MSL3-DT

Summary

MSL3-DT (MSL3 divergent transcript, HGNC:56856) is a long non-coding RNA gene on chromosome Xp22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56856
Approved symbol	MSL3-DT
Name	MSL3 divergent transcript
Location	Xp22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000282840
Ensembl biotype	lncRNA
Entrez	124905247
RNAcentral	URS00009C6031 — lncRNA, 1893 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000634846

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000634846 — 4 exons

Exon	Start	End
ENSE00003784782	11668401	11669190
ENSE00003784828	11756752	11757718
ENSE00003788015	11755490	11755520
ENSE00003789710	11719622	11719726

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 75.98.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.98	silver quality
skeletal muscle tissue	UBERON:0001134	63.90	gold quality
smooth muscle tissue	UBERON:0001135	63.24	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	62.70	gold quality
body of uterus	UBERON:0009853	61.42	gold quality
myometrium	UBERON:0001296	60.15	gold quality
cortical plate	UBERON:0005343	59.84	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.61	gold quality
left uterine tube	UBERON:0001303	57.42	gold quality
fallopian tube	UBERON:0003889	56.99	gold quality
adult mammalian kidney	UBERON:0000082	56.48	gold quality
endometrium	UBERON:0001295	56.05	gold quality
kidney	UBERON:0002113	54.29	gold quality
muscle of leg	UBERON:0001383	54.00	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.93	gold quality
right lung	UBERON:0002167	53.28	gold quality
prefrontal cortex	UBERON:0000451	53.24	gold quality
urinary bladder	UBERON:0001255	53.12	gold quality
blood	UBERON:0000178	53.07	silver quality
lung	UBERON:0002048	52.73	gold quality
colon	UBERON:0001155	51.85	gold quality
gastrocnemius	UBERON:0001388	51.82	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	51.58	gold quality
upper lobe of left lung	UBERON:0008952	51.45	gold quality
ectocervix	UBERON:0012249	51.45	gold quality
liver	UBERON:0002107	51.30	silver quality
stromal cell of endometrium	CL:0002255	51.26	silver quality
lymph node	UBERON:0000029	51.03	gold quality
intestine	UBERON:0000160	50.93	gold quality
cortex of kidney	UBERON:0001225	50.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.