report the structure of the catalytic domain (cd) of the membrane-type matrix metalloproteinase MT3-MMP/MMP-16 in complex with the hydroxamic acid inhibitor batimastat. (PMID:14741217)
- MT3-MMP is not only important in matrix degradation but also may affect the function of focal adhesions through FAK cleavage. (PMID:15044209)
- Type-3 metalloproteinases, are identified as the triggering agents that independently confer cancer cells with the ability to proteolytically efface the BM scaffolding, initiate the assembly of invasive pseudopodia, and propagate transmigration. (PMID:16983145)
- Chondroitin-4-sulfate, which is expressed on tumour cell surface, can function to bind to pro-MMP-2 and facilitate its activation by MT3-MMP-expressing tumour cells to enhance invasion and metastasis (PMID:17217338)
- We have demonstrated the expression of MT3-MMP in hepatocellular carcinoma tissues (HCC) and that the expression in HCC significantly correlates with capsular invasion. (PMID:17419254)
- MMP16 polymorphisms appear to influence not only the pulmonary expression and function of MMP16 but also the risk of bronchopulmonary dysplasia (PMID:18784838)
- miR-146b is involved in glioma cell migration and invasion by targeting MMP16; implicating miR-146b as a metastasis-inhibiting miRNA in glioma (PMID:19265686)
- Matrix metalloproteinase 16 (MMP16) was a downstream target of miR-146b-5p. (PMID:21823013)
- MT3-MMP is a matrix-dependent modifier of the invasive tumor cell functions during melanoma progression (PMID:22164270)
- Data show that MMP16 is regulated by miR-146a in spontaneously differentiated Caco-2 cells. (PMID:22348245)
- The overexpression of miR-146b-5p in glioblastoma cell lines led to MMP16 mRNA silencing, MMP2 inactivation, and the inhibition of tumour cell migration and invasion. (PMID:23796692)
- E2F1 acts as a transcriptional activator for MMPs and directly enhances MMP transcription by binding to E2F1 binding sequences in the promoter, or indirectly activates MMPs (MMP-9 and MMP-16)through enhanced Sp1 and NF-kappa B (PMID:24755270)
- the results support a role for MMP16 in promoting invasive properties of the meningioma tumours (PMID:24989599)
- Expression of MMP-16 in HTB9 and T24 cells increases following transforming growth factorbeta1 treatment. (PMID:25017509)
- MMP16 is a putative indicator of adverse melanoma prognosis. (PMID:25808867)
- These results demonstrate that the MT3-MMP promoter is frequently hypermethylated in colorectal cancer and that downregulation of MT3-MMP may be important for cell migration in colorectal cancer. (PMID:26002729)
- results suggest that miR-145 functions as a tumor metastasis suppressor gene by down-regulating MMP16 and may be a potential target in osteosarcoma treatment (PMID:26605780)
- more severe intervertebral disc degeneration is correlated with higher matrix metallopeptidase 16 (PMID:27227700)
- the present findings indicate that MT3-MMP is down-regulated in ESCC, which correlates to lymph node metastasis and poor survival of patients with this disease. (PMID:27292876)
- MMP16 was highly expressed and correlated with poor prognosis in gastric cancer patients by promoting proliferation and invasion of gastric cancer cells (PMID:27340864)
- Findings suggest that these MMP16 rs10090371, ADAMTS3 rs788935, TLL2 rs10882807 and MMP9 rs3918251 may be promising prognostic biomarkers for cutaneous melanoma specific survival (CMSS). (PMID:28796414)
- Overexpression of MMP2 and MMP16 in endometrial cancerous tissues corresponded to down-regulation of miR-377, miR-382 and miR-410, while decreased expression of TIMP2 was associated with miR-200b up-regulation. (PMID:28871006)
- HOXA11-AS could promote renal cancer cells growth and invasion by modulating miR-146b-5p-MMP16 axis. (PMID:29953617)
- A protective polymorphism in MMP16, improved blood gas levels, and chronic obstructive pulmonary diseases: Family and two population-based studies. (PMID:32196811)
- LINC01121 induced intervertebral disc degeneration via modulating miR-150-5p/MMP16 axis. (PMID:32436632)
- Role of lncRNA NEAT1 mediated by YY1 in the development of diabetic cataract via targeting the microRNA-205-3p/MMP16 axis. (PMID:32572898)
- Knockdown of MMP16 inhibits cell proliferation and invasion in chordoma in vitro. (PMID:33210500)
- Association between MMP16 rs60298754 and clinical phenotypes of Parkinson’s disease in southern Chinese. (PMID:33241532)
- microRNA-4429-5p suppresses the malignant development of colon cancer by targeting matrix metalloproteinase 16. (PMID:34448115)
- LncRNA NEAT1 regulates MMP-16 by targeting miR-200a/b to aggravate inflammation in asthma. (PMID:34448644)
- Circular RNA hsa_circ_0002360 promotes non-small cell lung cancer progression through upregulating matrix metalloproteinase 16 and sponging multiple micorRNAs. (PMID:34747300)
- Changes in the expression of membrane type-matrix metalloproteinases genes (MMP14, MMP15, MMP16, MMP24) during treatment and their potential impact on the survival of patients with non-small cell lung cancer (NSCLC). (PMID:35062057)
- MMP16 as NSCL +/- P Susceptible Gene in Western Han Chinese. (PMID:36120833)
- M1 macrophage-derived exosomes containing miR-150 inhibit glioma progression by targeting MMP16. (PMID:37244635)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mmp16b | ENSDARG00000058876 |
| danio_rerio | ENSDARG00000116438 | |
| mus_musculus | Mmp16 | ENSMUSG00000028226 |
| rattus_norvegicus | Mmp16 | ENSRNOG00000005708 |
| caenorhabditis_elegans | WBGENE00010524 | |
| caenorhabditis_elegans | WBGENE00012185 | |
| caenorhabditis_elegans | WBGENE00012364 | |
| caenorhabditis_elegans | WBGENE00016283 | |
| caenorhabditis_elegans | WBGENE00194737 |
Paralogs (23): MMP25 (ENSG00000008516), MMP2 (ENSG00000087245), MMP11 (ENSG00000099953), MMP9 (ENSG00000100985), MMP15 (ENSG00000102996), HPX (ENSG00000110169), MMP8 (ENSG00000118113), MMP19 (ENSG00000123342), MMP24 (ENSG00000125966), MMP7 (ENSG00000137673), MMP20 (ENSG00000137674), MMP27 (ENSG00000137675), MMP13 (ENSG00000137745), MMP3 (ENSG00000149968), MMP21 (ENSG00000154485), MMP14 (ENSG00000157227), MMP10 (ENSG00000166670), MMP26 (ENSG00000167346), MMP23B (ENSG00000189409), MMP1 (ENSG00000196611), MMP17 (ENSG00000198598), MMP12 (ENSG00000262406), MMP28 (ENSG00000271447)
Protein
Protein identifiers
Matrix metalloproteinase-16 — P51512 (reviewed: P51512)
Alternative names: MMP-X2, Membrane-type matrix metalloproteinase 3, Membrane-type-3 matrix metalloproteinase
All UniProt accessions (2): P51512, E5RJA7
UniProt curated annotations — full annotation on UniProt →
Function. Endopeptidase that degrades various components of the extracellular matrix, such as collagen type III and fibronectin. Activates progelatinase A. Involved in the matrix remodeling of blood vessels. Isoform short cleaves fibronectin and also collagen type III, but at lower rate. It has no effect on type I, II, IV and V collagen. However, upon interaction with CSPG4, it may be involved in degradation and invasion of type I collagen by melanoma cells.
Subunit / interactions. Interacts with CSPG4 through CSPG4 chondroitin sulfate glycosaminoglycan.
Subcellular location. Cell membrane Secreted. Extracellular space. Extracellular matrix. Cell surface.
Tissue specificity. Expressed in heart, brain, placenta, ovary and small intestine. Isoform Short is found in the ovary.
Post-translational modifications. The precursor is cleaved by a furin endopeptidase.
Activity regulation. TIMP-2 shows little inhibitory activity compared to TIMP-1. TIMP-1 seems to have less binding affinity than TIMP-2 for the short isoform.
Cofactor. Binds 2 zinc ions per subunit.
Domain organisation. The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
Similarity. Belongs to the peptidase M10A family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P51512-1 | Long | yes |
| P51512-2 | Short, SM3 |
RefSeq proteins (1): NP_005932* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000585 | Hemopexin-like_dom | Domain |
| IPR001818 | Pept_M10_metallopeptidase | Domain |
| IPR002477 | Peptidoglycan-bd-like | Domain |
| IPR006026 | Peptidase_Metallo | Domain |
| IPR018486 | Hemopexin_CS | Conserved_site |
| IPR018487 | Hemopexin-like_repeat | Repeat |
| IPR021158 | Pept_M10A_Zn_BS | Binding_site |
| IPR021190 | Pept_M10A | Family |
| IPR021805 | Pept_M10A_metallopeptidase_C | Domain |
| IPR024079 | MetalloPept_cat_dom_sf | Homologous_superfamily |
| IPR033739 | M10A_MMP | Domain |
| IPR036365 | PGBD-like_sf | Homologous_superfamily |
| IPR036375 | Hemopexin-like_dom_sf | Homologous_superfamily |
Pfam: PF00045, PF00413, PF01471, PF11857
UniProt features (53 total): binding site 18, strand 11, repeat 4, helix 3, topological domain 2, splice variant 2, turn 2, signal peptide 1, propeptide 1, region of interest 1, short sequence motif 1, compositionally biased region 1, active site 1, chain 1, glycosylation site 1, disulfide bond 1, sequence conflict 1, transmembrane region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1RM8 | X-RAY DIFFRACTION | 1.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P51512-F1 | 77.06 | 0.38 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 247
Ligand- & substrate-binding residues (18): 101 (in inhibited form); 183; 193; 195; 200; 201; 203; 205; 208; 215; 217; 219 …
Disulfide bonds (1): 343–532
Glycosylation sites (1): 83
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1592389 | Activation of Matrix Metalloproteinases |
| R-HSA-9839383 | TGFBR3 PTM regulation |
| R-HSA-1474228 | Degradation of the extracellular matrix |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-162582 | Signal Transduction |
| R-HSA-9006936 | Signaling by TGFB family members |
| R-HSA-9839373 | Signaling by TGFBR3 |
MSigDB gene sets: 251 (showing top):
GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, AAGCAAT_MIR137, TAATAAT_MIR126, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_EMBRYONIC_SKELETAL_SYSTEM_DEVELOPMENT, AREB6_03, GOBP_EMBRYONIC_SKELETAL_SYSTEM_MORPHOGENESIS, GOZGIT_ESR1_TARGETS_DN, GOCC_CELL_SURFACE, CERVERA_SDHB_TARGETS_1_DN, LIEN_BREAST_CARCINOMA_METAPLASTIC, GOBP_REPLACEMENT_OSSIFICATION, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_ANIMAL_ORGAN_MORPHOGENESIS
GO Biological Process (11): skeletal system development (GO:0001501), endochondral ossification (GO:0001958), proteolysis (GO:0006508), protein processing (GO:0016485), extracellular matrix organization (GO:0030198), collagen catabolic process (GO:0030574), chondrocyte proliferation (GO:0035988), embryonic cranial skeleton morphogenesis (GO:0048701), craniofacial suture morphogenesis (GO:0097094), ossification (GO:0001503), bone development (GO:0060348)
GO Molecular Function (8): metalloendopeptidase activity (GO:0004222), enzyme activator activity (GO:0008047), zinc ion binding (GO:0008270), metalloaminopeptidase activity (GO:0070006), peptidase activity (GO:0008233), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (7): obsolete extracellular space (GO:0005615), Golgi lumen (GO:0005796), plasma membrane (GO:0005886), cell surface (GO:0009986), extracellular matrix (GO:0031012), extracellular region (GO:0005576), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Degradation of the extracellular matrix | 1 |
| Signaling by TGFBR3 | 1 |
| Extracellular matrix organization | 1 |
| Signal Transduction | 1 |
| Signaling by TGFB family members | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cranial skeletal system development | 2 |
| catalytic activity | 2 |
| system development | 1 |
| replacement ossification | 1 |
| endochondral bone morphogenesis | 1 |
| protein metabolic process | 1 |
| proteolysis | 1 |
| protein maturation | 1 |
| extracellular structure organization | 1 |
| external encapsulating structure organization | 1 |
| catabolic process | 1 |
| collagen metabolic process | 1 |
| cell population proliferation | 1 |
| embryonic skeletal system morphogenesis | 1 |
| anatomical structure morphogenesis | 1 |
| bone morphogenesis | 1 |
| multicellular organismal process | 1 |
| skeletal system development | 1 |
| animal organ development | 1 |
| endopeptidase activity | 1 |
| metallopeptidase activity | 1 |
| enzyme regulator activity | 1 |
| molecular function activator activity | 1 |
| transition metal ion binding | 1 |
| aminopeptidase activity | 1 |
| metalloexopeptidase activity | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| peptidase activity | 1 |
| cation binding | 1 |
| Golgi apparatus | 1 |
| intracellular organelle lumen | 1 |
| membrane | 1 |
| cell periphery | 1 |
| external encapsulating structure | 1 |
Protein interactions and networks
STRING
1124 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MMP16 | SPOCK3 | Q9BQ16 | 843 |
| MMP16 | SPOCK2 | Q92563 | 817 |
| MMP16 | SPOCK1 | Q08629 | 797 |
| MMP16 | TIMP2 | P16035 | 768 |
| MMP16 | TIMP1 | P01033 | 740 |
| MMP16 | TIMP3 | P35625 | 611 |
| MMP16 | TIMP4 | Q99727 | 593 |
| MMP16 | CD44 | P16070 | 555 |
| MMP16 | PLG | P00747 | 553 |
| MMP16 | COL15A1 | P39059 | 521 |
| MMP16 | NT5C2 | P49902 | 507 |
| MMP16 | COL12A1 | Q99715 | 504 |
| MMP16 | PLAT | P00750 | 495 |
| MMP16 | CSPG4 | Q6UVK1 | 490 |
| MMP16 | VRK2 | Q86Y07 | 477 |
IntAct
2 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MMP16 | Gorasp2 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (15): MMP16 (Affinity Capture-RNA), MMP16 (Affinity Capture-MS), MMP17 (Negative Genetic), MMP24 (Negative Genetic), MMP16 (Negative Genetic), MMP16 (Negative Genetic), MMP16 (Negative Genetic), MMP16 (Negative Genetic), MMP16 (Negative Genetic), MMP16 (Negative Genetic), MMP20 (Negative Genetic), MMP27 (Negative Genetic), MMP7 (Negative Genetic), MMP8 (Negative Genetic), MMP16 (Affinity Capture-RNA)
ESM2 similar proteins: A0A044RE18, B4F6N6, B5DF27, E1C3U7, F1QQC3, G5ECN9, O17798, O35548, O64481, P09231, P09958, P13134, P16519, P21661, P23188, P23377, P28840, P28841, P29119, P29120, P29122, P29145, P29146, P30432, P41413, P51512, P51559, P58022, P63239, P63240, P91863, Q03333, Q04592, Q08B63, Q09175, Q28193, Q5REC2, Q63415, Q8QGP3, Q8SQJ3
Diamond homologs: D0EM77, G5EBU3, O04529, O13065, O18733, O18767, O18927, O23507, O35548, O44836, O54732, O55123, O55761, O60882, O62806, O70138, O75900, O77656, O88272, O88676, O88766, O93470, P03956, P03957, P07152, P08253, P08254, P09237, P09238, P13943, P14780, P21692, P22757, P22894, P23097, P24347, P28053, P28862, P28863, P29136
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MMP16 | up-regulates | ECM_disassembly | |
| MMP16 | down-regulates | ECM |
Disease & clinical
Clinical variants and AI predictions
ClinVar
65 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 49 |
| Likely benign | 1 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3662 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:88035975:A:C | acceptor_gain | 1.0000 |
| 8:88046663:GCATA:G | donor_loss | 1.0000 |
| 8:88046664:CATAC:C | donor_loss | 1.0000 |
| 8:88046665:ATAC:A | donor_loss | 1.0000 |
| 8:88046666:TACCA:T | donor_loss | 1.0000 |
| 8:88046667:ACCAT:A | donor_loss | 1.0000 |
| 8:88046692:C:CA | donor_gain | 1.0000 |
| 8:88046782:TAT:T | acceptor_gain | 1.0000 |
| 8:88056123:CTGA:C | donor_loss | 1.0000 |
| 8:88056124:TGA:T | donor_loss | 1.0000 |
| 8:88056125:GA:G | donor_loss | 1.0000 |
| 8:88056126:A:AG | donor_loss | 1.0000 |
| 8:88056127:C:T | donor_loss | 1.0000 |
| 8:88056127:CCTGT:C | donor_gain | 1.0000 |
| 8:88056277:ACC:A | acceptor_loss | 1.0000 |
| 8:88056283:A:C | acceptor_gain | 1.0000 |
| 8:88118697:TA:T | donor_loss | 1.0000 |
| 8:88118698:A:AC | donor_gain | 1.0000 |
| 8:88118699:C:CA | donor_loss | 1.0000 |
| 8:88118699:C:CC | donor_gain | 1.0000 |
| 8:88141048:A:C | donor_gain | 1.0000 |
| 8:88141086:T:A | donor_gain | 1.0000 |
| 8:88167663:ACTT:A | donor_loss | 1.0000 |
| 8:88167666:TACC:T | donor_loss | 1.0000 |
| 8:88167667:A:AC | donor_gain | 1.0000 |
| 8:88167667:AC:A | donor_gain | 1.0000 |
| 8:88167667:ACCAT:A | donor_gain | 1.0000 |
| 8:88167668:C:CG | donor_gain | 1.0000 |
| 8:88167668:CC:C | donor_gain | 1.0000 |
| 8:88167668:CCA:C | donor_gain | 1.0000 |
AlphaMissense
4024 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:88046718:C:A | W480C | 1.000 |
| 8:88046718:C:G | W480C | 1.000 |
| 8:88046720:A:G | W480R | 1.000 |
| 8:88046720:A:T | W480R | 1.000 |
| 8:88074674:A:G | W385R | 1.000 |
| 8:88074674:A:T | W385R | 1.000 |
| 8:88074727:C:G | R367P | 1.000 |
| 8:88074731:A:G | W366R | 1.000 |
| 8:88074731:A:T | W366R | 1.000 |
| 8:88116514:A:T | V359D | 1.000 |
| 8:88116562:C:G | C343S | 1.000 |
| 8:88116563:A:T | C343S | 1.000 |
| 8:88118726:T:C | D282G | 1.000 |
| 8:88118727:C:G | D282H | 1.000 |
| 8:88118738:A:T | L278Q | 1.000 |
| 8:88118779:C:A | M264I | 1.000 |
| 8:88118779:C:G | M264I | 1.000 |
| 8:88118779:C:T | M264I | 1.000 |
| 8:88118780:A:C | M264R | 1.000 |
| 8:88118780:A:G | M264T | 1.000 |
| 8:88118786:G:T | A262D | 1.000 |
| 8:88118787:C:G | A262P | 1.000 |
| 8:88118801:G:A | S257F | 1.000 |
| 8:88118802:A:G | S257P | 1.000 |
| 8:88118803:A:C | H256Q | 1.000 |
| 8:88118803:A:T | H256Q | 1.000 |
| 8:88118804:T:C | H256R | 1.000 |
| 8:88118805:G:C | H256D | 1.000 |
| 8:88118810:A:G | L254S | 1.000 |
| 8:88118813:C:T | G253E | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000000891 (8:88181277 T>C), RS1000007563 (8:88049436 T>C), RS1000018420 (8:88051498 T>A,C), RS1000023598 (8:88185518 A>G), RS1000039588 (8:88309064 T>C), RS1000039823 (8:88265720 G>T), RS1000042357 (8:88249992 A>G,T), RS1000048837 (8:88244356 C>T), RS1000051779 (8:88268776 A>C), RS1000056161 (8:88185066 T>A), RS1000065474 (8:88271622 T>A), RS1000080170 (8:88100563 G>A), RS1000083333 (8:88166315 G>C), RS1000089671 (8:88296197 G>A), RS1000097337 (8:88224024 T>C)
Disease associations
OMIM: gene MIM:602262 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
29 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001242_12 | Schizophrenia | 2.000000e-07 |
| GCST001440_1 | Body mass index and cholesterol (psychopharmacological treatment) | 6.000000e-08 |
| GCST001565_11 | Schizophrenia | 6.000000e-08 |
| GCST001877_37 | Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined) | 3.000000e-08 |
| GCST002078_1 | Migraine without aura | 1.000000e-08 |
| GCST002149_21 | Schizophrenia | 3.000000e-08 |
| GCST002539_74 | Schizophrenia | 1.000000e-08 |
| GCST003073_5 | Cerebral amyloid deposition (PET imaging) | 7.000000e-07 |
| GCST004049_30 | Cough in response to angiotensin-converting enzyme inhibitor drugs | 3.000000e-06 |
| GCST004521_109 | Autism spectrum disorder or schizophrenia | 2.000000e-08 |
| GCST004521_288 | Autism spectrum disorder or schizophrenia | 5.000000e-08 |
| GCST004946_102 | Schizophrenia | 1.000000e-08 |
| GCST006803_80 | Schizophrenia | 7.000000e-09 |
| GCST006941_30 | Irritable mood | 6.000000e-09 |
| GCST006979_467 | Heel bone mineral density | 1.000000e-16 |
| GCST007201_100 | Schizophrenia | 3.000000e-08 |
| GCST007201_311 | Schizophrenia | 7.000000e-07 |
| GCST008018_5 | Sweet taste perception in obesity with metabolic syndrome | 8.000000e-06 |
| GCST008103_110 | Bipolar disorder | 4.000000e-06 |
| GCST010002_308 | Refractive error | 1.000000e-10 |
| GCST90000025_367 | Appendicular lean mass | 4.000000e-26 |
| GCST90020024_179 | A body shape index | 1.000000e-08 |
| GCST90020024_181 | A body shape index | 7.000000e-12 |
| GCST90020025_1022 | Waist-to-hip ratio adjusted for BMI | 2.000000e-08 |
| GCST90020025_1023 | Waist-to-hip ratio adjusted for BMI | 1.000000e-11 |
| GCST90020027_1379 | Waist-hip index | 6.000000e-09 |
| GCST90020027_1380 | Waist-hip index | 6.000000e-12 |
| GCST90020029_87 | Waist circumference adjusted for body mass index | 2.000000e-08 |
| GCST90020029_89 | Waist circumference adjusted for body mass index | 2.000000e-11 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0007707 | cerebral amyloid deposition measurement |
| EFO:0005325 | response to angiotensin-converting enzyme inhibitor |
| EFO:0009594 | irritability measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0004980 | appendicular lean mass |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2200 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 41,512 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL279785 | MARIMASTAT | 3 | 29,447 |
| CHEMBL19611 | ILOMASTAT | 2 | 12,065 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — M10: Matrix metallopeptidase
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| ilomastat | Inhibition | 8.1 | pIC50 |
| SL422 | Inhibition | 7.46 | pKi |
ChEMBL bioactivities
52 potent at pChembl≥5 of 57 total, top 49 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.51 | IC50 | 0.31 | nM | CHEMBL471537 |
| 9.00 | IC50 | 1 | nM | CHEMBL234530 |
| 8.81 | IC50 | 1.56 | nM | CHEMBL515980 |
| 8.17 | IC50 | 6.8 | nM | CGS-27023A |
| 8.10 | IC50 | 8 | nM | ILOMASTAT |
| 7.94 | IC50 | 11.4 | nM | CHEMBL472899 |
| 7.80 | IC50 | 16 | nM | CHEMBL148214 |
| 7.68 | IC50 | 21 | nM | CHEMBL147882 |
| 7.66 | IC50 | 22 | nM | CHEMBL358539 |
| 7.50 | IC50 | 32 | nM | CHEMBL573715 |
| 7.46 | Ki | 35 | nM | CHEMBL88520 |
| 7.46 | IC50 | 35 | nM | CHEMBL147881 |
| 7.41 | IC50 | 39 | nM | CHEMBL1939846 |
| 7.40 | IC50 | 40 | nM | CHEMBL148171 |
| 7.36 | IC50 | 44 | nM | CHEMBL234529 |
| 7.29 | IC50 | 51 | nM | CHEMBL561963 |
| 7.29 | IC50 | 51 | nM | CHEMBL179288 |
| 7.25 | IC50 | 56 | nM | CHEMBL146718 |
| 6.97 | Ki | 107 | nM | CHEMBL91636 |
| 6.89 | IC50 | 130 | nM | CHEMBL573714 |
| 6.89 | IC50 | 130 | nM | CHEMBL584365 |
| 6.82 | IC50 | 150 | nM | CHEMBL572780 |
| 6.75 | IC50 | 177 | nM | CHEMBL147489 |
| 6.74 | IC50 | 184 | nM | CHEMBL146289 |
| 6.73 | IC50 | 186 | nM | CHEMBL234735 |
| 6.70 | IC50 | 202 | nM | CHEMBL148406 |
| 6.66 | IC50 | 220 | nM | CHEMBL574370 |
| 6.33 | IC50 | 470 | nM | CHEMBL574605 |
| 6.14 | IC50 | 730 | nM | CHEMBL573936 |
| 6.05 | IC50 | 900 | nM | CHEMBL181244 |
| 6.03 | IC50 | 940 | nM | BAY-7598 |
| 6.00 | IC50 | 996 | nM | CHEMBL515083 |
| 5.96 | IC50 | 1100 | nM | CHEMBL584147 |
| 5.96 | IC50 | 1100 | nM | CHEMBL1939844 |
| 5.92 | IC50 | 1200 | nM | CHEMBL573934 |
| 5.89 | IC50 | 1300 | nM | CHEMBL575896 |
| 5.80 | Ki | 1599 | nM | CHEMBL148169 |
| 5.78 | IC50 | 1677 | nM | CHEMBL356124 |
| 5.74 | IC50 | 1839 | nM | CHEMBL424130 |
| 5.70 | Ki | 2000 | nM | CHEMBL325163 |
| 5.66 | IC50 | 2200 | nM | CHEMBL1939845 |
| 5.37 | IC50 | 4300 | nM | CHEMBL573935 |
| 5.33 | IC50 | 4633 | nM | CHEMBL147604 |
| 5.30 | IC50 | 5000 | nM | CHEMBL550548 |
| 5.29 | IC50 | 5100 | nM | CHEMBL574589 |
| 5.22 | IC50 | 6000 | nM | CHEMBL584122 |
| 5.20 | IC50 | 6300 | nM | CHEMBL579068 |
| 5.19 | IC50 | 6500 | nM | CHEMBL579067 |
| 5.00 | IC50 | 1e+04 | nM | MARIMASTAT |
PubChem BioAssay actives
51 with measured affinity, of 82 total; 48 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R)-N-hydroxy-3-methyl-2-[[2-oxo-2-[2-(4-sulfamoylphenyl)ethylamino]ethyl]-(4-phenoxyphenyl)sulfonylamino]butanamide | 413962: Inhibition of MMP16 | ic50 | 0.0003 | uM |
| 2-[[2-(hydroxyamino)-2-oxoethyl]-(4-phenoxyphenyl)sulfonylamino]-N-[2-(4-sulfamoylphenyl)ethyl]acetamide | 413962: Inhibition of MMP16 | ic50 | 0.0010 | uM |
| 2-[[(2R)-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]-(4-phenoxyphenyl)sulfonylamino]acetic acid | 413962: Inhibition of MMP16 | ic50 | 0.0016 | uM |
| (2R)-N-hydroxy-2-[(4-methoxyphenyl)sulfonyl-(pyridin-3-ylmethyl)amino]-3-methylbutanamide;hydrochloride | 413962: Inhibition of MMP16 | ic50 | 0.0068 | uM |
| (2R)-N’-hydroxy-N-[(2S)-3-(1H-indol-3-yl)-1-(methylamino)-1-oxopropan-2-yl]-2-(2-methylpropyl)butanediamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0080 | uM |
| 2-[[2-(hydroxyamino)-2-oxoethyl]-(4-phenoxyphenyl)sulfonylamino]acetic acid | 413962: Inhibition of MMP16 | ic50 | 0.0114 | uM |
| N,6-dihydroxy-7-methoxy-2-(4-methoxyphenyl)sulfonyl-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0160 | uM |
| N,6-dihydroxy-2-(4-methylphenyl)sulfonyl-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0210 | uM |
| N-hydroxy-2-(4-methoxyphenyl)sulfonyl-6-phenylmethoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0220 | uM |
| N-hydroxy-2-[2-[4-(4-methoxyphenoxy)phenyl]sulfonylphenyl]acetamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.0320 | uM |
| (6S,7R,10S)-6-N-hydroxy-10-N-[2-(methylamino)-2-oxoethyl]-7-(2-methylpropyl)-8-oxo-2-oxa-9-azabicyclo[10.2.2]hexadeca-1(14),12,15-triene-6,10-dicarboxamide | 109573: Inhibition of matrix metalloprotease-16 | ki | 0.0350 | uM |
| 2-(benzenesulfonyl)-N-hydroxy-6-phenylmethoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0350 | uM |
| (3R)-1-hydroxy-4-(4-phenoxyphenyl)sulfonyl-3-propan-2-ylpiperazine-2,6-dione | 641681: Inhibition of human recombinant MMP16 using Mca-Lys-Pro-Leu-Gly-Leu-Dap(Dnp)-Ala-Arg-NH2 as substrate preincubated for 4 hrs measured every 15 secs for 20 mins by fluorescence analysis | ic50 | 0.0390 | uM |
| 2-(benzenesulfonyl)-N,6-dihydroxy-7-methoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0400 | uM |
| 2-[[2-(hydroxyamino)-2-oxoethyl]-(4-methoxyphenyl)sulfonylamino]-N-[2-(4-sulfamoylphenyl)ethyl]acetamide | 413962: Inhibition of MMP16 | ic50 | 0.0440 | uM |
| (2R)-N-hydroxy-3-methyl-2-[(4-phenylphenyl)sulfonyl-propan-2-yloxyamino]butanamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.0510 | uM |
| N-hydroxy-3-methyl-2-[propan-2-yloxy-[4-(4-propan-2-ylphenyl)phenyl]sulfonylamino]butanamide | 419744: Inhibition of human recombinant MMP16 | ic50 | 0.0510 | uM |
| N-hydroxy-2-(4-methylphenyl)sulfonyl-6-phenylmethoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.0560 | uM |
| (8S,11R,12S)-12-N-hydroxy-11-(2-methylpropyl)-8-N-(2-morpholin-4-yl-2-oxoethyl)-2,10-dioxo-1-oxa-3,9-diazacyclopentadecane-8,12-dicarboxamide | 109573: Inhibition of matrix metalloprotease-16 | ki | 0.1070 | uM |
| N-hydroxy-2-[2-(4-methoxyphenyl)sulfonylphenyl]acetamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.1300 | uM |
| N-hydroxy-2-[2-[4-(4-methoxyphenyl)phenyl]sulfonylphenyl]acetamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.1300 | uM |
| N-hydroxy-2-[2-[4-(4-methoxyphenyl)phenyl]sulfonylphenyl]propanamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.1500 | uM |
| N,6-dihydroxy-2-(4-nitrophenyl)sulfonyl-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.1770 | uM |
| 2-(benzenesulfonyl)-N,6-dihydroxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.1840 | uM |
| 2-[[2-(hydroxyamino)-2-oxoethyl]-(4-phenylphenyl)sulfonylamino]-N-[2-(4-sulfamoylphenyl)ethyl]acetamide | 413962: Inhibition of MMP16 | ic50 | 0.1860 | uM |
| 2-(4-aminophenyl)sulfonyl-N,6-dihydroxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 0.2020 | uM |
| N-hydroxy-2-[2-(4-phenylphenyl)sulfonylphenyl]acetamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.2200 | uM |
| N-hydroxy-2-[2-(4-phenylphenyl)sulfonylphenyl]propanamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.4700 | uM |
| 2-[2-[4-(4-methoxyphenyl)phenyl]sulfonylphenyl]acetic acid | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 0.7300 | uM |
| N-hydroxy-2-[(4-phenylphenyl)sulfonyl-propan-2-yloxyamino]acetamide | 419744: Inhibition of human recombinant MMP16 | ic50 | 0.9000 | uM |
| 2-[[2-(hydroxyamino)-2-oxoethyl]-(4-methoxyphenyl)sulfonylamino]acetic acid | 413962: Inhibition of MMP16 | ic50 | 0.9960 | uM |
| 2-[2-[4-(4-methoxyphenyl)phenyl]sulfonylphenyl]propanoic acid | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 1.1000 | uM |
| (3R)-1-hydroxy-4-(4-methoxyphenyl)sulfonyl-3-propan-2-ylpiperazine-2,6-dione | 641681: Inhibition of human recombinant MMP16 using Mca-Lys-Pro-Leu-Gly-Leu-Dap(Dnp)-Ala-Arg-NH2 as substrate preincubated for 4 hrs measured every 15 secs for 20 mins by fluorescence analysis | ic50 | 1.1000 | uM |
| N-hydroxy-2-[4-(4-methoxyphenyl)phenyl]sulfonylbenzamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 1.2000 | uM |
| N-hydroxy-2-(4-phenoxyphenyl)sulfonylbenzamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 1.3000 | uM |
| (2R)-N-hydroxy-2-[(3S)-3-methyl-3-[4-[(2-methylquinolin-4-yl)methoxy]phenyl]-2-oxopyrrolidin-1-yl]propanamide | 109572: Affinity for Matrix metalloprotease-16 (MMP-16) | ki | 1.5990 | uM |
| N,6-dihydroxy-2-(4-methoxyphenyl)sulfonyl-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 1.6770 | uM |
| 2-(2,5-dichlorophenyl)sulfonyl-N,6-dihydroxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 1.8390 | uM |
| (8S,11R,12S)-12-N-hydroxy-8-N-(2-morpholin-4-yl-2-oxoethyl)-2,10-dioxo-11-[[4-[2-(trifluoromethyl)phenyl]phenyl]methyl]-1-oxa-3,9-diazacyclopentadecane-8,12-dicarboxamide | 109574: Inhibition of matrix metalloprotease-16 | ki | 2.0000 | uM |
| (3R)-1-hydroxy-4-(4-phenylphenyl)sulfonyl-3-propan-2-ylpiperazine-2,6-dione | 641681: Inhibition of human recombinant MMP16 using Mca-Lys-Pro-Leu-Gly-Leu-Dap(Dnp)-Ala-Arg-NH2 as substrate preincubated for 4 hrs measured every 15 secs for 20 mins by fluorescence analysis | ic50 | 2.2000 | uM |
| 2-[2-(4-phenylphenyl)sulfonylphenyl]acetic acid | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 4.3000 | uM |
| 2-(2,5-dichlorophenyl)sulfonyl-N-hydroxy-6-phenylmethoxy-3,4-dihydro-1H-isoquinoline-1-carboxamide | 109575: Inhibition of matrix metalloprotease-16 (MMP-16) | ic50 | 4.6330 | uM |
| (2R)-2-[[4-[4-[(4-chlorophenyl)methoxy]phenyl]phenyl]sulfonyl-propan-2-yloxyamino]-N-hydroxy-3-methylbutanamide | 419744: Inhibition of human recombinant MMP16 | ic50 | 5.0000 | uM |
| N-hydroxy-2-(4-phenylphenyl)sulfonylbenzamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 5.1000 | uM |
| N-hydroxy-2-[4-(4-methoxyphenoxy)phenyl]sulfonylbenzamide | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 6.0000 | uM |
| 2-[2-(4-phenylphenyl)sulfonylphenyl]propanoic acid | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 6.3000 | uM |
| 2-[2-[4-(4-methoxyphenoxy)phenyl]sulfonylphenyl]acetic acid | 440428: Inhibition of human recombinant pro-MMP16 catalytic domain after 4 hrs by fluorimetry | ic50 | 6.5000 | uM |
| (2R,3S)-N-[(2S)-3,3-dimethyl-1-(methylamino)-1-oxobutan-2-yl]-N’,3-dihydroxy-2-(2-methylpropyl)butanediamide | 1274673: Inhibition of MMP16 (unknown origin) catalytic domain using MCA-Arg-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-Glu-Arg-NH2 as substrate preincubated for 60 mins followed by substrate addition by fluorescence assay | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
52 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, increases expression | 3 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Resveratrol | decreases expression, affects cotreatment | 2 |
| Vorinostat | decreases expression, increases expression | 2 |
| Arsenic | affects methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Estradiol | decreases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Valproic Acid | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| geldanamycin | increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| afimoxifene | decreases expression, decreases reaction | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| cobaltous chloride | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| mercuric bromide | decreases expression | 1 |
| glycidamide | decreases expression | 1 |
| chromium hexavalent ion | decreases expression | 1 |
| CGS 27023A | affects activity | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Calcitriol | decreases expression, affects cotreatment | 1 |
| Cisplatin | increases expression | 1 |
ChEMBL screening assays
20 unique, capped per target: 20 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1005428 | Binding | Inhibition of MMP16 up to 100 uM | Specific targeting of metzincin family members with small-molecule inhibitors: progress toward a multifarious challenge. — Bioorg Med Chem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_SY62 | HAP1 MMP16 (-) 1 | Cancer cell line | Male |
| CVCL_SY63 | HAP1 MMP16 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.