MSI2-AS1

Summary

MSI2-AS1 (MSI2 antisense RNA 1, HGNC:58556) is a long non-coding RNA gene on chromosome 17q22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58556
Approved symbol	MSI2-AS1
Name	MSI2 antisense RNA 1
Location	17q22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000263499
Ensembl biotype	lncRNA
Entrez	101927539

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000578662

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000578662 — 3 exons

Exon	Start	End
ENSE00002692449	57608260	57608412
ENSE00002711700	57600856	57602008
ENSE00002723972	57606253	57606358

Expression profiles

Bgee: expression breadth broad, 51 present calls, max score 90.97.

Top tissues by expression

162 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.97	gold quality
bone marrow cell	CL:0002092	72.10	gold quality
colonic epithelium	UBERON:0000397	65.43	silver quality
adrenal tissue	UBERON:0018303	61.30	gold quality
tendon of biceps brachii	UBERON:0008188	59.48	gold quality
ganglionic eminence	UBERON:0004023	58.34	silver quality
hindlimb stylopod muscle	UBERON:0004252	56.52	silver quality
endothelial cell	CL:0000115	55.25	gold quality
medial globus pallidus	UBERON:0002477	54.99	gold quality
stromal cell of endometrium	CL:0002255	54.49	silver quality
cartilage tissue	UBERON:0002418	53.57	gold quality
corpus callosum	UBERON:0002336	52.09	gold quality
globus pallidus	UBERON:0001875	51.79	gold quality
buccal mucosa cell	CL:0002336	50.35	gold quality
oocyte	CL:0000023	50.30	gold quality
calcaneal tendon	UBERON:0003701	49.26	silver quality
adrenal gland	UBERON:0002369	48.85	gold quality
upper leg skin	UBERON:0004262	48.79	silver quality
muscle of leg	UBERON:0001383	48.11	silver quality
uterine cervix	UBERON:0000002	47.67	silver quality
middle temporal gyrus	UBERON:0002771	47.64	gold quality
Brodmann (1909) area 46	UBERON:0006483	47.51	gold quality
islet of Langerhans	UBERON:0000006	47.16	gold quality
pancreas	UBERON:0001264	46.64	gold quality
gastrocnemius	UBERON:0001388	46.41	silver quality
amniotic fluid	UBERON:0000173	45.88	gold quality
body of pancreas	UBERON:0001150	45.80	silver quality
tonsil	UBERON:0002372	45.49	gold quality
skeletal muscle tissue	UBERON:0001134	45.46	gold quality
right lobe of thyroid gland	UBERON:0001119	45.19	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.