MMRN1
gene geneOn this page
Also known as ECMEMILIN4GPIa*
Summary
MMRN1 (multimerin 1, HGNC:7178) is a protein-coding gene on chromosome 4q22.1, encoding Multimerin-1 (Q13201). Carrier protein for platelet (but not plasma) factor V/Va.
Multimerin is a massive, soluble protein found in platelets and in the endothelium of blood vessels. It is comprised of subunits linked by interchain disulfide bonds to form large, variably sized homomultimers. Multimerin is a factor V/Va-binding protein and may function as a carrier protein for platelet factor V. It may also have functions as an extracellular matrix or adhesive protein. Recently, patients with an unusual autosomal-dominant bleeding disorder (factor V Quebec) were found to have a deficiency of platelet multimerin.
Source: NCBI Gene 22915 — RefSeq curated summary.
At a glance
- Gene–disease (curated): male infertility with azoospermia or oligozoospermia due to single gene mutation (Moderate, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 201 total
- MANE Select transcript:
NM_007351
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7178 |
| Approved symbol | MMRN1 |
| Name | multimerin 1 |
| Location | 4q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ECM, EMILIN4, GPIa* |
| Ensembl gene | ENSG00000138722 |
| Ensembl biotype | protein_coding |
| OMIM | 601456 |
| Entrez | 22915 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 6 protein_coding, 1 retained_intron
ENST00000264790, ENST00000394980, ENST00000506328, ENST00000508372, ENST00000877494, ENST00000877495, ENST00000955234
RefSeq mRNA: 3 — MANE Select: NM_007351
NM_001371403, NM_001410735, NM_007351
CCDS: CCDS3635, CCDS93560
Canonical transcript exons
ENST00000264790 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001003940 | 89923168 | 89923272 |
| ENSE00001003943 | 89951605 | 89951751 |
| ENSE00001003944 | 89894854 | 89895594 |
| ENSE00001071501 | 89934810 | 89936798 |
| ENSE00001071503 | 89927795 | 89927968 |
| ENSE00001236604 | 89952997 | 89954614 |
| ENSE00003662925 | 89909276 | 89909395 |
| ENSE00003690869 | 89911944 | 89912050 |
Expression profiles
Bgee: expression breadth ubiquitous, 208 present calls, max score 91.81.
FANTOM5 (CAGE): breadth broad, TPM avg 10.9851 / max 1365.2109, expressed in 447 samples.
FANTOM5 promoters (19 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 48847 | 4.6885 | 269 |
| 48849 | 3.7726 | 258 |
| 48842 | 0.9933 | 124 |
| 48848 | 0.9188 | 174 |
| 48840 | 0.0931 | 45 |
| 48851 | 0.0793 | 34 |
| 48843 | 0.0657 | 39 |
| 48844 | 0.0657 | 40 |
| 48841 | 0.0632 | 34 |
| 48852 | 0.0456 | 21 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pericardium | UBERON:0002407 | 91.81 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 91.69 | gold quality |
| left uterine tube | UBERON:0001303 | 91.57 | gold quality |
| gall bladder | UBERON:0002110 | 90.27 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 90.04 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 89.72 | gold quality |
| decidua | UBERON:0002450 | 89.34 | gold quality |
| ectocervix | UBERON:0012249 | 89.13 | gold quality |
| thyroid gland | UBERON:0002046 | 88.58 | gold quality |
| calcaneal tendon | UBERON:0003701 | 87.30 | gold quality |
| endocervix | UBERON:0000458 | 87.26 | gold quality |
| right lung | UBERON:0002167 | 86.92 | gold quality |
| rectum | UBERON:0001052 | 85.65 | gold quality |
| omental fat pad | UBERON:0010414 | 85.55 | gold quality |
| peritoneum | UBERON:0002358 | 85.43 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 85.18 | gold quality |
| body of uterus | UBERON:0009853 | 85.01 | gold quality |
| urethra | UBERON:0000057 | 84.90 | gold quality |
| upper lobe of lung | UBERON:0008948 | 84.86 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 83.77 | gold quality |
| left coronary artery | UBERON:0001626 | 83.38 | gold quality |
| islet of Langerhans | UBERON:0000006 | 83.23 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 83.16 | gold quality |
| lower lobe of lung | UBERON:0008949 | 83.05 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 82.59 | gold quality |
| superficial temporal artery | UBERON:0001614 | 82.38 | gold quality |
| monocyte | CL:0000576 | 82.05 | gold quality |
| mucosa of stomach | UBERON:0001199 | 81.43 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 81.31 | gold quality |
| mononuclear cell | CL:0000842 | 81.24 | gold quality |
Single-cell (SCXA)
Detected in 20 experiment(s), a significant marker in 20.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9543 | yes | 11586.51 |
| E-CURD-88 | yes | 4203.55 |
| E-ANND-2 | yes | 3044.68 |
| E-GEOD-130148 | yes | 2406.13 |
| E-HCAD-15 | yes | 1834.38 |
| E-MTAB-8142 | yes | 1626.61 |
| E-GEOD-135922 | yes | 1498.08 |
| E-MTAB-6308 | yes | 855.17 |
| E-CURD-112 | yes | 504.92 |
| E-GEOD-93593 | yes | 429.86 |
| E-MTAB-6701 | yes | 31.12 |
| E-HCAD-1 | yes | 25.66 |
| E-CURD-46 | yes | 18.78 |
| E-HCAD-10 | yes | 16.30 |
| E-MTAB-8410 | yes | 15.60 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SP1
miRNA regulators (miRDB)
88 targeting MMRN1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-613 | 99.91 | 71.50 | 1710 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
Literature-anchored findings (GeneRIF, showing 12)
- multimerin 1 has a role in delivering and localizing factor V onto platelets prior to prothrombinase assembly (PMID:15452129)
- disulfide-linked complexes of multimerin and factor V in platelets could be important for modulating the function of platelet factor V and its delivery onto activated platelets (PMID:15583744)
- MMRN1 is a ligand for alphaIIbbeta3 and alphavbeta3 (PMID:16363244)
- The MMRN1 binding site was located in Factor V. (PMID:18452976)
- Multimerin 1 binds factor V and activated factor V with high affinity and inhibits thrombin generation. (PMID:19132231)
- MMRN1 supported the adhesion of activated, but not resting, washed platelets over a wide range of shear rates (PMID:19175495)
- our studies identify MMRN1 expression as a novel biomarker that may refine acute myelogenous leukemia risk stratification. (PMID:25825478)
- Lower levels of anti-elastin are related to CAD [ coronary artery disease ] (PMID:26446635)
- VWF binding to MMRN1 was enhanced by shear exposure and ristocetin, and required VWF A1A2A3 region, specifically the A1 and A3 domains. (PMID:27052467)
- MMRN1 expression in healthy human palatal mucosa is strongly negatively correlated with serum cotinine levels. (PMID:31682009)
- Analysis of Multimerin 1 (MMRN1) expression in ovarian cancer. (PMID:33263168)
- Multimerin 1 aids in the progression of ovarian cancer possibly via modulation of DNA damage response and repair pathways. (PMID:36723821)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Mmrn1 | ENSMUSG00000054641 |
| rattus_norvegicus | Mmrn1 | ENSRNOG00000024986 |
Paralogs (4): EMILIN2 (ENSG00000132205), EMILIN1 (ENSG00000138080), MMRN2 (ENSG00000173269), EMILIN3 (ENSG00000183798)
Protein
Protein identifiers
Multimerin-1 — Q13201 (reviewed: Q13201)
Alternative names: EMILIN-4, Elastin microfibril interface located protein 4, Endothelial cell multimerin
All UniProt accessions (2): Q13201, E7EPG1
UniProt curated annotations — full annotation on UniProt →
Function. Carrier protein for platelet (but not plasma) factor V/Va. Plays a role in the storage and stabilization of factor V in platelets. Upon release following platelet activation, may limit platelet and plasma factor Va-dependent thrombin generation. Ligand for integrin alpha-IIb/beta-3 and integrin alpha-V/beta-3 on activated platelets, and may function as an extracellular matrix or adhesive protein.
Subunit / interactions. Multimeric. Composed of varying sized, disulfide-linked multimers, the smallest of which is a homotrimer. Proteolysis of the promultimerin in the N-terminal region, leads to the mature p155 form that is stored in platelets. Interacts with factor V/Va.
Subcellular location. Secreted.
Tissue specificity. Synthesized by endothelial cells and megakaryocytes. Stored in platelet alpha granules and endothelial cell Weibel-Palade bodies, following activation of these cells, it is released and attached to megakaryocytes, platelets, endothelium and subendothelium of blood vessels. Not found in plasma. Found in vascular tissues such as placenta, lung, and liver.
Post-translational modifications. The N-terminus is blocked. Extensively N-glycosylated. O-fucosylated within the EMI domain (at Thr-216 and Thr-265) by POFUT3 and POFUT4. O-fucosylation at Thr-216 and Thr-1055 are required for facilitating protein folding and secretion.
Disease relevance. Deficiency in multimerin-1 due to proteolytic degradation within the platelet alpha granules is associated with an autosomal dominant bleeding disorder (factor V Quebec).
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13201-1 | 1 | yes |
| Q13201-2 | 2 |
RefSeq proteins (3): NP_001358332, NP_001397664, NP_031377* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000742 | EGF | Domain |
| IPR001073 | C1q_dom | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR008983 | Tumour_necrosis_fac-like_dom | Homologous_superfamily |
| IPR011489 | EMI_domain | Domain |
| IPR050392 | Collagen/C1q_domain | Family |
Pfam: PF00008, PF00386, PF07546
UniProt features (63 total): glycosylation site 26, coiled-coil region 6, disulfide bond 6, sequence variant 4, chain 3, compositionally biased region 3, domain 3, mutagenesis site 3, sequence conflict 3, splice variant 2, region of interest 2, signal peptide 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13201-F1 | 57.34 | 0.05 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (6): 211–272, 238–245, 271–280, 1045–1056, 1050–1065, 1067–1076
Glycosylation sites (26): 21, 97, 114, 120, 136, 216, 265, 344, 431, 507, 541, 576, 618, 680, 729, 783, 816, 828, 840, 921 …
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 216 | strongly reduced protein secretion. |
| 265 | does not significantly affect protein secretion. |
| 1055 | abolishes protein secretion. |
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-5173105 | O-linked glycosylation |
| R-HSA-109582 | Hemostasis |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
MSigDB gene sets: 204 (showing top):
GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_REGULATION_OF_WOUND_HEALING, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GOBP_NEGATIVE_REGULATION_OF_BLOOD_VESSEL_ENDOTHELIAL_CELL_MIGRATION, GOBP_PLATELET_ACTIVATION, GOBP_CELL_MIGRATION_INVOLVED_IN_SPROUTING_ANGIOGENESIS, GOBP_VASCULAR_ENDOTHELIAL_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, GOBP_POSITIVE_REGULATION_OF_CELL_ADHESION, GOBP_WOUND_HEALING, GOBP_CELL_CELL_ADHESION, GOBP_BLOOD_VESSEL_ENDOTHELIAL_CELL_MIGRATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_REGULATION_OF_PLATELET_AGGREGATION
GO Biological Process (7): cell adhesion (GO:0007155), blood coagulation (GO:0007596), negative regulation of vascular endothelial growth factor receptor signaling pathway (GO:0030948), cell adhesion mediated by integrin (GO:0033627), negative regulation of wound healing (GO:0061045), negative regulation of cell migration involved in sprouting angiogenesis (GO:0090051), positive regulation of platelet aggregation (GO:1901731)
GO Molecular Function (3): calcium ion binding (GO:0005509), extracellular matrix structural constituent (GO:0005201), protein binding (GO:0005515)
GO Cellular Component (6): extracellular region (GO:0005576), endoplasmic reticulum lumen (GO:0005788), extracellular matrix (GO:0031012), platelet alpha granule (GO:0031091), platelet alpha granule lumen (GO:0031093), multimerin complex (GO:1990972)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Post-translational protein modification | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| wound healing | 2 |
| cellular process | 1 |
| hemostasis | 1 |
| coagulation | 1 |
| negative regulation of signal transduction | 1 |
| regulation of vascular endothelial growth factor receptor signaling pathway | 1 |
| vascular endothelial growth factor receptor signaling pathway | 1 |
| negative regulation of cellular response to growth factor stimulus | 1 |
| cell adhesion | 1 |
| negative regulation of response to external stimulus | 1 |
| regulation of wound healing | 1 |
| negative regulation of response to wounding | 1 |
| cell migration involved in sprouting angiogenesis | 1 |
| negative regulation of blood vessel endothelial cell migration | 1 |
| regulation of cell migration involved in sprouting angiogenesis | 1 |
| positive regulation of homotypic cell-cell adhesion | 1 |
| platelet aggregation | 1 |
| regulation of platelet aggregation | 1 |
| metal ion binding | 1 |
| structural molecule activity | 1 |
| extracellular matrix | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| endoplasmic reticulum | 1 |
| intracellular organelle lumen | 1 |
| external encapsulating structure | 1 |
| secretory granule | 1 |
| platelet alpha granule | 1 |
| secretory granule lumen | 1 |
| elastic fiber | 1 |
| protein complex involved in cell-matrix adhesion | 1 |
| extracellular protein-containing complex | 1 |
Protein interactions and networks
STRING
960 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MMRN1 | VWF | P04275 | 648 |
| MMRN1 | F5 | P12259 | 574 |
| MMRN1 | SMIM24 | O75264 | 508 |
| MMRN1 | ITGA2B | P08514 | 492 |
| MMRN1 | SERPINE1 | P05121 | 479 |
| MMRN1 | NYNRIN | Q9P2P1 | 478 |
| MMRN1 | TGFB1 | P01137 | 462 |
| MMRN1 | THBS1 | P07996 | 458 |
| MMRN1 | VTN | P01141 | 446 |
| MMRN1 | ACTN1 | P12814 | 446 |
| MMRN1 | CPXM1 | Q96SM3 | 440 |
| MMRN1 | AHSG | P02765 | 437 |
| MMRN1 | IGF1 | P01343 | 428 |
| MMRN1 | FN1 | P02751 | 422 |
| MMRN1 | TRIB1 | Q96RU8 | 418 |
IntAct
14 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MMRN1 | CTSV | psi-mi:“MI:0914”(association) | 0.530 |
| MMRN1 | ZGRF1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MMRN1 | H1-2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MMRN1 | H1-5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GATA3 | PRMT5 | psi-mi:“MI:0914”(association) | 0.350 |
| PLG | psi-mi:“MI:0914”(association) | 0.350 | |
| FN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| SELP | psi-mi:“MI:0914”(association) | 0.350 | |
| CDKN2A | ACTN4 | psi-mi:“MI:0914”(association) | 0.350 |
| CCN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| CDH5 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CDH5 | MYO1C | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (47): CST6 (Affinity Capture-MS), RNASE7 (Affinity Capture-MS), F5 (Affinity Capture-MS), ACPP (Affinity Capture-MS), CTSH (Affinity Capture-MS), CDSN (Affinity Capture-MS), S100A7 (Affinity Capture-MS), ECM1 (Affinity Capture-MS), CTSV (Affinity Capture-MS), APOE (Affinity Capture-MS), KPRP (Affinity Capture-MS), F5 (Affinity Capture-MS), APOE (Affinity Capture-MS), ACPP (Affinity Capture-MS), ECM1 (Affinity Capture-MS)
ESM2 similar proteins: A2VE00, A2VE53, A2XW69, A5PMY6, A6QP79, B2RPV6, F1QC17, F7DP49, O75071, Q07065, Q0II90, Q13201, Q2LK54, Q32L59, Q3UIJ9, Q4V7C8, Q4V885, Q53EZ4, Q5BIX7, Q5EAJ6, Q5EB94, Q5KU26, Q5R6R3, Q5R923, Q5RI56, Q5ZM60, Q61595, Q640L3, Q6AZY7, Q6NRC9, Q6P6L0, Q70UQ0, Q7XU27, Q7Z7B0, Q84VY2, Q8BGQ6, Q8BIS8, Q8BMK4, Q8BT07, Q8BVC4
Diamond homologs: A6H6E2, F1QC17, P59900, Q13201, Q8K482, Q91VF6, Q96A83, Q96A84, Q99K41, Q9BXX0, Q9H8L6, Q9NT22, Q9Y6C2, B2RPV6, Q5RJ80, Q8BVD7, Q91VF5, Q9BXJ2, Q9W332, A0A060WQA3, A5PN28, A6NHN0, B2RNN3, O75973, O88992, P02745, P02746, P08125, P0C862, P23206, P23435, P63182, P83371, P86437, P98085, P98087, Q03692, Q05306, Q05A80, Q06577
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
201 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 176 |
| Likely benign | 10 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1443 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:89927787:A:AG | acceptor_gain | 1.0000 |
| 4:89927787:ATAT:A | acceptor_gain | 1.0000 |
| 4:89927788:T:G | acceptor_gain | 1.0000 |
| 4:89927789:A:AG | acceptor_gain | 1.0000 |
| 4:89927789:AT:A | acceptor_gain | 1.0000 |
| 4:89927790:T:G | acceptor_gain | 1.0000 |
| 4:89927790:T:TA | acceptor_gain | 1.0000 |
| 4:89927790:TGCAG:T | acceptor_loss | 1.0000 |
| 4:89927793:A:AG | acceptor_gain | 1.0000 |
| 4:89927793:A:C | acceptor_loss | 1.0000 |
| 4:89927794:G:GC | acceptor_gain | 1.0000 |
| 4:89927794:GA:G | acceptor_gain | 1.0000 |
| 4:89927794:GAA:G | acceptor_gain | 1.0000 |
| 4:89927794:GAAGT:G | acceptor_gain | 1.0000 |
| 4:89927964:AAAAG:A | donor_loss | 1.0000 |
| 4:89927965:AAAGG:A | donor_loss | 1.0000 |
| 4:89927966:AAGGT:A | donor_loss | 1.0000 |
| 4:89927967:AGGTA:A | donor_loss | 1.0000 |
| 4:89927968:GGT:G | donor_loss | 1.0000 |
| 4:89927969:G:GC | donor_loss | 1.0000 |
| 4:89927970:T:G | donor_loss | 1.0000 |
| 4:89951597:C:A | acceptor_gain | 1.0000 |
| 4:89951600:A:AG | acceptor_gain | 1.0000 |
| 4:89951603:A:AG | acceptor_gain | 1.0000 |
| 4:89951603:AGAG:A | acceptor_gain | 1.0000 |
| 4:89951604:G:GG | acceptor_gain | 1.0000 |
| 4:89951604:GAGG:G | acceptor_gain | 1.0000 |
| 4:89951604:GAGGA:G | acceptor_gain | 1.0000 |
| 4:89952995:A:AG | acceptor_gain | 1.0000 |
| 4:89952996:G:GG | acceptor_gain | 1.0000 |
AlphaMissense
8125 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:89912007:G:C | W269C | 0.999 |
| 4:89912007:G:T | W269C | 0.999 |
| 4:89912005:T:A | W269R | 0.998 |
| 4:89912005:T:C | W269R | 0.998 |
| 4:89909283:T:A | C211S | 0.997 |
| 4:89909284:G:C | C211S | 0.997 |
| 4:89912011:T:A | C271S | 0.997 |
| 4:89912011:T:C | C271R | 0.997 |
| 4:89912012:G:C | C271S | 0.997 |
| 4:89912038:T:A | C280S | 0.997 |
| 4:89912039:G:C | C280S | 0.997 |
| 4:89951712:T:A | C1076S | 0.997 |
| 4:89951713:G:C | C1076S | 0.997 |
| 4:89951714:C:G | C1076W | 0.997 |
| 4:89909282:G:C | W210C | 0.996 |
| 4:89909282:G:T | W210C | 0.996 |
| 4:89912013:C:G | C271W | 0.996 |
| 4:89951679:T:C | C1065R | 0.996 |
| 4:89951712:T:C | C1076R | 0.996 |
| 4:89951713:G:A | C1076Y | 0.996 |
| 4:89953158:G:A | G1143R | 0.996 |
| 4:89953158:G:C | G1143R | 0.996 |
| 4:89909285:T:G | C211W | 0.995 |
| 4:89912014:T:C | C272R | 0.995 |
| 4:89912038:T:C | C280R | 0.995 |
| 4:89951685:T:C | C1067R | 0.995 |
| 4:89909283:T:C | C211R | 0.994 |
| 4:89912012:G:A | C271Y | 0.994 |
| 4:89912014:T:A | C272S | 0.994 |
| 4:89912015:G:C | C272S | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000011673 (4:89938850 A>G), RS1000074317 (4:89900145 A>C), RS1000076779 (4:89880950 C>A,T), RS1000083900 (4:89934538 G>A,C), RS10001067 (4:89897065 C>G,T), RS1000149897 (4:89904866 C>T), RS1000222336 (4:89913662 C>T), RS1000262266 (4:89922557 T>A,C), RS1000263931 (4:89877552 T>C), RS1000339524 (4:89916145 G>A), RS1000342260 (4:89922731 A>G), RS1000344797 (4:89894449 G>T), RS1000376921 (4:89910365 C>T), RS1000384869 (4:89888782 A>C,G), RS1000434294 (4:89916876 C>T)
Disease associations
OMIM: gene MIM:601456 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| male infertility with azoospermia or oligozoospermia due to single gene mutation | Moderate | Autosomal recessive |
Mondo (1): (MONDO:0018393)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000528_9 | Parkinson’s disease | 1.000000e-07 |
| GCST008522_77 | Bitter alcoholic beverage consumption | 5.000000e-06 |
| GCST90000025_275 | Appendicular lean mass | 3.000000e-10 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010092 | bitter alcoholic beverage consumption measurement |
| EFO:0004980 | appendicular lean mass |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 5 |
| trichostatin A | increases expression, affects cotreatment | 3 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| 2,4,6-tribromophenol | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| pentabrominated diphenyl ether 100 | increases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| 2,6-dichloro-(1,4)benzoquinone | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Progesterone | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Medroxyprogesterone Acetate | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1XC | Abcam HeLa MMRN1 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.