MMP21
gene geneOn this page
Summary
MMP21 (matrix metallopeptidase 21, HGNC:14357) is a protein-coding gene on chromosome 10q26.2, encoding Matrix metalloproteinase-21 (Q8N119). Plays a specialized role in the generation of left-right asymmetry during embryogenesis.
This gene encodes a member of the matrix metalloproteinase family. Proteins in this family are involved in the breakdown of extracellular matrix for both normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, and disease processes, such as asthma and tumor metastasis. The encoded protein may play an important role in embryogenesis, particularly in neuronal cells, as well as in lymphocyte development and survival.
Source: NCBI Gene 118856 — RefSeq curated summary.
At a glance
- Gene–disease (curated): heterotaxy, visceral, 7, autosomal (Definitive, GenCC) — +1 more curated relationship
- GWAS associations: 1
- Clinical variants (ClinVar): 176 total — 11 pathogenic, 9 likely-pathogenic
- MANE Select transcript:
NM_147191
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14357 |
| Approved symbol | MMP21 |
| Name | matrix metallopeptidase 21 |
| Location | 10q26.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000154485 |
| Ensembl biotype | protein_coding |
| OMIM | 608416 |
| Entrez | 118856 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 3 protein_coding, 1 nonsense_mediated_decay
ENST00000368808, ENST00000651834, ENST00000651977, ENST00000652044
RefSeq mRNA: 1 — MANE Select: NM_147191
NM_147191
CCDS: CCDS7647
Canonical transcript exons
ENST00000368808 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001016161 | 125772611 | 125772750 |
| ENSE00001016164 | 125772218 | 125772359 |
| ENSE00001016165 | 125770334 | 125770591 |
| ENSE00001016168 | 125767532 | 125767704 |
| ENSE00001448003 | 125766453 | 125766961 |
| ENSE00001448004 | 125775660 | 125775821 |
| ENSE00003843060 | 125773831 | 125774365 |
Expression profiles
Bgee: expression breadth ubiquitous, 160 present calls, max score 88.02.
Top tissues by expression
247 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.02 | gold quality |
| corpus epididymis | UBERON:0004359 | 81.42 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.21 | gold quality |
| left ovary | UBERON:0002119 | 73.25 | gold quality |
| right ovary | UBERON:0002118 | 71.65 | gold quality |
| body of pancreas | UBERON:0001150 | 68.81 | gold quality |
| ovary | UBERON:0000992 | 68.02 | gold quality |
| minor salivary gland | UBERON:0001830 | 66.90 | gold quality |
| ectocervix | UBERON:0012249 | 65.71 | gold quality |
| right atrium auricular region | UBERON:0006631 | 65.53 | gold quality |
| right uterine tube | UBERON:0001302 | 65.43 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 65.39 | gold quality |
| body of uterus | UBERON:0009853 | 65.27 | gold quality |
| cardiac atrium | UBERON:0002081 | 64.89 | gold quality |
| endocervix | UBERON:0000458 | 64.83 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 64.76 | gold quality |
| cerebellar cortex | UBERON:0002129 | 64.72 | gold quality |
| metanephros cortex | UBERON:0010533 | 64.34 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 63.73 | gold quality |
| lower esophagus | UBERON:0013473 | 63.71 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 63.64 | gold quality |
| ventricular zone | UBERON:0003053 | 63.57 | gold quality |
| mouth mucosa | UBERON:0003729 | 63.47 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 63.36 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 63.29 | gold quality |
| tibial nerve | UBERON:0001323 | 63.26 | gold quality |
| body of stomach | UBERON:0001161 | 63.18 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 63.05 | gold quality |
| pancreas | UBERON:0001264 | 62.85 | gold quality |
| cerebellum | UBERON:0002037 | 62.82 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 4.52 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
19 targeting MMP21, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-6844 | 99.82 | 70.69 | 2423 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-4465 | 99.71 | 72.56 | 2096 |
| HSA-MIR-6839-3P | 99.39 | 68.86 | 1301 |
| HSA-MIR-19A-5P | 99.36 | 66.93 | 1675 |
| HSA-MIR-19B-1-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-19B-2-5P | 99.36 | 67.07 | 1669 |
| HSA-MIR-2115-3P | 99.31 | 69.68 | 2026 |
| HSA-MIR-5690 | 99.25 | 67.58 | 1012 |
| HSA-MIR-361-5P | 98.95 | 70.16 | 1340 |
Literature-anchored findings (GeneRIF, showing 18)
- The MMP-21 gene 572C/T polymorphism has no significant effect on the development and progression of breast cancer. (PMID:15015597)
- During esophageal tumorigenesis, MMP-21 and MMP-26 have different, unique expression patterns. (PMID:16641547)
- results suggest that MMP-21 and MMP-26 are not only associated with cancer but may be important in connective tissue remodelling and pathobiology of various benign skin disorde (PMID:16984259)
- MMP-21 is not a marker of invasiveness, but rather of differentiation, in pancreatic cancer (PMID:17873896)
- MMP-21 may be an important protease in the terminal differentiation of keratinocytes (PMID:18633436)
- A nonsynchronous polymorphism in the MMP-21 promoter does not significantly confer susceptibility to hepatocellular carcinoma in a southern Chinese population. (PMID:18768525)
- MMP-21 does not associate with invasion of squamous cell cancer but may be involved in keratinocyte differentiation. (PMID:19601983)
- MMP-21 was expressed by Merkel cell carcinoma cells in 13/43 cases and in eight samples by stromal neutrophils. None of the samples with MMP-21-expressing neutrophils had metastasized to the lymph nodes (PMID:19921252)
- MMP-21 expression is elevated in primary CRC and related to tumor invasion and metastasis. MMP-21 was also proved to be an independent prognostic factor for patients with stage II and stage III colorectal cancer. (PMID:21656525)
- analysis proved MMP-21 to be an independent prognostic factor for overall survival of gastric cancer patients (PMID:23275114)
- These results suggest that high MMP-21 expression in lymph node metastatic foci can be used to predict survival in OSCC patients with LNM (PMID:24700287)
- Increased MMP-21 expression in esophageal squamous cell carcinoma is associated with progression and lymph node metastasis. (PMID:25015395)
- loss of MMP21 as a cause of heterotaxy in humans with concomitant defects in Notch signaling. (PMID:26429889)
- Data show that MMP21 (encoding matrix metallopeptidase 21) point mutations were verified by Sanger sequencing, and segregation analysis indicated recessive inheritance. (PMID:26437028)
- MMP-21 572TT genotype increased the risk for the HIV-associated neurocognitive disorder. (PMID:29575199)
- TWIST1, MMP-21, and HLAG-1 co-overexpression is associated with ESCC aggressiveness. (PMID:31016793)
- A novel miRNA-4484 is up-regulated on microarray and associated with increased MMP-21 expression in serum of systemic sclerosis patients. (PMID:31582779)
- De novo disruptive heterozygous MMP21 variants are potential predisposing genetic risk factors in Chinese Han heterotaxy children. (PMID:36123719)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mmp21 | ENSDARG00000112495 |
| mus_musculus | Mmp21 | ENSMUSG00000030981 |
| rattus_norvegicus | Mmp21 | ENSRNOG00000017756 |
| caenorhabditis_elegans | WBGENE00010423 |
Paralogs (23): MMP25 (ENSG00000008516), MMP2 (ENSG00000087245), MMP11 (ENSG00000099953), MMP9 (ENSG00000100985), MMP15 (ENSG00000102996), HPX (ENSG00000110169), MMP8 (ENSG00000118113), MMP19 (ENSG00000123342), MMP24 (ENSG00000125966), MMP7 (ENSG00000137673), MMP20 (ENSG00000137674), MMP27 (ENSG00000137675), MMP13 (ENSG00000137745), MMP3 (ENSG00000149968), MMP16 (ENSG00000156103), MMP14 (ENSG00000157227), MMP10 (ENSG00000166670), MMP26 (ENSG00000167346), MMP23B (ENSG00000189409), MMP1 (ENSG00000196611), MMP17 (ENSG00000198598), MMP12 (ENSG00000262406), MMP28 (ENSG00000271447)
Protein
Protein identifiers
Matrix metalloproteinase-21 — Q8N119 (reviewed: Q8N119)
All UniProt accessions (4): Q8N119, A0A494C0E5, A0A494C1E5, A0A494C1J6
UniProt curated annotations — full annotation on UniProt →
Function. Plays a specialized role in the generation of left-right asymmetry during embryogenesis. May act as a negative regulator of the NOTCH-signaling pathway. Cleaves alpha-1-antitrypsin.
Subcellular location. Secreted.
Tissue specificity. Identified in fetal brain, kidney and liver. In adult tissues found primarily in ovary, kidney, liver, lung, placenta, brain and peripheral blood leukocytes. Expressed as well in various cancer cell lines.
Post-translational modifications. The precursor is cleaved by a furin endopeptidase.
Disease relevance. Heterotaxy, visceral, 7, autosomal (HTX7) [MIM:616749] A form of visceral heterotaxy, a complex disorder due to disruption of the normal left-right asymmetry of the thoracoabdominal organs. Visceral heterotaxy or situs ambiguus results in randomization of the placement of visceral organs, including the heart, lungs, liver, spleen, and stomach. The organs are oriented randomly with respect to the left-right axis and with respect to one another. It can be associated with a variety of congenital defects including cardiac malformations. HTX7 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 zinc ion per subunit.
Domain organisation. The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
Similarity. Belongs to the peptidase M10A family.
RefSeq proteins (1): NP_671724* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000585 | Hemopexin-like_dom | Domain |
| IPR001818 | Pept_M10_metallopeptidase | Domain |
| IPR002477 | Peptidoglycan-bd-like | Domain |
| IPR006026 | Peptidase_Metallo | Domain |
| IPR018487 | Hemopexin-like_repeat | Repeat |
| IPR021190 | Pept_M10A | Family |
| IPR024079 | MetalloPept_cat_dom_sf | Homologous_superfamily |
| IPR033739 | M10A_MMP | Domain |
| IPR036365 | PGBD-like_sf | Homologous_superfamily |
| IPR036375 | Hemopexin-like_dom_sf | Homologous_superfamily |
Pfam: PF00045, PF00413, PF01471
UniProt features (35 total): sequence variant 17, binding site 4, repeat 4, compositionally biased region 2, signal peptide 1, propeptide 1, active site 1, glycosylation site 1, disulfide bond 1, chain 1, region of interest 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N119-F1 | 84.44 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 284
Ligand- & substrate-binding residues (4): 117 (in inhibited form); 283; 287; 293
Disulfide bonds (1): 329–560
Glycosylation sites (1): 372
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 87 (showing top):
GOBP_HEMATOPOIETIC_PROGENITOR_CELL_DIFFERENTIATION, GOBP_CORONARY_VASCULATURE_DEVELOPMENT, GOMF_METALLOPEPTIDASE_ACTIVITY, GOBP_SPECIFICATION_OF_SYMMETRY, TCF4_Q5, LEF1_Q6, GOBP_CIRCULATORY_SYSTEM_DEVELOPMENT, GOBP_PROTEOLYSIS, GOMF_PEPTIDASE_ACTIVITY, ROVERSI_GLIOMA_COPY_NUMBER_DN, GOBP_COLLAGEN_CATABOLIC_PROCESS, GOBP_COLLAGEN_METABOLIC_PROCESS, GOCC_EXTERNAL_ENCAPSULATING_STRUCTURE, MIR551B_5P, MIR6844
GO Biological Process (7): hematopoietic progenitor cell differentiation (GO:0002244), proteolysis (GO:0006508), determination of left/right symmetry (GO:0007368), extracellular matrix organization (GO:0030198), collagen catabolic process (GO:0030574), coronary vasculature development (GO:0060976), determination of heart left/right asymmetry (GO:0061371)
GO Molecular Function (6): metalloendopeptidase activity (GO:0004222), zinc ion binding (GO:0008270), peptidase activity (GO:0008233), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (2): extracellular region (GO:0005576), extracellular matrix (GO:0031012)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| heart development | 2 |
| hemopoiesis | 1 |
| cell differentiation | 1 |
| protein metabolic process | 1 |
| determination of bilateral symmetry | 1 |
| left/right pattern formation | 1 |
| extracellular structure organization | 1 |
| external encapsulating structure organization | 1 |
| catabolic process | 1 |
| collagen metabolic process | 1 |
| blood vessel development | 1 |
| determination of left/right symmetry | 1 |
| endopeptidase activity | 1 |
| metallopeptidase activity | 1 |
| transition metal ion binding | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| peptidase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| cellular anatomical structure | 1 |
| external encapsulating structure | 1 |
Protein interactions and networks
STRING
308 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MMP21 | CDK13 | Q14004 | 848 |
| MMP21 | CDK11A | Q9UQ88 | 767 |
| MMP21 | CDK11B | P21127 | 763 |
| MMP21 | HPX | P02790 | 720 |
| MMP21 | FURIN | P09958 | 610 |
| MMP21 | CFAP52 | Q8N1V2 | 529 |
| MMP21 | CFAP53 | Q96M91 | 501 |
| MMP21 | PKD1L1 | Q8TDX9 | 493 |
| MMP21 | LLGL2 | Q6P1M3 | 410 |
| MMP21 | ZIC3 | O60481 | 400 |
| MMP21 | CFC1 | P0CG37 | 394 |
| MMP21 | GAPDHS | O14556 | 360 |
| MMP21 | ACVR2B | Q13705 | 348 |
| MMP21 | TIMP3 | P35625 | 345 |
| MMP21 | TIMP2 | P16035 | 340 |
IntAct
0 interactions, top by confidence:
BioGRID (2): MMP21 (Affinity Capture-MS), MMP21 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A0N9E2K8, A0A1D5NSK0, A0A8M9PFP2, G5ECS8, G5EFD9, O15072, O18767, O43909, O60882, O62806, O77656, O93470, P07152, P22003, P23097, P28825, P29788, P33435, P49003, P57748, P79287, Q10835, Q11005, Q14703, Q16819, Q16820, Q19791, Q24025, Q3U435, Q568B8, Q61847, Q64230, Q6GQB9, Q6NP60, Q8CGD2, Q8K3F2, Q8N119, Q8R4K8, Q8VDA1, Q90YC2
Diamond homologs: A0A0N9E2K8, D0EM77, G5EBU3, O04529, O54732, O55761, O75900, O88272, O88676, O93470, P04004, P22458, P22757, P41245, P48819, P50280, P51511, P53690, P55032, Q02853, Q10739, Q196W5, Q2TBM7, Q499S5, Q5XF51, Q8K3F2, Q8N119, Q90YC2, Q99542, Q9NRE1, A4KX75, O18733, O18767, O18927, O23507, O55123, O60882, O62806, O77656, P03956
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MMP21 | up-regulates | ECM_disassembly | |
| MMP21 | down-regulates | ECM |
Disease & clinical
Clinical variants and AI predictions
ClinVar
176 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 11 |
| Likely pathogenic | 9 |
| Uncertain significance | 116 |
| Likely benign | 22 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (20)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1275820 | NM_147191.1(MMP21):c.937G>T (p.Glu313Ter) | Pathogenic |
| 3235109 | NM_147191.1(MMP21):c.1025_1026del (p.Lys342fs) | Pathogenic |
| 3235111 | NM_147191.1(MMP21):c.677T>C (p.Ile226Thr) | Pathogenic |
| 3235112 | NM_147191.1(MMP21):c.365del (p.Met122fs) | Pathogenic |
| 3235113 | NC_000010.11:g.125772345_125778250del | Pathogenic |
| 3235115 | NM_147191.1(MMP21):c.961G>C (p.Ala321Pro) | Pathogenic |
| 3235117 | NM_147191.1(MMP21):c.847C>T (p.His283Tyr) | Pathogenic |
| 3235118 | NM_147191.1(MMP21):c.947G>A (p.Trp316Ter) | Pathogenic |
| 3235119 | NM_147191.1(MMP21):c.854T>C (p.Ile285Thr) | Pathogenic |
| 3235120 | NM_147191.1(MMP21):c.1380_1381del (p.Lys461fs) | Pathogenic |
| 4075076 | NM_147191.1(MMP21):c.1260C>G (p.Asp420Glu) | Pathogenic |
| 1197221 | NM_147191.1(MMP21):c.356T>G (p.Val119Gly) | Likely pathogenic |
| 2507421 | NM_147191.1(MMP21):c.1303del (p.Ser435fs) | Likely pathogenic |
| 2632338 | NM_147191.1(MMP21):c.738del (p.Gln247fs) | Likely pathogenic |
| 3054546 | NM_147191.1(MMP21):c.401del (p.Pro134fs) | Likely pathogenic |
| 3062262 | NM_147191.1(MMP21):c.614G>A (p.Trp205Ter) | Likely pathogenic |
| 3779882 | NM_147191.1(MMP21):c.765dup (p.Gly256fs) | Likely pathogenic |
| 504278 | NM_147191.1(MMP21):c.1539T>G (p.Tyr513Ter) | Likely pathogenic |
| 545547 | NM_147191.1(MMP21):c.643G>A (p.Glu215Lys) | Likely pathogenic |
| 545548 | NM_147191.1(MMP21):c.557G>T (p.Ser186Ile) | Likely pathogenic |
SpliceAI
1276 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:125753689:TTTA:T | acceptor_loss | 1.0000 |
| 10:125753690:TTA:T | acceptor_loss | 1.0000 |
| 10:125753691:TAGCC:T | acceptor_loss | 1.0000 |
| 10:125753692:A:AG | acceptor_gain | 1.0000 |
| 10:125753692:AGCCT:A | acceptor_loss | 1.0000 |
| 10:125753693:G:GA | acceptor_gain | 1.0000 |
| 10:125753693:GC:G | acceptor_gain | 1.0000 |
| 10:125753693:GCCTA:G | acceptor_gain | 1.0000 |
| 10:125753843:AAGG:A | donor_loss | 1.0000 |
| 10:125753845:GGTAA:G | donor_loss | 1.0000 |
| 10:125753846:GTAA:G | donor_loss | 1.0000 |
| 10:125753847:T:A | donor_loss | 1.0000 |
| 10:125763293:A:AG | acceptor_gain | 1.0000 |
| 10:125763294:A:G | acceptor_gain | 1.0000 |
| 10:125763298:TAGC:T | acceptor_loss | 1.0000 |
| 10:125763299:A:AG | acceptor_gain | 1.0000 |
| 10:125763299:A:G | acceptor_loss | 1.0000 |
| 10:125763300:G:GG | acceptor_gain | 1.0000 |
| 10:125763300:GC:G | acceptor_gain | 1.0000 |
| 10:125763300:GCA:G | acceptor_gain | 1.0000 |
| 10:125763300:GCAAT:G | acceptor_gain | 1.0000 |
| 10:125767701:TTTC:T | acceptor_gain | 1.0000 |
| 10:125767705:C:CA | acceptor_loss | 1.0000 |
| 10:125767706:T:G | acceptor_loss | 1.0000 |
| 10:125770593:T:C | acceptor_gain | 1.0000 |
| 10:125773825:TCTTA:T | donor_loss | 1.0000 |
| 10:125773826:CTTA:C | donor_loss | 1.0000 |
| 10:125773827:TTA:T | donor_loss | 1.0000 |
| 10:125773828:TACCT:T | donor_loss | 1.0000 |
| 10:125773829:ACC:A | donor_loss | 1.0000 |
AlphaMissense
3727 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:125773838:A:C | F230L | 0.997 |
| 10:125773838:A:T | F230L | 0.997 |
| 10:125773840:A:G | F230L | 0.997 |
| 10:125773915:A:G | W205R | 0.997 |
| 10:125773915:A:T | W205R | 0.997 |
| 10:125772350:G:C | H283D | 0.996 |
| 10:125772722:G:C | F242L | 0.996 |
| 10:125772722:G:T | F242L | 0.996 |
| 10:125772723:A:C | F242C | 0.996 |
| 10:125772724:A:G | F242L | 0.996 |
| 10:125772669:A:G | F260S | 0.995 |
| 10:125773890:A:G | F213S | 0.995 |
| 10:125773913:C:A | W205C | 0.995 |
| 10:125773913:C:G | W205C | 0.995 |
| 10:125773839:A:C | F230C | 0.994 |
| 10:125772345:T:A | E284D | 0.993 |
| 10:125772345:T:G | E284D | 0.993 |
| 10:125772346:T:A | E284V | 0.993 |
| 10:125772352:A:T | V282D | 0.993 |
| 10:125772356:C:G | A281P | 0.993 |
| 10:125772651:A:G | F266S | 0.992 |
| 10:125772697:G:C | H251D | 0.992 |
| 10:125773839:A:G | F230S | 0.992 |
| 10:125772318:G:C | H293Q | 0.991 |
| 10:125772318:G:T | H293Q | 0.991 |
| 10:125772336:A:C | H287Q | 0.991 |
| 10:125772336:A:T | H287Q | 0.991 |
| 10:125772338:G:C | H287D | 0.991 |
| 10:125772340:C:T | G286D | 0.991 |
| 10:125772294:C:A | M301I | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000529565 (10:125776565 G>A), RS1000826686 (10:125776951 C>A,T), RS1000878981 (10:125776785 T>C), RS1001669636 (10:125767839 G>A,T), RS1001830297 (10:125773495 C>T), RS1002000093 (10:125766301 C>A,G,T), RS1002203966 (10:125774982 G>A,C), RS1002415019 (10:125769713 C>G,T), RS1002453606 (10:125769416 C>T), RS1002565708 (10:125772227 T>G), RS1002633825 (10:125773814 G>A,T), RS1002711601 (10:125775246 T>A), RS1002723302 (10:125769168 G>T), RS1002730672 (10:125768013 G>C), RS1002882850 (10:125774174 C>A,G,T)
Disease associations
OMIM: gene MIM:608416 | disease phenotypes: MIM:616749, MIM:306955
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| heterotaxy, visceral, 7, autosomal | Definitive | Autosomal recessive |
| situs inversus | Supportive | Autosomal dominant |
Mondo (4): heterotaxy, visceral, 7, autosomal (MONDO:0014762), visceral heterotaxy (MONDO:0018677), congenital heart disease (MONDO:0005453), situs inversus (MONDO:0010029)
Orphanet (2): Visceral heterotaxy (Orphanet:450), Situs ambiguus (Orphanet:157769)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009391_209 | Metabolite levels | 2.000000e-06 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
| D012857 | Situs Inversus | C16.131.810 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — M10: Matrix metallopeptidase
CTD chemical–gene interactions
7 total (human), top 7 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| tebuconazole | decreases expression | 1 |
| Tetradecanoylphorbol Acetate | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Okadaic Acid | increases expression | 1 |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
| NCT00115375 | PHASE2 | COMPLETED | Platelet Aggregation Inhibition in Children on Clopidogrel (PICOLO) |
| NCT00350220 | PHASE2 | COMPLETED | Transfusion Strategies in Pediatric Cardiothoracic Surgery |
| NCT00374088 | PHASE2 | COMPLETED | N-Acetylcysteine in Neonatal Congenital Heart Surgery (INACT Study) |
| NCT00538785 | PHASE2 | COMPLETED | A Study to Evaluate MEDI-524 In Children With Hemodynamically Significant Congenital Heart Disease |
| NCT00770705 | PHASE2 | WITHDRAWN | Parenteral Phenoxybenzamine During Congenital Heart Disease Surgery |
| NCT00919945 | PHASE2 | TERMINATED | Impact of Early Enteral Feeding on Splanchnic Blood Flow After Surgery for Critical Heart Disease in the Newborn |
| NCT01063712 | PHASE2 | COMPLETED | Safety and Effectiveness of the Device Nit-Occlud® PDA-R |
| NCT01069510 | PHASE2 | COMPLETED | Spironolactone in Adult Congenital Heart Disease |
| NCT01189981 | PHASE2 | COMPLETED | Effect of eHealth Encouragements to Intensive Exercise in Adolescents With Congenital Heart Disease |
| NCT01330433 | PHASE2 | COMPLETED | Effects of CoSeal on Bleeding & Adhesions in Pediatric Heart Surgery |
| NCT01662037 | PHASE2 | COMPLETED | Bosentan Therapy in Children With Functional Single Ventricle |
| NCT01668264 | PHASE2 | UNKNOWN | Imaging Assessment of Diastolic Function |
| NCT01827059 | PHASE2 | UNKNOWN | Bosentan In Exercise Induced Pulmonary Arterial Hypertension in CongenitaL Heart diseasE |
Related Atlas pages
- Associated diseases: heterotaxy, visceral, 7, autosomal, situs inversus
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): heterotaxy, visceral, 7, autosomal, situs inversus, visceral heterotaxy