MRAP
gene geneOn this page
Also known as B27FALPMRAP1
Summary
MRAP (melanocortin 2 receptor accessory protein, HGNC:1304) is a protein-coding gene on chromosome 21q22.11, encoding Melanocortin-2 receptor accessory protein (Q8TCY5). Modulator of melanocortin receptors (MC1R, MC2R, MC3R, MC4R and MC5R).
This gene encodes a melanocortin receptor-interacting protein. The encoded protein regulates trafficking and function of the melanocortin 2 receptor in the adrenal gland. The encoded protein can also modulate signaling of other melanocortin receptors. Mutations in this gene have been associated with familial glucocorticoid deficiency type 2. Alternatively spliced transcript variants have been described.
Source: NCBI Gene 56246 — RefSeq curated summary.
At a glance
- Gene–disease (curated): glucocorticoid deficiency 2 (Definitive, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 58 total — 8 pathogenic
- Phenotypes (HPO): 56
- MANE Select transcript:
NM_001379228
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1304 |
| Approved symbol | MRAP |
| Name | melanocortin 2 receptor accessory protein |
| Location | 21q22.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | B27, FALP, MRAP1 |
| Ensembl gene | ENSG00000170262 |
| Ensembl biotype | protein_coding |
| OMIM | 609196 |
| Entrez | 56246 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000303645, ENST00000339944, ENST00000399784, ENST00000497833, ENST00000961467
RefSeq mRNA: 4 — MANE Select: NM_001379228
NM_001285394, NM_001379228, NM_178817, NM_206898
CCDS: CCDS13612, CCDS13613
Canonical transcript exons
ENST00000303645 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001819828 | 32298855 | 32299077 |
| ENSE00003497665 | 32306640 | 32306739 |
| ENSE00003624361 | 32311684 | 32312290 |
Expression profiles
Bgee: expression breadth ubiquitous, 154 present calls, max score 97.83.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.9577 / max 174.4470, expressed in 76 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 188802 | 0.5518 | 61 |
| 188804 | 0.3514 | 50 |
| 188803 | 0.0545 | 26 |
Top tissues by expression
243 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right adrenal gland | UBERON:0001233 | 97.83 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.65 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.50 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.34 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 96.61 | gold quality |
| adrenal cortex | UBERON:0001235 | 96.32 | gold quality |
| adrenal gland | UBERON:0002369 | 95.72 | gold quality |
| adipose tissue | UBERON:0001013 | 90.98 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 90.21 | gold quality |
| omental fat pad | UBERON:0010414 | 89.98 | gold quality |
| peritoneum | UBERON:0002358 | 89.85 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 89.81 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 88.95 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.96 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 76.99 | gold quality |
| mammary gland | UBERON:0001911 | 76.66 | gold quality |
| skin of hip | UBERON:0001554 | 75.39 | gold quality |
| pericardium | UBERON:0002407 | 71.63 | gold quality |
| mammary duct | UBERON:0001765 | 68.80 | silver quality |
| left coronary artery | UBERON:0001626 | 68.00 | gold quality |
| tibial nerve | UBERON:0001323 | 66.35 | gold quality |
| coronary artery | UBERON:0001621 | 66.22 | gold quality |
| upper leg skin | UBERON:0004262 | 64.29 | silver quality |
| hindlimb stylopod muscle | UBERON:0004252 | 62.92 | gold quality |
| right lobe of liver | UBERON:0001114 | 62.73 | gold quality |
| right lung | UBERON:0002167 | 62.67 | gold quality |
| sural nerve | UBERON:0015488 | 61.83 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 61.14 | gold quality |
| mucosa of stomach | UBERON:0001199 | 60.56 | gold quality |
| left ovary | UBERON:0002119 | 60.34 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.61 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): JUN, PPARG, SP1
miRNA regulators (miRDB)
19 targeting MRAP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-221-3P | 99.86 | 71.56 | 1329 |
| HSA-MIR-222-3P | 99.86 | 71.35 | 1337 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-3685 | 99.62 | 68.83 | 1621 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-7158-5P | 99.25 | 67.95 | 796 |
| HSA-MIR-6878-3P | 99.24 | 64.23 | 920 |
| HSA-MIR-6744-3P | 99.22 | 64.41 | 972 |
| HSA-MIR-4757-5P | 99.12 | 64.51 | 981 |
| HSA-MIR-6792-5P | 98.39 | 68.16 | 1330 |
| HSA-MIR-1301-5P | 98.09 | 66.62 | 495 |
| HSA-MIR-6502-5P | 98.09 | 66.73 | 495 |
| HSA-MIR-6881-3P | 98.04 | 68.24 | 1777 |
| HSA-MIR-6821-3P | 95.21 | 66.79 | 578 |
Literature-anchored findings (GeneRIF, showing 21)
- We identified mutations in a protein, now known as melanocortin 2 receptor accessory protein (MRAP). We show that MRAP interacts with MC2R and may have a role in the trafficking of MC2R from the endoplasmic reticulum to the cell surface. (PMID:15654338)
- MC2R-green fluorescent protein fusion transfected with either MRAPalpha or MRAPbeta was impaired both in cell membrane localization and signaling. (PMID:17456795)
- Familial glucocorticoid deficiency type 2, confirmed by a mutation of the MRAP gene. (PMID:17893271)
- MRAP is the first eukaryotic membrane protein identified with an antiparallel homodimeric structure. (PMID:18077336)
- The transmembrane domain of MRAP is the MC2R interaction domain and a conserved N-terminal tyrosine-rich domain of MRAP is required for trafficking MC2R to the cell surface. (PMID:18818285)
- MRAP not only facilitates MC2 receptor trafficking but also allows properly localized receptor to bind ACTH and consequently signal. (PMID:18981183)
- identify MRAP and MRAP2 as unique bidirectional regulators of the melanocortin receptor family (PMID:19329486)
- Data show that tall stature is associated with mutations in MC2R but not in MRAP. (PMID:19558534)
- No mutations in MC2R, MRAP or STAR were identified in any patient with Addison’s disease (PMID:19903795)
- study shows that novel missense mutations in MRAP are associated with a milder, late onset phenotype in two families with familial glucocorticoid deficiency (PMID:20427498)
- The MRAP promoter is activated by serum depletion according to promoter reporter assays in HEK 293 cells. (PMID:20494980)
- ACTH binding to MC2R stimulates PKA-dependent p44/p42(mapk) phosphorylation. (PMID:21195128)
- A novel MRAP mutation is identified in a neonate where disruption of intron 3 splice-site results in a prematurely terminated translation product causing complete lack of adrenocorticotrophic (ADTH) hormone receptor response. (PMID:21951701)
- The data suggest that MRAPalpha is involved in MC2R targeting to the plasma membrane, while MRAPbeta may enhance ACTH-MC2R coupling to cAMP production. (PMID:22366472)
- MRAP is positively regulated by ACTH and AngII in human adrenocortical tissues. (PMID:22419722)
- Data suggest that MRAP regulates expression of melanocortin receptors (MC1R-MC5R); MRAP is highly expressed in both zona fasciculata and undifferentiated zone of adrenal gland, sites of MC2R-mediated adrenal steroidogenesis. [REVIEW] (PMID:23418361)
- The results firmly establish that only the copy of MRAP oriented with the amino terminus on the extracellular side of the receptor is essential for Adrenocorticotropic Hormone signal transduction. (PMID:26424796)
- Data show that co-expression with MRAPalpha, but not MRAP2, enhances MC4R constitutive activity. MRAPalpha-enhanced MC4R constitutive activity is not dependent on MC4R complex glycosylation but may result from MRAPalpha-induced changes in MC4R conformational states. (PMID:26469516)
- MRAP expression in human cell line results in an ACTH responsive phenotype. (PMID:26576642)
- allele of the 5 insertion/deletion polymorphism in the Alpha-2-MRAP gene is related with an increase of oxidative stress in nephrolithiasis patients (PMID:28760704)
- Data (including data from studies in transgenic mice) suggest that MRAP plays critical role in (1) regulation of lipolysis in adipose tissue, (2) regulation of enzyme expression in adipose tissue, and (3) whole-body energy balance. (PMID:29217655)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Mrap | ENSMUSG00000039956 |
| rattus_norvegicus | Mrap | ENSRNOG00000021524 |
Protein
Protein identifiers
Melanocortin-2 receptor accessory protein — Q8TCY5 (reviewed: Q8TCY5)
Alternative names: B27, Fat cell-specific low molecular weight protein, Fat tissue-specific low MW protein
All UniProt accessions (1): Q8TCY5
UniProt curated annotations — full annotation on UniProt →
Function. Modulator of melanocortin receptors (MC1R, MC2R, MC3R, MC4R and MC5R). Acts by increasing ligand-sensitivity of melanocortin receptors and enhancing generation of cAMP by the receptors. Required both for MC2R trafficking to the cell surface of adrenal cells and for signaling in response to corticotropin (ACTH). May be involved in the intracellular trafficking pathways in adipocyte cells.
Subunit / interactions. Homodimer and heterodimer. Forms antiparallel homodimers and heterodimers with MRAP2. Interacts with MC1R, MC2R, MC3R, MC4R and MC5R.
Subcellular location. Cell membrane. Endoplasmic reticulum membrane.
Tissue specificity. Expressed in adrenal cortex, testis, breast, thyroid, lymph node, ovary and fat. Expressed in adipose tissues.
Disease relevance. Glucocorticoid deficiency 2 (GCCD2) [MIM:607398] A form of glucocorticoid deficiency, a rare autosomal recessive disorder characterized by resistance to ACTH action on the adrenal cortex, adrenal insufficiency and an inability of the adrenal cortex to produce cortisol. It usually presents in the neonatal period or in early childhood with episodes of hypoglycemia and other symptoms related to cortisol deficiency, including failure to thrive, recurrent illnesses or infections, convulsions, and shock. In a small number of patients hypoglycemia can be sufficiently severe and persistent that it leads to serious long-term neurological damage or death. The diagnosis is readily confirmed with a low plasma cortisol measurement in the presence of an elevated ACTH level, and normal aldosterone and plasma renin measurements. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the MRAP family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8TCY5-4 | 4 | yes |
| Q8TCY5-1 | 1, Alpha, MRAP-alpha | |
| Q8TCY5-2 | 2, Beta, MRAP-beta | |
| Q8TCY5-3 | 3, Short |
RefSeq proteins (4): NP_001272323, NP_001366157, NP_848932, NP_996781 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR028111 | MRAP | Family |
Pfam: PF15183
UniProt features (11 total): splice variant 4, region of interest 2, chain 1, transmembrane region 1, helix 1, strand 1, turn 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8GY7 | ELECTRON MICROSCOPY | 3.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TCY5-F1 | 58.50 | 0.11 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 212 (showing top):
GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_LOCALIZATION, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, MARTINEZ_RB1_TARGETS_UP, GOBP_REGULATION_OF_CELLULAR_LOCALIZATION, GOMF_G_PROTEIN_COUPLED_RECEPTOR_BINDING, GOMF_SIGNALING_RECEPTOR_BINDING, GOBP_LOCALIZATION_WITHIN_MEMBRANE, chr21q22, MARTINEZ_RB1_AND_TP53_TARGETS_UP, BURTON_ADIPOGENESIS_6, GOCC_NUCLEAR_OUTER_MEMBRANE_ENDOPLASMIC_RETICULUM_MEMBRANE_NETWORK, GOBP_ADENYLATE_CYCLASE_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, GOCC_ORGANELLE_SUBCOMPARTMENT, GOMF_NEUROPEPTIDE_RECEPTOR_BINDING
GO Biological Process (5): protein localization to plasma membrane (GO:0072659), regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0106070), positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0106071), negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0106072), negative regulation of protein localization to plasma membrane (GO:1903077)
GO Molecular Function (8): signaling receptor regulator activity (GO:0030545), corticotropin hormone receptor binding (GO:0031780), type 3 melanocortin receptor binding (GO:0031781), type 4 melanocortin receptor binding (GO:0031782), type 5 melanocortin receptor binding (GO:0031783), identical protein binding (GO:0042802), type 1 melanocortin receptor binding (GO:0070996), protein binding (GO:0005515)
GO Cellular Component (4): endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| melanocortin receptor binding | 5 |
| adenylate cyclase-activating G protein-coupled receptor signaling pathway | 3 |
| regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway | 2 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| regulation of G protein-coupled receptor signaling pathway | 1 |
| positive regulation of G protein-coupled receptor signaling pathway | 1 |
| negative regulation of G protein-coupled receptor signaling pathway | 1 |
| protein localization to plasma membrane | 1 |
| regulation of protein localization to plasma membrane | 1 |
| negative regulation of protein localization to cell periphery | 1 |
| negative regulation of protein localization to membrane | 1 |
| signaling receptor activity | 1 |
| molecular function regulator activity | 1 |
| protein binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
328 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MRAP | MC2R | Q01718 | 985 |
| MRAP | POMC | P01189 | 893 |
| MRAP | FGD3 | Q5JSP0 | 808 |
| MRAP | MC4R | P32245 | 726 |
| MRAP | FGD1 | P98174 | 609 |
| MRAP | MC5R | P33032 | 589 |
| MRAP | MC3R | P41968 | 572 |
| MRAP | CRH | P06850 | 482 |
| MRAP | MC1R | Q01726 | 451 |
| MRAP | REN | P00797 | 444 |
| MRAP | NPS | P0C0P6 | 435 |
| MRAP | GNAS | Q5JWF2 | 428 |
| MRAP | CRHR2 | Q13324 | 401 |
| MRAP | STAR | P49675 | 400 |
| MRAP | CYP21A2 | P04033 | 397 |
IntAct
24 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MRAP | MRAP | psi-mi:“MI:0915”(physical association) | 0.570 |
| MRAP2 | MRAP | psi-mi:“MI:0915”(physical association) | 0.570 |
| MRAP | MC2R | psi-mi:“MI:0915”(physical association) | 0.570 |
| MRAP | CHAT | psi-mi:“MI:0915”(physical association) | 0.560 |
| MRAP | FGFR3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MRAP | MC3R | psi-mi:“MI:0915”(physical association) | 0.400 |
| MRAP | MC5R | psi-mi:“MI:0915”(physical association) | 0.400 |
| MC1R | MRAP | psi-mi:“MI:0915”(physical association) | 0.400 |
| MRAP | MC4R | psi-mi:“MI:0915”(physical association) | 0.400 |
| MRAP | RPL15 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (5): MRAP (Proximity Label-MS), MRAP (Two-hybrid), MRAP (Positive Genetic), MRAP (Affinity Capture-Western), MRAP (Affinity Capture-Western)
ESM2 similar proteins: A1A519, A6NFK2, A6NI87, D3Z1Q2, F1N8V3, F8W4H9, P0C7M3, P0DM64, P0DO92, P10544, Q0VFL4, Q2YDG1, Q3TYR5, Q495C1, Q4R989, Q503Y8, Q5SXH7, Q5TC04, Q5XEM9, Q640B5, Q66HF0, Q66LM5, Q68CR7, Q68UT4, Q6DGF6, Q6NUI1, Q6PCX9, Q6TXF5, Q76N89, Q7L4S7, Q7TP54, Q86UQ5, Q8C4X7, Q8C9R9, Q8CEZ0, Q8K0B3, Q8K3A6, Q8K4P8, Q8K4S1, Q8TCY5
Diamond homologs: D3Z1Q2, F8W4H9, P0DM64, Q68UT4, Q8TCY5, Q96G30, Q9D159
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MRAP | “up-regulates activity” | MC2R | binding |
| MRAP | “down-regulates activity” | MC4R | binding |
| MRAP | “down-regulates activity” | MC1R | binding |
| MRAP | “down-regulates activity” | MC3R | binding |
| MRAP | “down-regulates activity” | MC5R | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
58 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 0 |
| Uncertain significance | 35 |
| Likely benign | 9 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1836 | NM_001379228.1(MRAP):c.106+1G>T | Pathogenic |
| 1837 | NM_001379228.1(MRAP):c.106+1G>C | Pathogenic |
| 1838 | NM_001379228.1(MRAP):c.106+1G>A | Pathogenic |
| 1840 | NM_001379228.1(MRAP):c.106+3_106+4insT | Pathogenic |
| 1841 | NM_001379228.1(MRAP):c.3G>A (p.Met1Ile) | Pathogenic |
| 1843 | NM_001379228.1(MRAP):c.17_23del (p.Asn6fs) | Pathogenic |
| 444067 | NM_001379228.1(MRAP):c.1A>G (p.Met1Val) | Pathogenic |
| 444068 | NM_001379228.1(MRAP):c.106+1del | Pathogenic |
SpliceAI
836 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:32304016:GT:G | donor_gain | 0.9900 |
| 21:32306634:CCGCA:C | acceptor_loss | 0.9900 |
| 21:32306635:CGCAG:C | acceptor_loss | 0.9900 |
| 21:32306636:GCA:G | acceptor_loss | 0.9900 |
| 21:32306637:CAGAT:C | acceptor_loss | 0.9900 |
| 21:32306638:A:AG | acceptor_gain | 0.9900 |
| 21:32306638:A:C | acceptor_loss | 0.9900 |
| 21:32306639:G:GG | acceptor_gain | 0.9900 |
| 21:32306735:A:G | donor_gain | 0.9900 |
| 21:32306736:TGAG:T | donor_loss | 0.9800 |
| 21:32306737:GAGG:G | donor_loss | 0.9800 |
| 21:32306738:AG:A | donor_loss | 0.9800 |
| 21:32306739:GGT:G | donor_loss | 0.9800 |
| 21:32306740:GTGG:G | donor_gain | 0.9800 |
| 21:32306741:T:G | donor_loss | 0.9800 |
| 21:32299078:G:GG | donor_gain | 0.9700 |
| 21:32304018:GTC:G | donor_gain | 0.9700 |
| 21:32306742:GG:G | donor_gain | 0.9700 |
| 21:32306743:GG:G | donor_gain | 0.9700 |
| 21:32304000:A:G | donor_gain | 0.9600 |
| 21:32299074:AAACG:A | donor_loss | 0.9400 |
| 21:32299075:AACG:A | donor_loss | 0.9400 |
| 21:32299076:ACGTA:A | donor_loss | 0.9400 |
| 21:32299077:CGTAA:C | donor_loss | 0.9400 |
| 21:32299078:G:A | donor_loss | 0.9400 |
| 21:32299079:T:TG | donor_loss | 0.9400 |
| 21:32299080:AA:A | donor_loss | 0.9400 |
| 21:32306639:GA:G | acceptor_gain | 0.9400 |
| 21:32310078:G:T | donor_gain | 0.9400 |
| 21:32299076:AC:A | donor_gain | 0.9300 |
AlphaMissense
1121 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:32306666:A:C | S45R | 0.991 |
| 21:32306668:C:A | S45R | 0.991 |
| 21:32306668:C:G | S45R | 0.991 |
| 21:32306660:T:A | W43R | 0.967 |
| 21:32306660:T:C | W43R | 0.967 |
| 21:32306678:T:C | F49L | 0.947 |
| 21:32306680:C:A | F49L | 0.947 |
| 21:32306680:C:G | F49L | 0.947 |
| 21:32299027:A:T | D19V | 0.931 |
| 21:32299076:A:C | K35N | 0.927 |
| 21:32299076:A:T | K35N | 0.927 |
| 21:32299026:G:C | D19H | 0.912 |
| 21:32306655:C:A | A41E | 0.901 |
| 21:32306673:C:A | A47D | 0.898 |
| 21:32306670:T:C | L46P | 0.884 |
| 21:32299015:A:T | E15V | 0.879 |
| 21:32306676:C:A | A48D | 0.878 |
| 21:32299027:A:C | D19A | 0.875 |
| 21:32306691:T:G | L53R | 0.875 |
| 21:32299017:T:C | Y16H | 0.871 |
| 21:32306646:T:A | I38N | 0.862 |
| 21:32299028:C:A | D19E | 0.860 |
| 21:32299028:C:G | D19E | 0.860 |
| 21:32306662:G:C | W43C | 0.857 |
| 21:32306662:G:T | W43C | 0.857 |
| 21:32306703:T:C | L57S | 0.857 |
| 21:32299018:A:G | Y16C | 0.851 |
| 21:32306691:T:A | L53H | 0.851 |
| 21:32306693:T:C | F54L | 0.844 |
| 21:32306695:C:A | F54L | 0.844 |
dbSNP variants (sampled 300 via entrez): RS1000024618 (21:32307025 G>C), RS1000180123 (21:32312570 G>A), RS1000196999 (21:32296209 C>A), RS1000499054 (21:32307382 G>A,C), RS1000556129 (21:32300697 G>A,C), RS1000971863 (21:32304606 T>A,C), RS1001201948 (21:32306624 TCTC>T), RS1001304261 (21:32312193 T>C), RS1001645019 (21:32306977 C>T), RS1001814524 (21:32298007 G>A), RS1001822262 (21:32301314 T>C), RS1001865281 (21:32292642 A>G), RS1001897417 (21:32290417 G>A,T), RS1001948745 (21:32297642 T>C), RS1001996783 (21:32302272 T>C)
Disease associations
OMIM: gene MIM:609196 | disease phenotypes: MIM:607398, MIM:202200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| glucocorticoid deficiency 2 | Definitive | Autosomal recessive |
| familial glucocorticoid deficiency | Supportive | Autosomal recessive |
Mondo (3): glucocorticoid deficiency 2 (MONDO:0011826), glucocorticoid deficiency 1 (MONDO:0024536), familial glucocorticoid deficiency (MONDO:0008733)
Orphanet (1): Familial glucocorticoid deficiency (Orphanet:361)
HPO phenotypes
56 total (30 of 56 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000010 | Recurrent urinary tract infections |
| HP:0000027 | Azoospermia |
| HP:0000028 | Cryptorchidism |
| HP:0000098 | Tall stature |
| HP:0000127 | Renal salt wasting |
| HP:0000252 | Microcephaly |
| HP:0000522 | Alacrima |
| HP:0000826 | Precocious puberty |
| HP:0000846 | Adrenal insufficiency |
| HP:0000851 | Congenital hypothyroidism |
| HP:0000953 | Hyperpigmentation of the skin |
| HP:0001249 | Intellectual disability |
| HP:0001285 | Spastic tetraparesis |
| HP:0001325 | Hypoglycemic coma |
| HP:0001336 | Myoclonus |
| HP:0001508 | Failure to thrive |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001824 | Weight loss |
| HP:0001943 | Hypoglycemia |
| HP:0001988 | Recurrent hypoglycemia |
| HP:0002013 | Vomiting |
| HP:0002014 | Diarrhea |
| HP:0002019 | Constipation |
| HP:0002039 | Anorexia |
| HP:0002153 | Hyperkalemia |
| HP:0002173 | Hypoglycemic seizures |
| HP:0002187 | Profound intellectual disability |
| HP:0002445 | Tetraplegia |
| HP:0002571 | Achalasia |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C565974 | Familial Glucocorticoid Deficiency 1 (supp.) | |
| C564577 | Glucocorticoid Deficiency 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol S | increases methylation, increases expression | 2 |
| Dexamethasone | affects cotreatment, increases expression | 2 |
| Nickel | decreases expression | 2 |
| Aflatoxin B1 | decreases expression, increases methylation | 2 |
| bisphenol A | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| K 7174 | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| 1-Methyl-3-isobutylxanthine | increases expression, affects cotreatment | 1 |
| 8-Bromo Cyclic Adenosine Monophosphate | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: glucocorticoid deficiency 3, familial glucocorticoid deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial glucocorticoid deficiency, glucocorticoid deficiency 1, glucocorticoid deficiency 2