MOG

gene
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Also known as BTN6BTNL11

Summary

MOG (myelin oligodendrocyte glycoprotein, HGNC:7197) is a protein-coding gene on chromosome 6p22.1, encoding Myelin-oligodendrocyte glycoprotein (Q16653). Mediates homophilic cell-cell adhesion.

The product of this gene is a membrane protein expressed on the oligodendrocyte cell surface and the outermost surface of myelin sheaths. Due to this localization, it is a primary target antigen involved in immune-mediated demyelination. This protein may be involved in completion and maintenance of the myelin sheath and in cell-cell communication. Alternatively spliced transcript variants encoding different isoforms have been identified.

Source: NCBI Gene 4340 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): narcolepsy 7 (Limited, GenCC)
  • GWAS associations: 20
  • Clinical variants (ClinVar): 48 total — 1 pathogenic
  • Phenotypes (HPO): 34
  • MANE Select transcript: NM_206809

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:7197
Approved symbolMOG
Namemyelin oligodendrocyte glycoprotein
Location6p22.1
Locus typegene with protein product
StatusApproved
AliasesBTN6, BTNL11
Ensembl geneENSG00000204655
Ensembl biotypeprotein_coding
OMIM159465
Entrez4340

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 14 protein_coding, 3 nonsense_mediated_decay, 2 retained_intron, 2 protein_coding_CDS_not_defined

ENST00000376888, ENST00000376889, ENST00000376891, ENST00000376894, ENST00000376898, ENST00000376903, ENST00000376917, ENST00000396701, ENST00000396704, ENST00000416766, ENST00000431798, ENST00000469353, ENST00000469603, ENST00000476244, ENST00000483013, ENST00000485211, ENST00000485885, ENST00000490427, ENST00000494692, ENST00000963920, ENST00000963921

RefSeq mRNA: 10 — MANE Select: NM_206809 NM_001008228, NM_001008229, NM_001170418, NM_001363610, NM_002433, NM_206809, NM_206810, NM_206811, NM_206812, NM_206814

CCDS: CCDS34366, CCDS34367, CCDS34368, CCDS34369, CCDS34370, CCDS4667, CCDS47394, CCDS47395, CCDS54977, CCDS87379

Canonical transcript exons

ENST00000376917 — 8 exons

ExonStartEnd
ENSE000019202222965709229657297
ENSE000034652812966764329667663
ENSE000034972202967028129670397
ENSE000035404882965931929659666
ENSE000035825672966790429667924
ENSE000036177442966615229666265
ENSE000036857982967070129670721
ENSE000038456782967117229672365

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 99.59.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 12.9972 / max 1628.2246, expressed in 105 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter IDTPM avgSamples expressed
666584.860891
666593.203487
666562.203986
666541.720689
666570.604071
666550.404674

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
C1 segment of cervical spinal cordUBERON:000646999.59gold quality
substantia nigraUBERON:000203898.47gold quality
Ammon’s hornUBERON:000195498.38gold quality
putamenUBERON:000187498.24gold quality
primary visual cortexUBERON:000243698.19gold quality
temporal lobeUBERON:000187197.44gold quality
amygdalaUBERON:000187697.43gold quality
caudate nucleusUBERON:000187397.31gold quality
Brodmann (1909) area 9UBERON:001354096.81gold quality
corpus callosumUBERON:000233695.56gold quality
hypothalamusUBERON:000189895.45gold quality
nucleus accumbensUBERON:000188295.01gold quality
dorsolateral prefrontal cortexUBERON:000983494.77gold quality
right frontal lobeUBERON:000281094.76gold quality
superior frontal gyrusUBERON:000266194.54gold quality
cerebral cortexUBERON:000095692.41gold quality
anterior cingulate cortexUBERON:000983592.16gold quality
frontal cortexUBERON:000187090.72gold quality
brainUBERON:000095588.40gold quality
right hemisphere of cerebellumUBERON:001489087.27gold quality
prefrontal cortexUBERON:000045187.21gold quality
cerebellumUBERON:000203785.74gold quality
cerebellar cortexUBERON:000212985.69gold quality
cerebellar hemisphereUBERON:000224585.69gold quality
apex of heartUBERON:000209877.81gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047377.53silver quality
heart left ventricleUBERON:000208469.65gold quality
right atrium auricular regionUBERON:000663167.76gold quality
heartUBERON:000094866.19gold quality
popliteal arteryUBERON:000225050.28gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-HCAD-25yes54.16
E-MTAB-7303no3.16
E-ANND-3no0.66

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): HOXD1, PPARD

miRNA regulators (miRDB)

44 targeting MOG, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3925-3P100.0069.951237
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-126-5P100.0072.713180
HSA-MIR-4533100.0069.482758
HSA-MIR-1252-5P100.0069.802774
HSA-MIR-453499.9966.581907
HSA-MIR-607799.9968.042299
HSA-MIR-806899.9873.852376
HSA-MIR-808299.9567.271170
HSA-MIR-218-5P99.9372.222103
HSA-MIR-450B-5P99.9271.483175
HSA-MIR-568299.8972.561005
HSA-MIR-30A-3P99.8769.742928
HSA-MIR-30D-3P99.8769.922917
HSA-MIR-30E-3P99.8769.682942
HSA-MIR-449299.8768.253611
HSA-MIR-6515-3P99.8268.191933
HSA-MIR-4524A-3P99.7266.852406
HSA-MIR-518A-5P99.7069.012209
HSA-MIR-52799.7069.012209
HSA-MIR-7-5P99.6770.531809
HSA-MIR-427699.5667.662514
HSA-MIR-653-5P99.4667.351300
HSA-MIR-569799.3967.741249
HSA-MIR-124499.3368.38832
HSA-MIR-6734-3P99.1566.271627
HSA-MIR-6852-3P98.5467.601468
HSA-MIR-376B-5P98.4666.40606
HSA-MIR-376C-5P98.4666.64589
HSA-MIR-6780A-3P98.4267.491518

Literature-anchored findings (GeneRIF, showing 40)

  • identification of T cell epitopes that are encephalitogenic and presented by B cells (PMID:11739534)
  • The B cell and T cell epitopes have been identified in rat MOG-immunized marmosets, and these sequences are observed to map primarily onto accessible regions in the model, which may explain their ability to generate potent antibody responses. (PMID:11895369)
  • A T cell reactivity pattern analysis of multiple sclerosis patients at the onset of relapse or progression shows that there is a highly immunogenic epitope for CD4+ T cells within the transmembrane/intracellular part of MOG comprising amino acids 146-154. (PMID:12077287)
  • MOG-specific antibody is critical to the initiation of MOG-induced murine experimental autoimmune encephalomyelitis (PMID:12115610)
  • polymorphisms do not provide evidence to support a significant role for MOG in multiple sclerosis susceptibility. (PMID:12149493)
  • a substantial proportion of MOG-reactive T cells from some subjects have been activated in vivo without resulting in clinical disease (PMID:12482392)
  • Human MOG is immunogenic and induces experimental autoimmune encephalomyelitis in C57BL/6 mice via an encephalitogenic B cell response to epitopes on human MOG protein that most likely cross-react with mouse determinants. (PMID:12817031)
  • Demonstration of molecular mimicry between MOG and butyrophilin suggests that exposure to this common dietary antigen may influence the composition and function of the MOG-specific autoimmune repertoire during the course of multiple sclerosis. (PMID:14688379)
  • No significant evidence for biased transmission of alleles at the (CA)n (chi2=2.430, 6 df, P=0.876) (TAAA)n (chi2=3.550, 5 df, P=0.616), C1334T (chi2=0.040, 1 df, P=0.841) and C10991T (chi2=0.154,polymorphisms in patients with schizophrenia was seen. (PMID:15660663)
  • both the spectrum of MBP found, as well as the MOGIgd epitopes recognized by peripheral blood T cells in multiple sclerosis, appear to be similar for childhood/juvenile-onset and adult-onset patients (PMID:16900754)
  • In human brain the splice variants of MOG appear at a late stage compared to the major isoform, coincidental with myelination and myelin maturation, unlike other myelin proteins. (PMID:16903876)
  • pathogenic antibody response to native MOG in a subgroup of multiple sclerosis patients (PMID:17142321)
  • This study represents the first evidence of alternative translation products from the MOG gene. To date, it is believed that alternative splicing of MOG is limited to primates. (PMID:17402967)
  • results indicate that variation within the MOG gene is not an important independent determinant of multiple sclerosis -inherited risk in the Sardinian population (PMID:17509152)
  • MOG may be a target of Hoxd1 (PMID:17554625)
  • Our findings highlight myelin oligodendrocyte glycoprotein splicing as a factor that could be critical to the phenotypic expression of multiple sclerosis. (PMID:17573820)
  • The associations observed in Japanese and French patients, the linkage studies and the present work speak in favor of the existence of a susceptibility gene for autism in the NF1 locus. (PMID:17897745)
  • A sequence variation in the MOG gene is involved in multiple sclerosis susceptibility in Italy. (PMID:17928868)
  • although individuals with anti-myelin oligodendrocyte glycoprotein (MOG) antibodies have an increased risk of developing multiple sclerosis, this association may at least in part reflect cross-reactivity between MOG and Epstein-Barr nuclear antigen (PMID:18753473)
  • This protein has been found differentially expressed in the temporal lobe from patients with schizophrenia. (PMID:19034380)
  • Using shotgun mass spectrometry, we found this protein differentially expressed in the dorsolateral prefrontal cortex from patients with schizophrenia. (PMID:19165527)
  • genetic polymorphism is associated with autism in Sardinian children (PMID:19167444)
  • B cell autoimmunity to this MOG is therefore most common in patients with a very early onset of MS (PMID:19687098)
  • Our study provides first evidence that the MOG G511C (Val142Leu) polymorphism might be associated with structural changes in the total white matter volumes of OCD patients. (PMID:20452030)
  • This protein has been found differentially expressed in thalami from patients with schizophrenia. (PMID:20471030)
  • Conformational structure of the MOG-derived peptide 101-108 in solution. (PMID:20549678)
  • cell surface-expressed native myelin oligodendrocyte glycoprotein nor linear epitopes have a predictive or discriminative role during the preclinical disease phase for developing clinically isolated syndrome or multiple sclerosis later in life (PMID:20685767)
  • The results of this study have observed that changes in splicing, but not expression levels, are associated with common genetic variation in the MOG gene (PMID:20800907)
  • Persistence of MOG antibodies despite viral clearance in a high percentage of HIV-1 associated neurocognitive disorder (HAND) patients suggests ongoing neuroinflammation, possibly preventing recovery from HAND. (PMID:21083890)
  • Report provides evidence that the humoral immune response against MOG in children is specific for demyelinating inflammatory CNS disorders. (PMID:21177754)
  • A mutated MOG peptide [MOG97-109] enables detection of MOG97-109-reactive T cells in multiple sclerosis patients bearing the HLA-DRB1*0401 allele. (PMID:21653833)
  • The persistence or disappearance of antibodies to MOG may have prognostic relevance for acute childhood demyelination (PMID:21795651)
  • The authors found that the human myelin oligodendrocyte glycoprotein (MOG) specifically bound to the E1 envelope glycoprotein of rubella virus, and an antibody against MOG could block rubella virus infection. (PMID:21880773)
  • A missense mutation in myelin oligodendrocyte glycoprotein as a cause of familial narcolepsy with cataplexy. (PMID:21907016)
  • This study provides valuable information about requirements of anti-myelin oligodendrocyte glycoprotein reactivity for being regarded as a prognostic biomarker in a subtype of MS. (PMID:22093619)
  • We could show for the first time that a subset of aquaporin 4-IgG seronegative patients with neuromyelitis optica exhibit a MOG-IgG mediated immune response (PMID:22204662)
  • findings suggest that immune reactions toward MOG and in particular MOG-specific antibodies may play a functional role in multiple sclerosis (PMID:22494461)
  • Bipolar I disorder and schizophrenia share a number of common genetic risk loci and susceptibility genes including the genes coding for myelin oligodendrocytes glycoprotein (MOG). (PMID:23032943)
  • Patients with neuromyelitis optica spectrum disorders with MOG antibodies have distinct clinical features, fewer attacks, and better recovery than patients with AQP4 antibodies or patients seronegative for both antibodies. (PMID:24415568)
  • These data demonstrate a new role for myelin glycosylation in the control of immune homeostasis in the healthy human brain through the MOG-DC-SIGN homeostatic regulatory axis, which is comprised by inflammatory insults that affect glycosylation. (PMID:24935259)

Cross-species orthologs

2 orthologs

OrganismSymbolGene ID
mus_musculusMogENSMUSG00000076439
rattus_norvegicusENSRNOG00000078049

Paralogs (15): BTN3A1 (ENSG00000026950), CD276 (ENSG00000103855), BTN3A3 (ENSG00000111801), BTN2A1 (ENSG00000112763), BTNL8 (ENSG00000113303), HHLA2 (ENSG00000114455), BTN2A2 (ENSG00000124508), BTN1A1 (ENSG00000124557), VTCN1 (ENSG00000134258), ICOSLG (ENSG00000160223), ERMAP (ENSG00000164010), BTNL9 (ENSG00000165810), BTNL3 (ENSG00000168903), BTN3A2 (ENSG00000186470), BTNL2 (ENSG00000204290)

Protein

Protein identifiers

Myelin-oligodendrocyte glycoproteinQ16653 (reviewed: Q16653)

All UniProt accessions (5): C9JTE0, E9PG44, Q16653, H0Y8A0, H7BYC0

UniProt curated annotations — full annotation on UniProt →

Function. Mediates homophilic cell-cell adhesion. Minor component of the myelin sheath. May be involved in completion and/or maintenance of the myelin sheath and in cell-cell communication. (Microbial infection) Acts as a receptor for rubella virus.

Subunit / interactions. Homodimer. May form heterodimers between the different isoforms. (Microbial infection) Interacts with rubella virus E2 glycoprotein.

Subcellular location. Cell membrane Cell membrane Cell membrane Cell membrane Cell membrane Cell membrane Cell membrane Cell membrane Cell membrane.

Tissue specificity. Found exclusively in the CNS, where it is localized on the surface of myelin and oligodendrocyte cytoplasmic membranes.

Disease relevance. Narcolepsy 7 (NRCLP7) [MIM:614250] Neurological disabling sleep disorder, characterized by excessive daytime sleepiness, sleep fragmentation, symptoms of abnormal rapid-eye-movement (REM) sleep, cataplexy, hypnagogic hallucinations, and sleep paralysis. Cataplexy is a sudden loss of muscle tone triggered by emotions, which is the most valuable clinical feature used to diagnose narcolepsy. Human narcolepsy is primarily a sporadically occurring disorder but familial clustering has been observed. The disease is caused by variants affecting the gene represented in this entry.

Miscellaneous. Not functionally active. May be expressed at low level in the adult. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.

Similarity. Belongs to the immunoglobulin superfamily. BTN/MOG family.

Isoforms (13)

UniProt IDNamesCanonical?
Q16653-11, Alpha-1yes
Q16653-22, Alpha-2
Q16653-33, Alpha-3
Q16653-44, Alpha-4
Q16653-55, Beta-1
Q16653-66, Beta-2
Q16653-77, Beta-3
Q16653-88, Beta-4
Q16653-99
Q16653-1010
Q16653-1111
Q16653-1212
Q16653-1313, X1

RefSeq proteins (10): NP_001008229, NP_001008230, NP_001163889, NP_001350539, NP_002424, NP_996532, NP_996533, NP_996534, NP_996535, NP_996537 (=MANE)

Domains & families (InterPro)

IDNameType
IPR003599Ig_subDomain
IPR007110Ig-like_domDomain
IPR013106Ig_V-setDomain
IPR013783Ig-like_foldHomologous_superfamily
IPR016663Myelin-oligodendrocyte_glycopFamily
IPR036179Ig-like_dom_sfHomologous_superfamily
IPR050504IgSF_BTN/MOG-likeFamily

Pfam: PF07686

UniProt features (24 total): splice variant 11, topological domain 3, sequence variant 3, transmembrane region 2, signal peptide 1, chain 1, domain 1, glycosylation site 1, disulfide bond 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q16653-F184.600.48

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Disulfide bonds (1): 53–127

Glycosylation sites (1): 60

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 143 (showing top): ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GOBP_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOCC_CELL_SURFACE, CAGCTG_AP4_Q5, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_CYTOKINE_PRODUCTION, GOBP_BIOLOGICAL_PROCESS_INVOLVED_IN_INTERACTION_WITH_HOST, GOBP_VIRAL_LIFE_CYCLE, GOBP_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOMF_SIGNALING_RECEPTOR_BINDING, LEIN_OLIGODENDROCYTE_MARKERS, GOCC_SIDE_OF_MEMBRANE, GOBP_ACTIVATION_OF_IMMUNE_RESPONSE, KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP

GO Biological Process (5): regulation of cytokine production (GO:0001817), cell adhesion (GO:0007155), central nervous system development (GO:0007417), T cell receptor signaling pathway (GO:0050852), symbiont entry into host cell (GO:0046718)

GO Molecular Function (3): virus receptor activity (GO:0001618), signaling receptor binding (GO:0005102), protein binding (GO:0005515)

GO Cellular Component (3): plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), membrane (GO:0016020)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cytokine production1
regulation of gene expression1
regulation of multicellular organismal process1
cellular process1
nervous system development1
system development1
antigen receptor-mediated signaling pathway1
viral life cycle1
symbiont entry into host1
symbiont entry into host cell1
exogenous protein binding1
protein binding1
binding1
membrane1
cell periphery1
plasma membrane1
cell surface1
side of membrane1
cellular anatomical structure1

Protein interactions and networks

STRING

2188 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MOGMBPP02686948
MOGPLP1P04400877
MOGMAGP20916867
MOGIL17AQ16552850
MOGIFNGP01579823
MOGCNPP09543818
MOGCD4P01730789
MOGIL10P22301772
MOGRTN4RQ9BZR6767
MOGIL4P05112735
MOGCD209Q9NNX6724
MOGOLIG1Q8TAK6724
MOGFOXP3Q9BZS1718
MOGCNTN2P78432712
MOGCD8AP01732669

IntAct

17 interactions, top by confidence:

ABTypeScore
MOGKBTBD8psi-mi:“MI:0915”(physical association)0.400
MOGFCGR2Apsi-mi:“MI:0915”(physical association)0.400
FCGR1AMOGpsi-mi:“MI:0915”(physical association)0.400
MOGLILRB2psi-mi:“MI:0915”(physical association)0.400
LILRA1MOGpsi-mi:“MI:0915”(physical association)0.400
MOGLILRA2psi-mi:“MI:0915”(physical association)0.400
MOGLILRA6psi-mi:“MI:0915”(physical association)0.400
MOGLILRB3psi-mi:“MI:0915”(physical association)0.400
MOGLILRB5psi-mi:“MI:0915”(physical association)0.400
MOGLRRC4Cpsi-mi:“MI:0915”(physical association)0.400
MOGSIGLEC6psi-mi:“MI:0915”(physical association)0.400
TIE1MOGpsi-mi:“MI:0915”(physical association)0.400
MOGADRB2psi-mi:“MI:0915”(physical association)0.370
MOGTSHRpsi-mi:“MI:0915”(physical association)0.370
OTUD4KRT36psi-mi:“MI:0914”(association)0.350
MOGSCAMP2psi-mi:“MI:0914”(association)0.350

BioGRID (21): LOC100507537 (Two-hybrid), MOG (Two-hybrid), MOG (Two-hybrid), MOG (Affinity Capture-MS), KBTBD8 (Affinity Capture-MS), ATP5B (Affinity Capture-MS), ARL6IP5 (Affinity Capture-MS), SAAL1 (Affinity Capture-MS), REEP6 (Affinity Capture-MS), ATP5I (Affinity Capture-MS), GOPC (Affinity Capture-MS), MMP15 (Affinity Capture-MS), TSPAN15 (Affinity Capture-MS), SCAMP2 (Affinity Capture-MS), C4orf32 (Affinity Capture-MS)

ESM2 similar proteins: A0A0E4BZH1, A4QPC6, A5D7V5, A7TZE6, A7TZF0, A7TZF3, A7XUX6, A7XV04, A7XV07, A8K4G0, A8MVZ5, O70355, P08508, P18892, P24071, P31994, P55803, P78410, P79391, Q13410, Q16653, Q29ZQ1, Q3KPI0, Q58DF9, Q5R7W8, Q5R960, Q5R996, Q61885, Q62556, Q63345, Q6Q8B3, Q6UXZ3, Q6XJV4, Q6XJV6, Q7KYR7, Q7TST0, Q7YR73, Q8BTP3, Q8K249, Q8TD46

Diamond homologs: A0A0E4BZH1, A4QPC6, A7TZE6, A7TZF0, A7TZF3, A7TZG1, A7TZG3, A7XUX6, A7XUY5, A7XUZ6, A7XV04, A7XV07, A7XV14, A8MVZ5, O00478, O00481, O70355, P18892, P55803, P78410, Q13410, Q16653, Q29ZQ1, Q5R7W8, Q5R960, Q5R996, Q61885, Q62556, Q63345, Q6MG97, Q6UX41, Q6UXE8, Q6UXG8, Q7KYR7, Q7TST0, Q8BJE2, Q8WVV5, Q96KV6, Q96PL5, Q9BGS7

SIGNOR signaling

1 interactions.

AEffectBMechanism
MOGup-regulatesMyelination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 17 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell853.6×1e-11
Adaptive Immune System818.4×3e-08

GO biological processes:

GO termPartnersFoldFDR
immune response-regulating signaling pathway6160.8×1e-10
cell surface receptor signaling pathway830.1×4e-09
adaptive immune response524.8×3e-05

Disease & clinical

Clinical variants and AI predictions

ClinVar

48 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance30
Likely benign4
Benign7

Top pathogenic / likely-pathogenic (1)

Variant IDHGVSClassification
29798NM_206809.4(MOG):c.398C>G (p.Ser133Cys)Pathogenic

SpliceAI

1642 predictions. Top by Δscore:

VariantEffectΔscore
6:29657295:CAGGT:Cdonor_loss1.0000
6:29667925:G:GAdonor_loss1.0000
6:29670695:TTTCA:Tacceptor_loss1.0000
6:29670697:TCAG:Tacceptor_loss1.0000
6:29670699:AGGG:Aacceptor_loss1.0000
6:29670700:G:Tacceptor_loss1.0000
6:29670722:G:GGdonor_gain1.0000
6:29657294:GCAG:Gdonor_gain0.9900
6:29657298:G:GGdonor_gain0.9900
6:29659318:GGGCA:Gacceptor_gain0.9900
6:29659665:AGGTG:Adonor_loss0.9900
6:29659668:T:Adonor_loss0.9900
6:29665875:GAT:Gdonor_gain0.9900
6:29665878:G:GGdonor_gain0.9900
6:29667637:TTTTA:Tacceptor_loss0.9900
6:29667638:TTTA:Tacceptor_loss0.9900
6:29667639:TTA:Tacceptor_loss0.9900
6:29667640:TA:Tacceptor_loss0.9900
6:29667642:G:GAacceptor_loss0.9900
6:29667665:T:Adonor_loss0.9900
6:29667898:TTTCA:Tacceptor_loss0.9900
6:29667899:TTCA:Tacceptor_loss0.9900
6:29667900:TCA:Tacceptor_loss0.9900
6:29667902:A:AGacceptor_gain0.9900
6:29667902:AGAGA:Aacceptor_loss0.9900
6:29667903:G:GAacceptor_gain0.9900
6:29667903:GA:Gacceptor_gain0.9900
6:29667925:G:GGdonor_gain0.9900
6:29670699:A:AGacceptor_gain0.9900
6:29670699:AG:Aacceptor_gain0.9900

AlphaMissense

1578 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
6:29659432:T:AW68R0.998
6:29659432:T:CW68R0.998
6:29659611:C:GC127W0.998
6:29659434:G:CW68C0.997
6:29659434:G:TW68C0.997
6:29659609:T:CC127R0.997
6:29659460:T:AV77D0.996
6:29659609:T:AC127S0.996
6:29659610:G:AC127Y0.996
6:29659610:G:CC127S0.996
6:29659382:T:CL51S0.995
6:29659655:T:CL142S0.994
6:29659387:T:CC53R0.993
6:29659389:T:GC53W0.993
6:29659520:G:CR97P0.993
6:29659565:T:CL112P0.993
6:29659610:G:TC127F0.993
6:29670343:G:AG219R0.993
6:29670343:G:CG219R0.993
6:29659388:G:AC53Y0.992
6:29659565:T:AL112H0.992
6:29659571:T:CI114T0.991
6:29659619:G:CR130P0.991
6:29659642:G:CA138P0.991
6:29659324:T:CF32L0.990
6:29659326:C:AF32L0.990
6:29659326:C:GF32L0.990
6:29659433:G:CW68S0.990
6:29659462:C:GH78D0.989
6:29659466:T:CL79P0.989

dbSNP variants (sampled 300 via entrez): RS1000236309 (6:29658725 C>A), RS1000261750 (6:29667448 T>G), RS1000568723 (6:29656712 A>G), RS1000601334 (6:29657120 G>A), RS1000665788 (6:29664494 A>G), RS1000999404 (6:29661672 T>C,G), RS1001237514 (6:29660083 G>A), RS1001354065 (6:29667597 G>A,C), RS1001805033 (6:29667861 T>C), RS1002660954 (6:29672047 G>C), RS1002796456 (6:29658061 C>T), RS1003165020 (6:29665191 G>A), RS1003337795 (6:29666413 T>C), RS1003452694 (6:29666619 A>G), RS1003462409 (6:29662210 G>A)

Disease associations

OMIM: gene MIM:159465 | disease phenotypes: MIM:614250

GenCC curated gene-disease

DiseaseClassificationInheritance
narcolepsy 7LimitedUnknown

Mondo (1): narcolepsy 7 (MONDO:0013652)

Orphanet (1): Narcolepsy type 1 (Orphanet:2073)

HPO phenotypes

34 total (30 of 34 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000017Nocturia
HP:0000709Psychosis
HP:0000711Restlessness
HP:0000716Depression
HP:0000738Hallucinations
HP:0000739Anxiety
HP:0000822Hypertension
HP:0000826Precocious puberty
HP:0000975Hyperhidrosis
HP:0001262Excessive daytime somnolence
HP:0001279Syncope
HP:0001350Slurred speech
HP:0001513Obesity
HP:0002019Constipation
HP:0002076Migraine
HP:0002307Drooling
HP:0002360Sleep disturbance
HP:0002494Abnormal rapid eye movement sleep
HP:0002519Hypnagogic hallucination
HP:0002524Cataplexy
HP:0002870Obstructive sleep apnea
HP:0005978Type II diabetes mellitus
HP:0006896Hypnopompic hallucination
HP:0007018Attention deficit hyperactivity disorder
HP:0007686Abnormal pupillary function
HP:0010534Transient global amnesia
HP:0010535Sleep apnea
HP:0011462Young adult onset
HP:0012452Restless legs

GWAS associations

20 associations (top):

StudyTraitp-value
GCST001438_6Crohn’s disease2.000000e-10
GCST001784_20Pulmonary function (smoking interaction)4.000000e-07
GCST003383_1Platelet count1.000000e-09
GCST004521_112Autism spectrum disorder or schizophrenia3.000000e-26
GCST004521_171Autism spectrum disorder or schizophrenia4.000000e-14
GCST004521_247Autism spectrum disorder or schizophrenia4.000000e-09
GCST004521_263Autism spectrum disorder or schizophrenia7.000000e-17
GCST004521_268Autism spectrum disorder or schizophrenia7.000000e-12
GCST004521_295Autism spectrum disorder or schizophrenia6.000000e-18
GCST004521_44Autism spectrum disorder or schizophrenia2.000000e-17
GCST004521_56Autism spectrum disorder or schizophrenia1.000000e-22
GCST004521_58Autism spectrum disorder or schizophrenia1.000000e-17
GCST004521_79Autism spectrum disorder or schizophrenia1.000000e-16
GCST004521_80Autism spectrum disorder or schizophrenia1.000000e-15
GCST004744_50Lung adenocarcinoma9.000000e-07
GCST004748_97Lung cancer7.000000e-19
GCST004749_82Lung cancer in ever smokers2.000000e-13
GCST010083_218Hemoglobin levels1.000000e-44
GCST012226_459Waist circumference adjusted for body mass index3.000000e-08
GCST90020028_882Hip circumference adjusted for BMI4.000000e-10

EFO canonical traits (6, from GWAS)

EFO IDTrait name
EFO:0003892pulmonary function measurement
EFO:0004713FEV/FVC ratio
EFO:0004309platelet count
EFO:0004509hemoglobin measurement
EFO:0007789BMI-adjusted waist circumference
EFO:0008039BMI-adjusted hip circumference

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

13 total (human), top 13 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneaffects methylation, increases mutagenesis3
bisphenol Fincreases methylation1
bisphenol Aaffects cotreatment, decreases methylation1
Fulvestrantaffects cotreatment, decreases methylation1
Arsenicaffects methylation1
Formaldehydeincreases expression1
Ivermectindecreases expression1
Methotrexatedecreases expression1
Testosteronedecreases expression1
Tetrachlorodibenzodioxindecreases expression1
Vitamin Edecreases expression1
Aflatoxin B1decreases methylation1
Zinc Sulfatedecreases expression1

Cellosaurus cell lines

2 cell lines: 1 spontaneously immortalized cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_DG55CHO-MOGSpontaneously immortalized cell lineFemale
CVCL_LC63LTK-MOGTransformed cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Associated diseases: narcolepsy 7
  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): narcolepsy 7