MPI

gene
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Summary

MPI (mannose phosphate isomerase, HGNC:7216) is a protein-coding gene on chromosome 15q24.1, encoding Mannose-6-phosphate isomerase (P34949). Isomerase that catalyzes the interconversion of fructose-6-P and mannose-6-P and has a critical role in the supply of D-mannose derivatives required for many eukaryotic glycosylation reactions.

Phosphomannose isomerase catalyzes the interconversion of fructose-6-phosphate and mannose-6-phosphate and plays a critical role in maintaining the supply of D-mannose derivatives, which are required for most glycosylation reactions. Mutations in the MPI gene were found in patients with carbohydrate-deficient glycoprotein syndrome, type Ib. Alternative splicing results in multiple transcript variants.

Source: NCBI Gene 4351 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): MPI-congenital disorder of glycosylation (Definitive, ClinGen)
  • GWAS associations: 20
  • Clinical variants (ClinVar): 614 total — 37 pathogenic, 86 likely-pathogenic
  • Phenotypes (HPO): 38
  • Druggable target: yes — 2 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_002435

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:7216
Approved symbolMPI
Namemannose phosphate isomerase
Location15q24.1
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000178802
Ensembl biotypeprotein_coding
OMIM154550
Entrez4351

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 21 protein_coding, 4 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined

ENST00000323744, ENST00000352410, ENST00000535694, ENST00000561470, ENST00000562606, ENST00000562800, ENST00000563422, ENST00000563786, ENST00000564003, ENST00000564633, ENST00000564692, ENST00000565576, ENST00000566377, ENST00000566556, ENST00000567116, ENST00000567132, ENST00000567177, ENST00000567570, ENST00000568303, ENST00000568828, ENST00000568840, ENST00000568907, ENST00000569233, ENST00000569931, ENST00000897793, ENST00000940246, ENST00000967445

RefSeq mRNA: 5 — MANE Select: NM_002435 NM_001289155, NM_001289156, NM_001289157, NM_001330372, NM_002435

CCDS: CCDS10272, CCDS73756, CCDS73757, CCDS73758, CCDS81908

Canonical transcript exons

ENST00000352410 — 8 exons

ExonStartEnd
ENSE000012455397489701174897219
ENSE000012455467489615274896325
ENSE000018167807489751274902219
ENSE000034681147489266174892802
ENSE000034765297489052774890654
ENSE000035079467489004274890089
ENSE000036203297489137974891579
ENSE000036227047489313874893320

Expression profiles

Bgee: expression breadth ubiquitous, 244 present calls, max score 95.26.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.6045 / max 112.2348, expressed in 1782 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
14774222.60451782

Top tissues by expression

283 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
apex of heartUBERON:000209895.26gold quality
mucosa of transverse colonUBERON:000499195.12gold quality
right adrenal glandUBERON:000123395.02gold quality
right adrenal gland cortexUBERON:003582794.49gold quality
left adrenal glandUBERON:000123494.09gold quality
left adrenal gland cortexUBERON:003582593.74gold quality
hindlimb stylopod muscleUBERON:000425293.38gold quality
prefrontal cortexUBERON:000045193.22gold quality
right frontal lobeUBERON:000281093.20gold quality
cingulate cortexUBERON:000302792.91gold quality
anterior cingulate cortexUBERON:000983592.87gold quality
adrenal glandUBERON:000236992.58gold quality
ventricular zoneUBERON:000305392.42gold quality
rectumUBERON:000105292.33gold quality
colonic epitheliumUBERON:000039792.24gold quality
right atrium auricular regionUBERON:000663192.22gold quality
adrenal tissueUBERON:001830392.04gold quality
gastrocnemiusUBERON:000138891.94gold quality
C1 segment of cervical spinal cordUBERON:000646991.90gold quality
adrenal cortexUBERON:000123591.78gold quality
Brodmann (1909) area 10UBERON:001354191.74gold quality
muscle of legUBERON:000138391.63gold quality
heart left ventricleUBERON:000208491.52gold quality
gall bladderUBERON:000211091.45gold quality
transverse colonUBERON:000115791.33gold quality
Brodmann (1909) area 9UBERON:001354091.33gold quality
cardiac ventricleUBERON:000208290.85gold quality
right lobe of liverUBERON:000111490.80gold quality
right ovaryUBERON:000211890.80gold quality
right uterine tubeUBERON:000130290.72gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes3.89

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

76 targeting MPI, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4455100.0065.481587
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-6758-5P100.0066.211470
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-118499.9968.191458
HSA-MIR-373-5P99.9875.364753
HSA-MIR-616-5P99.9875.584775
HSA-MIR-3617-3P99.9867.86918
HSA-MIR-426799.9666.532368
HSA-MIR-6772-5P99.9467.01577
HSA-MIR-6780A-5P99.8866.692776
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-1273H-5P99.7766.322471
HSA-MIR-3680-3P99.7572.513095
HSA-MIR-149-3P99.7268.223963
HSA-MIR-182599.7268.111089
HSA-MIR-30B-3P99.7065.762325
HSA-MIR-3689A-3P99.7065.732306
HSA-MIR-3689B-3P99.7065.712311
HSA-MIR-3689C99.7065.712311
HSA-MIR-6779-5P99.7065.762363
HSA-MIR-6883-5P99.6968.053785
HSA-MIR-509399.6769.262291
HSA-MIR-7-5P99.6770.531809
HSA-MIR-4690-5P99.6566.24813
HSA-MIR-6715B-5P99.6469.631420
HSA-MIR-182799.6368.573265
HSA-MIR-466399.6265.33957
HSA-MIR-24-3P99.5969.971934

Literature-anchored findings (GeneRIF, showing 6)

  • The mannose-6-phosphate-enzyme complex is developed and the key residues involved in the ligand binding are determined. Our results suggest a hydride transfer mechanism of alpha-hydrogen between the C1 and C2 positions. (PMID:16488169)
  • Phosphomannose isomerase inhibitors improve N-glycosylation in selected phosphomannomutase-deficient fibroblasts (PMID:21949237)
  • This work provides mechanistic evidence by which mannose phosphate isomerase loss induces p53, and identifies mannose phosphate isomerase as a novel regulator of p53 and Warburg metabolism. (PMID:28644127)
  • MPI loss is a driver of liver fibrosis and suggest that modulating mannose metabolism pathways could reduce hepatic stellate cell activation and improve hepatic fibrosis. (PMID:31016744)
  • MPI-based bioinformatic analysis and co-inhibitory therapy with mannose for oral squamous cell carcinoma. (PMID:34313879)
  • Selective Immobilization of His-Tagged Phosphomannose Isomerase on Ni Chelated Nanoparticles with Good Reusability and Activity. (PMID:34958513)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_reriompiENSDARG00000030786
mus_musculusMpiENSMUSG00000032306
rattus_norvegicusMpiENSRNOG00000018898
drosophila_melanogasterMpiFBGN0286506
caenorhabditis_elegansWBGENE00014013
caenorhabditis_elegansWBGENE00015464

Protein

Protein identifiers

Mannose-6-phosphate isomeraseP34949 (reviewed: P34949)

Alternative names: Phosphohexomutase, Phosphomannose isomerase

All UniProt accessions (18): B4DYB8, P34949, F5GX71, H3BM77, H3BMZ9, H3BN01, H3BNY8, H3BP57, H3BPB8, H3BPM5, H3BPP3, H3BPU7, H3BQX0, H3BT46, H3BT48, H3BU66, H3BUG1, H3BUZ9

UniProt curated annotations — full annotation on UniProt →

Function. Isomerase that catalyzes the interconversion of fructose-6-P and mannose-6-P and has a critical role in the supply of D-mannose derivatives required for many eukaryotic glycosylation reactions.

Subcellular location. Cytoplasm.

Tissue specificity. Expressed in all tissues, but more abundant in heart, brain and skeletal muscle.

Disease relevance. Congenital disorder of glycosylation 1B (CDG1B) [MIM:602579] A form of congenital disorder of glycosylation, a multisystem disorder caused by a defect in glycoprotein biosynthesis and characterized by under-glycosylated serum glycoproteins. Congenital disorders of glycosylation result in a wide variety of clinical features, such as defects in the nervous system development, psychomotor retardation, dysmorphic features, hypotonia, coagulation disorders, and immunodeficiency. The broad spectrum of features reflects the critical role of N-glycoproteins during embryonic development, differentiation, and maintenance of cell functions. CDG1B is clinically characterized by protein-losing enteropathy. The disease is caused by variants affecting the gene represented in this entry.

Cofactor. Binds 1 zinc ion per subunit.

Pathway. Nucleotide-sugar biosynthesis; GDP-alpha-D-mannose biosynthesis; alpha-D-mannose 1-phosphate from D-fructose 6-phosphate: step 1/2.

Similarity. Belongs to the mannose-6-phosphate isomerase type 1 family.

Isoforms (2)

UniProt IDNamesCanonical?
P34949-11yes
P34949-22

RefSeq proteins (5): NP_001276084, NP_001276085, NP_001276086, NP_001317301, NP_002426* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001250Man6P_Isoase-1Family
IPR011051RmlC_Cupin_sfHomologous_superfamily
IPR014710RmlC-like_jellyrollHomologous_superfamily
IPR016305Mannose-6-P_IsomeraseFamily
IPR018050Pmannose_isomerase-type1_CSConserved_site
IPR046456PMI_typeI_CDomain
IPR046457PMI_typeI_catDomain
IPR046458PMI_typeI_helDomain

Pfam: PF01238, PF20511, PF20512

Catalyzed reactions (Rhea), 1 shown:

  • D-mannose 6-phosphate = D-fructose 6-phosphate (RHEA:12356)

UniProt features (24 total): sequence variant 13, binding site 4, modified residue 3, initiator methionine 1, chain 1, splice variant 1, active site 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P34949-F196.500.97

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 295

Ligand- & substrate-binding residues (4): 110; 112; 137; 276

Post-translational modifications (3): 2, 102, 108

Function

Pathways and Gene Ontology

Reactome pathways

11 pathways

IDPathway
R-HSA-4043916Defective MPI causes MPI-CDG
R-HSA-446205Synthesis of GDP-mannose
R-HSA-1643685Disease
R-HSA-3781865Diseases of glycosylation
R-HSA-392499Metabolism of proteins
R-HSA-446193Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
R-HSA-446203Asparagine N-linked glycosylation
R-HSA-446219Synthesis of substrates in N-glycan biosythesis
R-HSA-5609975Diseases associated with glycosylation precursor biosynthesis
R-HSA-5668914Diseases of metabolism
R-HSA-597592Post-translational protein modification

MSigDB gene sets: 225 (showing top): GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_MONOSACCHARIDE_CATABOLIC_PROCESS, AACYNNNNTTCCS_UNKNOWN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, BROWNE_HCMV_INFECTION_14HR_DN, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP, GOBP_CARBOHYDRATE_METABOLIC_PROCESS, WINTER_HYPOXIA_METAGENE, GOBP_SMALL_MOLECULE_CATABOLIC_PROCESS

GO Biological Process (4): GDP-mannose biosynthetic process (GO:0009298), mannose to fructose-6-phosphate catabolic process (GO:0061611), obsolete GDP-D-mannose biosynthetic process from fructose-6-phosphate (GO:0061729), carbohydrate metabolic process (GO:0005975)

GO Molecular Function (5): mannose-6-phosphate isomerase activity (GO:0004476), zinc ion binding (GO:0008270), protein binding (GO:0005515), isomerase activity (GO:0016853), metal ion binding (GO:0046872)

GO Cellular Component (3): cytosol (GO:0005829), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)

Reactome top-level categories

Rollup of top-9 pathways:

CategoryPathways
Diseases associated with glycosylation precursor biosynthesis1
Synthesis of substrates in N-glycan biosythesis1
Diseases of metabolism1
Asparagine N-linked glycosylation1
Post-translational protein modification1
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein1
Diseases of glycosylation1
Disease1
Metabolism of proteins1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure2
phosphomannomutase activity1
nucleotide-sugar biosynthetic process1
GDP-mannose metabolic process1
mannose-6-phosphate isomerase activity1
fructose 6-phosphate metabolic process1
mannokinase activity1
mannose catabolic process1
primary metabolic process1
intramolecular oxidoreductase activity, interconverting aldoses and ketoses1
transition metal ion binding1
binding1
catalytic activity1
cation binding1
cytoplasm1
extracellular vesicle1
intracellular anatomical structure1

Protein interactions and networks

STRING

1594 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
MPIPMM2O15305955
MPIGPIP06744933
MPISRD5A3Q9H8P0859
MPIH6PDO95479789
MPIG6PDP11413787
MPIPGDP52209775
MPIGUSBP08236758
MPIALG12Q9BV10704
MPISERPINC1P01008671
MPIGALEQ14376641
MPIGMPPBQ9Y5P6627
MPIPGM1P36871612
MPIGMPPAQ96IJ6582
MPIPGM3O95394565
MPIALG2Q9H553563

IntAct

16 interactions, top by confidence:

ABTypeScore
CPNE8MPIpsi-mi:“MI:0915”(physical association)0.400
NPMPIpsi-mi:“MI:0915”(physical association)0.370
MPIBDKRB2psi-mi:“MI:0915”(physical association)0.370
MPICFTRpsi-mi:“MI:0915”(physical association)0.370
KSR1FBLL1psi-mi:“MI:0914”(association)0.350
SAR1BUBA6psi-mi:“MI:0914”(association)0.350
P2RY10POTEFpsi-mi:“MI:0914”(association)0.350
MPISERPINA3psi-mi:“MI:0914”(association)0.350
ANLNUBA6psi-mi:“MI:0914”(association)0.350
SERBP1UBA6psi-mi:“MI:0914”(association)0.350
OPTNSMCHD1psi-mi:“MI:0914”(association)0.350
STING1SMCHD1psi-mi:“MI:0914”(association)0.350
MAGEF1SMCHD1psi-mi:“MI:0914”(association)0.350
CFAP263SPTBN2psi-mi:“MI:0914”(association)0.350
MPIADApsi-mi:“MI:0914”(association)0.350

BioGRID (61): TGM1 (Affinity Capture-MS), IVL (Affinity Capture-MS), S100A14 (Affinity Capture-MS), MIF (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), MPI (Co-fractionation), NECAP1 (Co-fractionation), NECAP2 (Co-fractionation)

ESM2 similar proteins: A2VDC2, A5A6K3, D4AAT7, O35952, P00937, P34949, P40939, Q01415, Q08B22, Q09669, Q1PEY5, Q1ZXF1, Q28C91, Q28FR6, Q29554, Q2HJ73, Q2TAA5, Q3KRD0, Q3TZM9, Q42942, Q55GS6, Q561R9, Q58EB4, Q5EAD2, Q5F4K8, Q5HZQ8, Q5R6J8, Q5R7Z6, Q5XF59, Q5XIE6, Q5ZJ60, Q61753, Q64428, Q68FH4, Q68FX1, Q6NMB0, Q6NVY1, Q6PI48, Q84MD8, Q8BIP0

Diamond homologs: A5A6K3, O43014, P00946, P25081, P29951, P29952, P34650, P34948, P34949, Q3SZI0, Q54PA0, Q66WM4, Q68FX1, Q75AB5, Q76IQ2, Q83KZ1, Q870Y1, Q8HXX2, Q8J093, Q924M7, Q9FZH5, Q9GP38, Q9HFU4, Q9M884

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

614 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic37
Likely pathogenic86
Uncertain significance139
Likely benign280
Benign12

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1071838NM_002435.3(MPI):c.1034dup (p.Thr346fs)Pathogenic
1366385NM_002435.3(MPI):c.820dup (p.Val274fs)Pathogenic
1367639NM_002435.3(MPI):c.335_338del (p.His112fs)Pathogenic
1370035NM_002435.3(MPI):c.753del (p.Phe252fs)Pathogenic
1376774NM_002435.3(MPI):c.150G>A (p.Trp50Ter)Pathogenic
1412273NM_002435.3(MPI):c.647_650del (p.Leu215_Leu216insTer)Pathogenic
14345NM_002435.3(MPI):c.656G>A (p.Arg219Gln)Pathogenic
1444990NM_002435.3(MPI):c.745dup (p.Ile249fs)Pathogenic
1451527NM_002435.3(MPI):c.1053+2T>CPathogenic
1457290NM_002435.3(MPI):c.264del (p.Asp88fs)Pathogenic
188967NM_002435.3(MPI):c.166dup (p.Arg56fs)Pathogenic
1961516NM_002435.3(MPI):c.613G>T (p.Glu205Ter)Pathogenic
2015644NM_002435.3(MPI):c.1006_1007del (p.Ser336fs)Pathogenic
2056193NM_002435.3(MPI):c.764_776del (p.Tyr255fs)Pathogenic
2086713NM_002435.3(MPI):c.706dup (p.Glu236fs)Pathogenic
2109971NM_002435.3(MPI):c.1137_1140del (p.Ser380fs)Pathogenic
2174331NM_002435.3(MPI):c.989_1005dup (p.Ser336fs)Pathogenic
218094NM_002435.3(MPI):c.1205A>G (p.Glu402Gly)Pathogenic
2735509NM_002435.3(MPI):c.206del (p.Lys69fs)Pathogenic
2743321NM_002435.3(MPI):c.612_615del (p.Ser204fs)Pathogenic
2744685NM_002435.3(MPI):c.43_44insCTGGGGGA (p.Gln15fs)Pathogenic
2750988NM_002435.3(MPI):c.490del (p.Val164fs)Pathogenic
2759540NM_002435.3(MPI):c.1166del (p.Pro389fs)Pathogenic
2769293NM_002435.3(MPI):c.43C>T (p.Gln15Ter)Pathogenic
2772652NM_002435.3(MPI):c.65del (p.Gly22fs)Pathogenic
2802194NM_002435.3(MPI):c.1058del (p.Pro353fs)Pathogenic
2817891NM_002435.3(MPI):c.751del (p.Cys251fs)Pathogenic
2823076NM_002435.3(MPI):c.370dup (p.Gln124fs)Pathogenic
2824025NM_002435.3(MPI):c.222G>A (p.Trp74Ter)Pathogenic
2837872NM_002435.3(MPI):c.44del (p.Gln15fs)Pathogenic

SpliceAI

1805 predictions. Top by Δscore:

VariantEffectΔscore
15:74890525:A:AGacceptor_gain1.0000
15:74890526:G:GGacceptor_gain1.0000
15:74890652:GAG:Gdonor_gain1.0000
15:74890655:G:GAdonor_loss1.0000
15:74890656:T:Adonor_loss1.0000
15:74892647:T:TAacceptor_gain1.0000
15:74892648:G:Aacceptor_gain1.0000
15:74892653:C:Gacceptor_gain1.0000
15:74892656:CACA:Cacceptor_loss1.0000
15:74892657:ACAG:Aacceptor_gain1.0000
15:74892658:CA:Cacceptor_loss1.0000
15:74892659:A:AGacceptor_gain1.0000
15:74892659:AG:Aacceptor_gain1.0000
15:74892660:G:GAacceptor_gain1.0000
15:74892660:GG:Gacceptor_gain1.0000
15:74892660:GGA:Gacceptor_gain1.0000
15:74892776:T:Gdonor_gain1.0000
15:74892799:AAGA:Adonor_gain1.0000
15:74892800:AGA:Adonor_gain1.0000
15:74892801:GA:Gdonor_gain1.0000
15:74892801:GAG:Gdonor_gain1.0000
15:74892801:GAGT:Gdonor_loss1.0000
15:74892802:AGTA:Adonor_loss1.0000
15:74892803:G:GGdonor_gain1.0000
15:74892803:GT:Gdonor_loss1.0000
15:74893136:A:AGacceptor_gain1.0000
15:74893137:G:GGacceptor_gain1.0000
15:74893331:T:Gdonor_gain1.0000
15:74890526:GT:Gacceptor_gain0.9900
15:74890526:GTA:Gacceptor_gain0.9900

AlphaMissense

2776 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
15:74891568:C:GH112D0.998
15:74892720:G:CK135N0.998
15:74892720:G:TK135N0.998
15:74890562:T:AW18R0.997
15:74890562:T:CW18R0.997
15:74891530:A:TK99I0.997
15:74897047:T:AV294D0.997
15:74891531:A:CK99N0.996
15:74891531:A:TK99N0.996
15:74891570:C:AH112Q0.996
15:74891570:C:GH112Q0.996
15:74892718:A:GK135E0.996
15:74896307:C:GH276D0.996
15:74896310:G:CA277P0.996
15:74897042:C:AN292K0.996
15:74897042:C:GN292K0.996
15:74897050:G:CR295P0.996
15:74897199:T:CF345L0.996
15:74897201:C:AF345L0.996
15:74897201:C:GF345L0.996
15:74897711:G:CR418P0.996
15:74890564:G:CW18C0.995
15:74890564:G:TW18C0.995
15:74891382:T:AW50R0.995
15:74891382:T:CW50R0.995
15:74892726:G:CE137D0.995
15:74892726:G:TE137D0.995
15:74892767:T:CF151S0.995
15:74897049:C:AR295S0.995
15:74890654:G:CE48D0.994

dbSNP variants (sampled 300 via entrez): RS1000271905 (15:74902662 CAGCAGG>C), RS1000475684 (15:74890514 T>C), RS1000757267 (15:74897104 G>C), RS1000961058 (15:74898246 A>G), RS1001297444 (15:74891519 C>T), RS1001668310 (15:74889568 C>T), RS1001707559 (15:74895286 C>A), RS1001715109 (15:74901620 G>A), RS1001753261 (15:74895544 G>A), RS1002114464 (15:74890763 G>A,C), RS1002184562 (15:74892146 A>G), RS1002632170 (15:74895682 G>A), RS1002640680 (15:74902318 G>A,C), RS1002704783 (15:74899862 C>G), RS1002733968 (15:74901965 A>C)

Disease associations

OMIM: gene MIM:154550 | disease phenotypes: MIM:602579

GenCC curated gene-disease

DiseaseClassificationInheritance
MPI-congenital disorder of glycosylationDefinitiveAutosomal recessive

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
MPI-congenital disorder of glycosylationDefinitiveAR

Mondo (1): MPI-congenital disorder of glycosylation (MONDO:0011257)

Orphanet (1): MPI-CDG (Orphanet:79319)

HPO phenotypes

38 total (30 of 38 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000107Renal cyst
HP:0000114Proximal tubulopathy
HP:0000707Abnormality of the nervous system
HP:0000821Hypothyroidism
HP:0000825Hyperinsulinemic hypoglycemia
HP:0000969Edema
HP:0001249Intellectual disability
HP:0001252Hypotonia
HP:0001290Generalized hypotonia
HP:0001394Cirrhosis
HP:0001395Hepatic fibrosis
HP:0001399Hepatic failure
HP:0001409Portal hypertension
HP:0001410Decreased liver function
HP:0001508Failure to thrive
HP:0001892Abnormal bleeding
HP:0001929Reduced factor XI activity
HP:0001976Reduced antithrombin III activity
HP:0001977Abnormal thrombosis
HP:0002013Vomiting
HP:0002014Diarrhea
HP:0002239Gastrointestinal hemorrhage
HP:0002240Hepatomegaly
HP:0002243Protein-losing enteropathy
HP:0002570Steatorrhea
HP:0003073Hypoalbuminemia
HP:0003256Abnormality of the coagulation cascade
HP:0003593Infantile onset
HP:0003642Type I transferrin isoform profile

GWAS associations

20 associations (top):

StudyTraitp-value
GCST006190_13Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)3.000000e-16
GCST006190_2Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)8.000000e-21
GCST006190_53Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)1.000000e-21
GCST006190_83Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)7.000000e-25
GCST006192_50Systolic blood pressure x smoking status (ever vs never) interaction (2df test)5.000000e-15
GCST006192_57Systolic blood pressure x smoking status (ever vs never) interaction (2df test)2.000000e-18
GCST006192_73Systolic blood pressure x smoking status (ever vs never) interaction (2df test)1.000000e-12
GCST006192_84Systolic blood pressure x smoking status (ever vs never) interaction (2df test)2.000000e-13
GCST006193_35Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)2.000000e-24
GCST006193_46Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)1.000000e-18
GCST006193_74Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)4.000000e-24
GCST006193_84Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)3.000000e-27
GCST006195_17Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)1.000000e-16
GCST006195_35Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)2.000000e-15
GCST006195_66Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)3.000000e-15
GCST006195_76Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)4.000000e-20
GCST006231_65Mean arterial pressure2.000000e-15
GCST010796_5099Electrocardiogram morphology (amplitude at temporal datapoints)1.000000e-09
GCST010796_5100Electrocardiogram morphology (amplitude at temporal datapoints)6.000000e-09
GCST90002404_369Red cell distribution width1.000000e-11

EFO canonical traits (6, from GWAS)

EFO IDTrait name
EFO:0006336diastolic blood pressure
EFO:0006527smoking status measurement
EFO:0006335systolic blood pressure
EFO:0006340mean arterial pressure
EFO:0004327electrocardiography
EFO:0009188Red cell distribution width

MeSH disease descriptors (1)

DescriptorNameTree numbers
C535740Congenital disorder of glycosylation type 1B (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL2758 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 18,515 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL3187985APOMORPHINE HYDROCHLORIDE45,278
CHEMBL51085EBSELEN313,237

PharmGKB: 1 entry (VIP=true, CPIC=false)

Binding affinities (BindingDB)

322 measured of 684 human assays (720 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
2,6,7-trihydroxy-9-(2,4,5-trimethoxyphenyl)-3-xanthenoneEC50258 nM
1,4-diketo-3-(4-methoxyphenyl)naphthalene-2-carboxylic acid ethyl esterIC50322 nM
2-methylbenzo-1,4-quinone 4-[O-(3,4,5-trimethoxybenzoyl)oxime]IC50623 nM
2-(4-fluorophenyl)-4,6-dinitro-1,2-benzothiazol-3-oneIC50709 nM
(4E)-4-[[2-[2-(3,5-dimethylpyrazol-1-yl)-6-methyl-pyrimidin-4-yl]hydrazinyl]methylidene]-3-oxidanyl-cyclohexa-2,5-dien-1-oneEC50831 nM
(Z)-(4-chlorodithiazol-5-ylidene)-(5-methyl-1,3,4-oxadiazol-2-yl)amineIC501070 nM
5-hydroxy-4-[[4-(2-hydroxyethyl)-1-piperazinyl]methyl]-2-methyl-3-benzo[g]benzofurancarboxylic acid ethyl esterIC501130 nM
1-ethyl-5-methyl-4-[(phenylsulfonyl)methyl]-1,3-dihydro-2H-imidazol-2-oneIC501230 nM
2-(2-fluorophenyl)-4,6-dinitro-1,2-benzothiazol-3-oneIC501450 nM
MLS000392355IC501490 nM
MLS-0315804.0001IC501590 nM
1,3,6-Trimethyl-1H-pyrimido[5,4-e][1,2,4]triazine-5,7-dioneEC501610 nM
1,6-dimethyl-3-propyl-pyrimido[5,4-e][1,2,4]triazine-5,7-dioneEC501770 nM
2-(4-chlorophenyl)-5-fluoranyl-1,2-benzothiazol-3-oneIC501770 nM
(4E)-4-[[[4-(2-furanyl)-2-(2-methoxyethylimino)-3-thiazolyl]amino]methylidene]-2,3-dihydroxy-1-cyclohexa-2,5-dienoneEC501810 nM
5-(3-chlorophenyl)-1,2-dihydro-1,2,4-triazole-3-thioneIC501940 nM
5-amino-N’-(4-chlorobenzylidene)-4-oxo-3-phenyl-3,4-dihydrothieno[3,4-d]pyridazine-1-carbohydrazideIC501950 nM
MLS000548244IC502100 nM
2-[4-[chloranyl-bis(fluoranyl)methoxy]phenyl]-4,6-dinitro-1,2-benzothiazol-3-oneIC502140 nM
(Z)-(4-chlorodithiazol-5-ylidene)-(1,3,4-thiadiazol-2-yl)amineIC502300 nM
3-[3-(3-bromophenyl)-4-[(4,6-diketo-2-thioxo-hexahydropyrimidin-5-ylidene)methyl]pyrazol-1-yl]propionic acidIC502390 nM
2-(4-chlorophenyl)-1,2-benzothiazol-3-oneIC502450 nM
4-bromanyl-2-(4-methoxyphenyl)-6-methyl-benzotriazol-5-amineIC502530 nM
1-[[1-(4-methoxyphenyl)-3-pyrrolidinyl]methyl]-3-phenylureaIC502580 nM
(3-chloro-4-ethoxy-5-methoxy-benzyl)-(4-pyrrolidinophenyl)amineIC502690 nM
MLS000121202IC502710 nM
MLS000684518IC502720 nM
2-[(6,7-dihydroxy-2-keto-chromen-4-yl)methylthio]-3-(3-methoxyphenyl)quinazolin-4-oneIC502720 nM
(4E)-2,3-dihydroxy-4-[[(4-methyl-2-methylimino-1,3-thiazol-3-yl)amino]methylidene]cyclohexa-2,5-dien-1-oneIC502720 nM
7-[[4-(2-hydroxyethyl)-1-piperazinyl]-thiophen-2-ylmethyl]-8-quinolinolIC502820 nM
2-(3-chloranyl-2-methyl-phenyl)-6-nitro-4-[2,2,2-tris(fluoranyl)ethoxy]-1,2-benzothiazol-3-oneIC503030 nM
2-(4-bromophenyl)-3-ethanoyl-naphthalene-1,4-dioneIC503130 nM
1-(3-methoxyphenyl)-3-[[1-(4-methoxyphenyl)-3-pyrrolidinyl]methyl]ureaIC503180 nM
(4-chlorodithiazol-5-ylidene)-(2-methoxy-4-nitro-phenyl)amineIC503250 nM
2-(3-chlorophenyl)-1,2-benzothiazol-3-oneIC503430 nM
(+)-haematoxylinIC503440 nM
(4-chlorodithiazol-5-ylidene)-(2,4-dinitrophenyl)amineIC503520 nM
MLS000759648IC503520 nM
2,6,7-Trihydroxy-9-methyl-xanthen-3-oneIC503600 nM
(3-chloro-4,5-dimethoxy-benzyl)-(4-pyrrolidinophenyl)amineEC503720 nM
MLS000571067IC503730 nM
6,7-bis(oxidanyl)-4-[[5-(3,4,5-trimethoxyphenyl)-1,3,4-oxadiazol-2-yl]sulfanylmethyl]chromen-2-oneIC503770 nM
5-Amino-4-cyano-3-methyl-thiophene-2-carboxylic acid [5-(2-nitro-phenyl)-furan-2-ylmethylene]-hydrazideIC503780 nM
5-(2,3-dihydro-1,4-benzodioxin-3-yl)-1,2-dihydro-1,2,4-triazole-3-thioneIC503890 nM
4-[(3-carbethoxy-5-hydroxy-2-methyl-benzo[g]benzofuran-4-yl)methyl]piperazine-1-carboxylic acid ethyl esterIC503950 nM
SMR000152103IC504090 nM
4-[(4-chloranyl-1,2,3-dithiazol-5-ylidene)amino]benzenecarbonitrileIC504140 nM
5-[(6-Bromo-2-hydroxy-naphthalen-1-ylmethylene)-amino]-1,3-dihydro-benzoimidazol-2-oneEC504150 nM
2-(3-methoxyphenyl)-1,2-benzothiazol-3-oneIC504190 nM
3,4,5-trihydroxy-N’-((1E)-{4-methoxy-3-[(4-nitro-1H-pyrazol-1-yl)methyl]phenyl}methylene)benzohydrazideIC504310 nM

ChEMBL bioactivities

170 potent at pChembl≥5 of 395 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
6.72IC50190nMEBSELEN
6.57IC50270nMCHEMBL1410147
6.15IC50710nMCHEMBL1333250
6.15IC50707nMCHEMBL1333250
6.15IC50709nMCHEMBL1714665
6.08IC50828.8nMCHEMBL1993627
6.01IC50985nMCHEMBL1725120
6.00IC501000nMCHEMBL1706034
6.00IC501000nMCHEMBL1725120
6.00IC501000nMCHEMBL1314602
5.99IC501030nMCHEMBL1314602
5.97IC501070nMCHEMBL1732102
5.96IC501100nMCHEMBL1725120
5.91IC501227nMCHEMBL1390840
5.90IC501250nMCHEMBL1406130
5.89IC501300nMCHEMBL1703200
5.89IC501273nMCHEMBL1392651
5.89IC501300nMCHEMBL1406130
5.85IC501423nMCHEMBL1335945
5.84IC501450nMCHEMBL1732623
5.83IC501490nMCHEMBL1520143
5.82IC501499nMCHEMBL1410147
5.80IC501590nMCHEMBL1725977
5.78IC501670nMCHEMBL1449845
5.75IC501770nMCHEMBL1701846
5.75IC501800nMCHEMBL1701846
5.73IC501880nMCHEMBL1601716
5.72IC501900nMCHEMBL98386
5.72IC501900nMCHEMBL1714438
5.72IC501900nMCHEMBL1601716
5.71IC501940nMCHEMBL1352830
5.68IC502101nMCHEMBL1392651
5.67IC502140nMCHEMBL1717022
5.65IC502250nMCHEMBL1411202
5.64IC502300nMCHEMBL1411202
5.64IC502300nMCHEMBL1717825
5.61IC502450nMCHEMBL98386
5.58IC502600nMCHEMBL1371792
5.58IC502650nMCHEMBL1391552
5.57IC502708nMCHEMBL3199050
5.57IC502680nMCHEMBL1553163
5.55IC502800nMCHEMBL1339149
5.55IC502790nMCHEMBL1339149
5.54IC502905nMCHEMBL1310318
5.54IC502910nMCHEMBL1321637
5.54IC502900nMCHEMBL1310318
5.52IC503030nMCHEMBL1726776
5.51IC503100nMCHEMBL1423690
5.51IC503100nMCHEMBL1717825
5.51IC503120nMCHEMBL1718013

PubChem BioAssay actives

49 with measured affinity, of 69 total; 39 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-[[3-(3-oxo-1,2-benzothiazol-2-yl)phenyl]sulfonylamino]benzoic acid1187642: Inhibition of phosphomannose isomerase (unknown origin)ic500.7100uM
2-(2,5-dimethylphenyl)-6-fluoro-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.0000uM
6-fluoro-2-(4-methoxyphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic501.0000uM
5-fluoro-2-(4-methoxyphenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.0000uM
6-fluoro-2-phenyl-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic501.3000uM
5-fluoro-2-phenyl-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.3000uM
2-(4-chlorophenyl)-5-fluoro-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.8000uM
2-(4-chlorophenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.9000uM
2-(2,5-dimethylphenyl)-5-fluoro-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.9000uM
2-[4-(dimethylamino)phenyl]-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic501.9000uM
N-benzyl-3-(3-oxo-1,2-benzothiazol-2-yl)benzamide1187642: Inhibition of phosphomannose isomerase (unknown origin)ic502.3000uM
2-(2-morpholin-4-yl-5-morpholin-4-ylsulfonylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic502.6000uM
N,N-dimethyl-3-(3-oxo-1,2-benzothiazol-2-yl)benzenesulfonamide1187642: Inhibition of phosphomannose isomerase (unknown origin)ic502.8000uM
6-fluoro-2-(2-methylphenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic502.9000uM
2-(4-methyl-3-piperidin-1-ylsulfonylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic503.1000uM
3-(3-oxo-1,2-benzothiazol-2-yl)benzoic acid1187642: Inhibition of phosphomannose isomerase (unknown origin)ic503.3000uM
2-[3-(trifluoromethyl)phenyl]-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic503.4000uM
2-(4-fluorophenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic503.4000uM
6-fluoro-2-(4-fluorophenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic503.6000uM
5-fluoro-2-(4-fluorophenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic503.6000uM
2-(3-methoxyphenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic503.7000uM
2-(4-methylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic503.9000uM
2-[4-(2,4-dichlorophenoxy)butanoylamino]-1,3-dihydroindene-2-carboxamide225397: Compound was evaluated for the inhibition constant against phosphomannose isomerase enzyme of Candida albicans (CaPMI)ki4.0000uM
2-[4-(3,4-dichlorophenyl)sulfanylbutanoylamino]-N-hydroxy-1,3-dihydroindene-2-carboxamide225397: Compound was evaluated for the inhibition constant against phosphomannose isomerase enzyme of Candida albicans (CaPMI)ki4.0000uM
2-(3-iodophenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic504.3000uM
5-fluoro-2-(2-fluorophenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic504.3000uM
2-(3-chlorophenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic504.8000uM
methyl 3-(3-oxo-1,2-benzothiazol-2-yl)benzoate1187642: Inhibition of phosphomannose isomerase (unknown origin)ic504.9000uM
2-(4-tert-butylphenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic505.0000uM
2-(3-methylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic506.0000uM
2-phenyl-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic506.4000uM
2-(2,5-dimethylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic506.6000uM
ethyl 4-(3-oxo-1,2-benzothiazol-2-yl)benzoate597374: Inhibition of human purified phosphomannose isomeraseic507.2000uM
2-(5-morpholin-4-ylsulfonyl-2-pyrrolidin-1-ylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic507.5000uM
5-fluoro-2-(3-fluorophenyl)-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic508.3000uM
2-[3-(dimethylamino)phenyl]-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic508.5000uM
2-(4-chloro-3-morpholin-4-ylsulfonylphenyl)-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic508.6000uM
2-naphthalen-2-yl-1,2-benzothiazol-3-one597374: Inhibition of human purified phosphomannose isomeraseic509.4000uM
2-(2,3-dimethylphenyl)-6-fluoro-1,2-benzothiazol-3-one1187642: Inhibition of phosphomannose isomerase (unknown origin)ic509.9000uM

CTD chemical–gene interactions

48 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Aaffects expression, decreases expression, increases expression, decreases reaction, increases abundance3
sodium arsenitedecreases expression, increases abundance2
Arsenicincreases methylation, decreases expression, increases abundance2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Cyclosporinedecreases expression, increases expression2
p-Chloromercuribenzoic Aciddecreases expression, affects cotreatment2
aristolochic acid Idecreases expression1
ginger extractdecreases expression, decreases reaction, increases abundance1
dicrotophosincreases expression1
methylmercuric chloridedecreases expression1
triphenyl phosphateaffects expression1
sodium arsenatedecreases expression1
beta-lapachonedecreases expression, increases expression1
arseniteaffects binding, increases reaction1
tris(1,3-dichloro-2-propyl)phosphatedecreases expression1
potassium chromate(VI)affects cotreatment, decreases expression1
cupric chloridedecreases expression1
epigallocatechin gallateaffects cotreatment, decreases expression1
di-n-butylphosphoric acidaffects expression1
perfluorooctane sulfonic acidincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
bisphenol Bincreases expression1
dorsomorphinaffects cotreatment, decreases expression1
jinfukangaffects cotreatment, increases expression1
NSC 689534affects binding, decreases expression1
Temozolomideincreases expression1
Sunitinibincreases expression1
Acetaminophendecreases expression1
Air Pollutantsaffects expression, increases abundance1
Amiodaroneincreases expression1

ChEMBL screening assays

14 unique, capped per target: 14 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1613774BindingPUBCHEM_BIOASSAY: Confirmation of compounds inhibiting phosphomannose isomerase (PMI) via a fluorescence intensity assay using a high concentration of mannose 6-phosphate. (Class of assay: confirmatory) [Related pubchem assays (depositor dePubChem BioAssay data set

Cellosaurus cell lines

5 cell lines: 3 cancer cell line, 1 transformed cell line, 1 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B9W3Abcam HEK293T MPI KOTransformed cell lineFemale
CVCL_C9JJSDQLCHi059-AInduced pluripotent stem cellFemale
CVCL_E1IVHyCyte A-549 KO-hMPICancer cell lineMale
CVCL_SY81HAP1 MPI (-) 1Cancer cell lineMale
CVCL_SY82HAP1 MPI (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

2 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT03404869PHASE1/PHASE2UNKNOWNStudy of ORL-1M (D-mannose) in Patients With CDG-Ib
NCT03655223Not specifiedENROLLING_BY_INVITATIONEarly Check: Expanded Screening in Newborns