MMRN2
gene geneOn this page
Also known as EndoGlyx-1FLJ13465
Summary
MMRN2 (multimerin 2, HGNC:19888) is a protein-coding gene on chromosome 10q23.2, encoding Multimerin-2 (Q9H8L6). Extracellular matrix protein that plays significant roles in the vascular system and is required for the maintenance and stability of blood vessel.
This gene encodes a protein belonging to the member of elastin microfibril interface-located (EMILIN) protein family. This family member is an extracellular matrix glycoprotein that can interfere with tumor angiogenesis and growth. It serves as a transforming growth factor beta antagonist and can interfere with the VEGF-A/VEGFR2 pathway. A related pseudogene has been identified on chromosome 6.
Source: NCBI Gene 79812 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 319 total
- MANE Select transcript:
NM_024756
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19888 |
| Approved symbol | MMRN2 |
| Name | multimerin 2 |
| Location | 10q23.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EndoGlyx-1, FLJ13465 |
| Ensembl gene | ENSG00000173269 |
| Ensembl biotype | protein_coding |
| OMIM | 608925 |
| Entrez | 79812 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 9 protein_coding, 1 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000372027, ENST00000474994, ENST00000488950, ENST00000608090, ENST00000608753, ENST00000609457, ENST00000610081, ENST00000896187, ENST00000896188, ENST00000896189, ENST00000896190, ENST00000896191
RefSeq mRNA: 1 — MANE Select: NM_024756
NM_024756
CCDS: CCDS7379
Canonical transcript exons
ENST00000372027 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001210182 | 86942317 | 86944128 |
| ENSE00001210186 | 86944262 | 86944435 |
| ENSE00001858285 | 86935540 | 86937125 |
| ENSE00003350406 | 86945188 | 86945268 |
| ENSE00003386540 | 86945370 | 86945476 |
| ENSE00003688241 | 86945561 | 86945689 |
| ENSE00003704170 | 86957378 | 86957615 |
Expression profiles
Bgee: expression breadth ubiquitous, 259 present calls, max score 94.63.
FANTOM5 (CAGE): breadth broad, TPM avg 7.6368 / max 257.9862, expressed in 425 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 110419 | 5.2466 | 351 |
| 110418 | 1.9405 | 285 |
| 187282 | 0.8789 | 378 |
| 110420 | 0.3233 | 150 |
| 110422 | 0.0966 | 51 |
| 110421 | 0.0298 | 8 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| subcutaneous adipose tissue | UBERON:0002190 | 94.63 | gold quality |
| omental fat pad | UBERON:0010414 | 94.08 | gold quality |
| peritoneum | UBERON:0002358 | 94.03 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 94.03 | gold quality |
| adipose tissue | UBERON:0001013 | 93.84 | gold quality |
| apex of heart | UBERON:0002098 | 93.15 | gold quality |
| connective tissue | UBERON:0002384 | 92.99 | gold quality |
| pericardium | UBERON:0002407 | 92.69 | gold quality |
| endothelial cell | CL:0000115 | 92.10 | gold quality |
| urethra | UBERON:0000057 | 91.37 | gold quality |
| sural nerve | UBERON:0015488 | 91.01 | gold quality |
| superficial temporal artery | UBERON:0001614 | 90.39 | gold quality |
| heart left ventricle | UBERON:0002084 | 90.11 | gold quality |
| cardiac ventricle | UBERON:0002082 | 90.05 | gold quality |
| mucosa of stomach | UBERON:0001199 | 89.95 | gold quality |
| visceral pleura | UBERON:0002401 | 89.92 | gold quality |
| parietal pleura | UBERON:0002400 | 89.73 | gold quality |
| body of uterus | UBERON:0009853 | 89.65 | gold quality |
| right coronary artery | UBERON:0001625 | 89.61 | gold quality |
| pleura | UBERON:0000977 | 89.54 | gold quality |
| vena cava | UBERON:0004087 | 89.54 | gold quality |
| seminal vesicle | UBERON:0000998 | 89.21 | gold quality |
| left uterine tube | UBERON:0001303 | 89.18 | gold quality |
| heart | UBERON:0000948 | 89.07 | gold quality |
| tibial artery | UBERON:0007610 | 89.03 | gold quality |
| popliteal artery | UBERON:0002250 | 88.99 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 88.92 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 88.83 | gold quality |
| tibial nerve | UBERON:0001323 | 88.79 | gold quality |
| left coronary artery | UBERON:0001626 | 88.74 | gold quality |
Single-cell (SCXA)
Detected in 9 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-130473 | yes | 369.38 |
| E-MTAB-10287 | yes | 64.43 |
| E-GEOD-135922 | yes | 47.12 |
| E-HCAD-11 | yes | 43.90 |
| E-MTAB-8410 | yes | 29.48 |
| E-MTAB-9067 | yes | 6.85 |
| E-MTAB-5061 | yes | 5.79 |
| E-CURD-112 | yes | 4.00 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
63 targeting MMRN2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-LET-7A-2-3P | 99.87 | 70.53 | 1921 |
| HSA-MIR-3151-5P | 99.86 | 63.83 | 1069 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-LET-7G-3P | 99.85 | 70.43 | 1929 |
| HSA-MIR-623 | 99.76 | 68.16 | 1170 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-298 | 99.63 | 67.56 | 1916 |
| HSA-MIR-7150 | 99.62 | 66.80 | 1322 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-6513-3P | 99.59 | 69.77 | 1102 |
| HSA-MIR-3682-3P | 99.58 | 67.63 | 865 |
| HSA-MIR-766-5P | 99.47 | 67.91 | 2225 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-4667-3P | 99.26 | 65.45 | 1608 |
| HSA-MIR-122B-3P | 99.21 | 68.90 | 1333 |
| HSA-MIR-21-3P | 99.21 | 68.95 | 1312 |
| HSA-MIR-6852-5P | 99.17 | 66.69 | 2073 |
| HSA-MIR-491-5P | 99.13 | 65.98 | 1468 |
| HSA-MIR-6809-5P | 99.13 | 68.45 | 1223 |
| HSA-MIR-1253 | 99.12 | 67.08 | 1688 |
| HSA-MIR-4434 | 99.10 | 67.01 | 1984 |
| HSA-MIR-5703 | 99.10 | 67.09 | 2053 |
Literature-anchored findings (GeneRIF, showing 6)
- CLEC14A is a matrix component which binds to MMRN2 in the process of endothelial cells transformation in tumor angiogenesis. (PMID:23979707)
- Results suggest that CLEC14A-MMRN2 binding has a role in inducing sprouting angiogenesis during tumor growth, which has the potential to be manipulated in future antiangiogenic therapy design. (PMID:25745997)
- These findings identify novel protein interactions involving CLEC14A, CD93 and CD248 with MMRN2 as targetable components of vessel formation (PMID:28671670)
- Data identify MMRN2 as a specific ligand for CD93. CD93 and MMRN2 are co-expressed in the blood vessels of various tumors. Moreover, disruption of the CD93-MMRN2 interaction reduced endothelial cell adhesion and migration. Site-directed mutagenesis identified different residue hotspots either directly or indirectly involved in the binding and propose a molecular model in which the coiled-coil domain of MMRN2 is engaged. (PMID:28912033)
- Loss of Multimerin-2 and EMILIN-2 Expression in Gastric Cancer Associate with Altered Angiogenesis (PMID:30544909)
- Multimerin-2 maintains vascular stability and permeability. (PMID:31422156)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mmrn2b | ENSDARG00000073711 |
| danio_rerio | mmrn2a | ENSDARG00000076135 |
| mus_musculus | Mmrn2 | ENSMUSG00000041445 |
| rattus_norvegicus | Mmrn2 | ENSRNOG00000051977 |
Paralogs (4): EMILIN2 (ENSG00000132205), EMILIN1 (ENSG00000138080), MMRN1 (ENSG00000138722), EMILIN3 (ENSG00000183798)
Protein
Protein identifiers
Multimerin-2 — Q9H8L6 (reviewed: Q9H8L6)
Alternative names: EMILIN-3, Elastin microfibril interface located protein 3, EndoGlyx-1 p125/p140 subunit
All UniProt accessions (5): Q9H8L6, R4GMY6, V9GY37, V9GY43, V9GYS9
UniProt curated annotations — full annotation on UniProt →
Function. Extracellular matrix protein that plays significant roles in the vascular system and is required for the maintenance and stability of blood vessel. Affects several essential steps in angiogenesis including endothelial cell proliferation, migration, and tube formation. Positively regulates angiogenesis by acting as a ligand for CD93 receptor.
Subunit / interactions. Heteromer of p110, p125, p140 and p200 subunits; disulfide-linked. Interacts with VEGFA. Interacts with CD93; this interaction promotes angiogenesis. Interacts with CD248.
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Tissue specificity. Endothelium.
Post-translational modifications. N- and O-glycosylated. O-fucosylated within the EMI domain (at Ser-63, Thr-67 and Thr-115) by POFUT3 and POFUT4. Processed by matrix metalloproteinases (MMPs) including MMP9 and, to a lesser degree, by MMP2 upon angiogenic stimulation.
RefSeq proteins (1): NP_079032* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001073 | C1q_dom | Domain |
| IPR008983 | Tumour_necrosis_fac-like_dom | Homologous_superfamily |
| IPR011489 | EMI_domain | Domain |
| IPR050392 | Collagen/C1q_domain | Family |
Pfam: PF00386, PF07546
UniProt features (34 total): glycosylation site 14, sequence variant 5, coiled-coil region 4, disulfide bond 3, domain 2, region of interest 2, signal peptide 1, chain 1, compositionally biased region 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H8L6-F1 | 66.64 | 0.09 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (3): 58–122, 85–92, 121–130
Glycosylation sites (14): 63, 67, 115, 205, 214, 249, 261, 350, 379, 439, 472, 727, 765, 845
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5173105 | O-linked glycosylation |
MSigDB gene sets: 257 (showing top):
GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, AP1_01, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_NEGATIVE_REGULATION_OF_BLOOD_VESSEL_ENDOTHELIAL_CELL_MIGRATION, GOBP_CELL_MIGRATION_INVOLVED_IN_SPROUTING_ANGIOGENESIS, GOBP_VASCULAR_ENDOTHELIAL_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, AP4_Q6, HEIDENBLAD_AMPLICON_8Q24_DN, CAGCTG_AP4_Q5, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, CAIRO_HEPATOBLASTOMA_CLASSES_DN, GOBP_BLOOD_VESSEL_ENDOTHELIAL_CELL_MIGRATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS
GO Biological Process (12): angiogenesis (GO:0001525), cell migration involved in sprouting angiogenesis (GO:0002042), cell adhesion (GO:0007155), negative regulation of cell population proliferation (GO:0008285), negative regulation of cell migration (GO:0030336), negative regulation of vascular endothelial growth factor receptor signaling pathway (GO:0030948), negative regulation of cell migration involved in sprouting angiogenesis (GO:0090051), positive regulation of defense response to bacterium (GO:1900426), negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis (GO:1903588), positive regulation of epithelial tube formation (GO:1905278), positive regulation of morphogenesis of an epithelium (GO:1905332), signal transduction (GO:0007165)
GO Molecular Function (3): receptor ligand activity (GO:0048018), extracellular matrix structural constituent (GO:0005201), protein binding (GO:0005515)
GO Cellular Component (7): basement membrane (GO:0005604), obsolete extracellular space (GO:0005615), endoplasmic reticulum lumen (GO:0005788), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062), multimerin complex (GO:1990972), extracellular region (GO:0005576)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 2 |
| extracellular matrix | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| sprouting angiogenesis | 1 |
| blood vessel endothelial cell migration | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| negative regulation of cell motility | 1 |
| negative regulation of signal transduction | 1 |
| regulation of vascular endothelial growth factor receptor signaling pathway | 1 |
| vascular endothelial growth factor receptor signaling pathway | 1 |
| negative regulation of cellular response to growth factor stimulus | 1 |
| cell migration involved in sprouting angiogenesis | 1 |
| negative regulation of blood vessel endothelial cell migration | 1 |
| regulation of cell migration involved in sprouting angiogenesis | 1 |
| positive regulation of response to biotic stimulus | 1 |
| positive regulation of defense response | 1 |
| positive regulation of response to external stimulus | 1 |
| defense response to bacterium | 1 |
| regulation of defense response to bacterium | 1 |
| negative regulation of endothelial cell proliferation | 1 |
| blood vessel endothelial cell proliferation involved in sprouting angiogenesis | 1 |
| regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis | 1 |
| positive regulation of multicellular organismal process | 1 |
| epithelial tube formation | 1 |
| regulation of epithelial tube formation | 1 |
| positive regulation of morphogenesis of an epithelium | 1 |
| morphogenesis of an epithelium | 1 |
| positive regulation of developmental process | 1 |
| regulation of morphogenesis of an epithelium | 1 |
| cell communication | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| signaling receptor binding | 1 |
| signal transduction | 1 |
Protein interactions and networks
STRING
1299 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MMRN2 | CLEC14A | Q86T13 | 864 |
| MMRN2 | FAM25A | B3EWG3 | 468 |
| MMRN2 | CD93 | Q9NPY3 | 460 |
| MMRN2 | EMID1 | Q96A84 | 441 |
| MMRN2 | FKBPL | Q9UIM3 | 434 |
| MMRN2 | AGRN | O00468 | 421 |
| MMRN2 | CD248 | Q9HCU0 | 412 |
| MMRN2 | VWA1 | Q6PCB0 | 409 |
| MMRN2 | TSPAN4 | O14817 | 393 |
| MMRN2 | PTK2 | Q05397 | 391 |
| MMRN2 | NHSL2 | Q5HYW2 | 390 |
| MMRN2 | ITGA6 | P23229 | 383 |
| MMRN2 | CTIF | O43310 | 379 |
| MMRN2 | TMEM237 | Q96Q45 | 370 |
| MMRN2 | MC2R | Q01718 | 369 |
IntAct
11 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RHBDD2 | MMRN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CVC2 | MMRN2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MMRN2 | VDR | psi-mi:“MI:0915”(physical association) | 0.370 |
| MMRN2 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| CCN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| ATG16L1 | psi-mi:“MI:0914”(association) | 0.350 | |
| CDH5 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CDH5 | MYO1C | psi-mi:“MI:2364”(proximity) | 0.270 |
| MMRN2 | RHBDD2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (10): MMRN2 (Affinity Capture-MS), MMRN2 (Affinity Capture-Western), MMRN2 (Two-hybrid), MMRN2 (Affinity Capture-Western), MMRN2 (Reconstituted Complex), MMRN2 (Co-localization), MMRN2 (Affinity Capture-RNA), MMRN2 (Biochemical Activity), MMRN2 (Affinity Capture-MS), VDR (Two-hybrid)
ESM2 similar proteins: A2AV25, A5PJQ2, O35764, O43278, O43827, O70165, O95841, O95897, P02675, P02678, P04115, P12804, P14480, P30203, P33573, Q0P4P2, Q14314, Q1RMR1, Q24K15, Q29041, Q29042, Q29RY7, Q2KJ51, Q2TNK5, Q568Y7, Q5EA66, Q5FB95, Q5I2E5, Q5XK91, Q640P2, Q6AX44, Q6TMA8, Q8BM13, Q8IUK5, Q8K0E8, Q8N539, Q8NI99, Q8R0Z6, Q8R1Q3, Q91ZV7
Diamond homologs: A6H6E2, F1QC17, P59900, Q13201, Q8K482, Q91VF6, Q96A83, Q96A84, Q99K41, Q9BXX0, Q9H8L6, Q9NT22, Q9Y6C2, Q91VF5, B2RPV6, P83425, Q4ZJM7, Q5FVH0, Q8K479, Q8R066, Q9BXJ0, Q9BXJ3, P27658, Q7Z5L3, Q8CFR0, A6NHN0, Q0II24
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
319 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 281 |
| Likely benign | 18 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2394 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:86937126:C:CC | acceptor_gain | 1.0000 |
| 10:86942391:T:TA | donor_gain | 1.0000 |
| 10:86944127:CT:C | acceptor_gain | 1.0000 |
| 10:86944282:T:TA | donor_gain | 1.0000 |
| 10:86945186:A:AC | donor_gain | 1.0000 |
| 10:86945186:A:AT | donor_loss | 1.0000 |
| 10:86945187:C:CC | donor_gain | 1.0000 |
| 10:86945202:A:AC | donor_gain | 1.0000 |
| 10:86945203:C:CC | donor_gain | 1.0000 |
| 10:86945211:T:TA | donor_gain | 1.0000 |
| 10:86945264:GGAAT:G | acceptor_gain | 1.0000 |
| 10:86945265:GAAT:G | acceptor_gain | 1.0000 |
| 10:86945266:AAT:A | acceptor_gain | 1.0000 |
| 10:86945267:AT:A | acceptor_gain | 1.0000 |
| 10:86945268:TC:T | acceptor_loss | 1.0000 |
| 10:86945269:C:CA | acceptor_loss | 1.0000 |
| 10:86945269:C:CC | acceptor_gain | 1.0000 |
| 10:86945366:CTACC:C | donor_loss | 1.0000 |
| 10:86945367:TACC:T | donor_loss | 1.0000 |
| 10:86945368:A:AC | donor_gain | 1.0000 |
| 10:86945369:C:A | donor_loss | 1.0000 |
| 10:86945369:C:CC | donor_gain | 1.0000 |
| 10:86945474:TAC:T | acceptor_gain | 1.0000 |
| 10:86945475:AC:A | acceptor_gain | 1.0000 |
| 10:86945476:CC:C | acceptor_gain | 1.0000 |
| 10:86945477:CT:C | acceptor_loss | 1.0000 |
| 10:86945559:A:AC | donor_gain | 1.0000 |
| 10:86945560:C:CC | donor_gain | 1.0000 |
| 10:86945560:CATGA:C | donor_gain | 1.0000 |
| 10:86958786:C:G | donor_gain | 1.0000 |
AlphaMissense
6183 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:86943424:A:G | S454P | 0.987 |
| 10:86943420:A:G | L455P | 0.986 |
| 10:86943372:A:G | L471P | 0.985 |
| 10:86945381:C:G | C130S | 0.984 |
| 10:86945382:A:T | C130S | 0.984 |
| 10:86945408:C:G | C121S | 0.982 |
| 10:86945409:A:T | C121S | 0.982 |
| 10:86943435:A:G | L450P | 0.981 |
| 10:86945413:C:A | W119C | 0.980 |
| 10:86945413:C:G | W119C | 0.980 |
| 10:86943429:T:A | E452V | 0.978 |
| 10:86943447:A:G | L446P | 0.976 |
| 10:86943529:A:G | S419P | 0.976 |
| 10:86945681:C:G | C58S | 0.975 |
| 10:86945682:A:T | C58S | 0.975 |
| 10:86945381:C:T | C130Y | 0.972 |
| 10:86936985:A:C | Y870D | 0.971 |
| 10:86942996:G:C | F596L | 0.971 |
| 10:86942996:G:T | F596L | 0.971 |
| 10:86942998:A:G | F596L | 0.971 |
| 10:86943381:A:G | L468P | 0.971 |
| 10:86943428:C:A | E452D | 0.970 |
| 10:86943428:C:G | E452D | 0.970 |
| 10:86936765:C:T | G943D | 0.969 |
| 10:86943309:C:T | C492Y | 0.969 |
| 10:86943444:C:G | R447P | 0.969 |
| 10:86937008:A:G | F862S | 0.968 |
| 10:86943540:A:G | L415P | 0.968 |
| 10:86942531:G:C | F751L | 0.967 |
| 10:86942531:G:T | F751L | 0.967 |
dbSNP variants (sampled 300 via entrez): RS1000069376 (10:86958989 A>G), RS1000113071 (10:86943322 A>G), RS1000213699 (10:86935449 C>G,T), RS1000359594 (10:86946592 G>A,T), RS1000626752 (10:86935708 T>A), RS1000710933 (10:86935681 A>G), RS1000901777 (10:86941283 A>G), RS1000952471 (10:86947578 G>A), RS1000997324 (10:86935953 G>T), RS1001004701 (10:86947800 C>T), RS1001014929 (10:86952787 C>T), RS1001156048 (10:86941003 G>A), RS1001473450 (10:86958039 A>G), RS1001607840 (10:86941710 G>A,T), RS1001802359 (10:86942590 C>G,T)
Disease associations
OMIM: gene MIM:608925 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002701_17 | Verbal declarative memory | 7.000000e-06 |
| GCST002701_18 | Verbal declarative memory | 7.000000e-06 |
| GCST003818_33 | Resting heart rate | 1.000000e-08 |
| GCST006585_2272 | Blood protein levels | 4.000000e-43 |
| GCST006661_160 | Male-pattern baldness | 2.000000e-15 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004874 | memory performance |
| EFO:0006805 | word list delayed recall measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression, increases methylation | 3 |
| aristolochic acid I | increases expression | 1 |
| fluorene-9-bisphenol | decreases expression | 1 |
| titanium dioxide | increases expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| dimethylselenide | increases expression, increases oxidation | 1 |
| sulforaphane | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| abrine | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | increases methylation | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Lipopolysaccharides | increases expression, affects cotreatment, decreases expression, affects response to substance | 1 |
| Ozone | increases expression, increases oxidation | 1 |
| Silicon Dioxide | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alopecia