MSRA-DT

Summary

MSRA-DT (MSRA divergent transcript, HGNC:55400) is a long non-coding RNA gene on chromosome 8p23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55400
Approved symbol	MSRA-DT
Name	MSRA divergent transcript
Location	8p23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260093
Ensembl biotype	lncRNA
Entrez	105379234
RNAcentral	URS000046CC7F — lncRNA, 3770 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000562143, ENST00000659604, ENST00000843173, ENST00000843174, ENST00000843175, ENST00000844061, ENST00000844062, ENST00000844063

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562143 — 1 exons

Exon	Start	End
ENSE00002601608	10050485	10054254

Expression profiles

Bgee: expression breadth broad, 42 present calls, max score 78.24.

Top tissues by expression

155 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.24	gold quality
buccal mucosa cell	CL:0002336	69.21	gold quality
secondary oocyte	CL:0000655	64.49	gold quality
ganglionic eminence	UBERON:0004023	56.29	silver quality
epithelium of nasopharynx	UBERON:0001951	54.25	gold quality
monocyte	CL:0000576	49.76	silver quality
upper leg skin	UBERON:0004262	48.41	silver quality
islet of Langerhans	UBERON:0000006	47.81	silver quality
vermiform appendix	UBERON:0001154	47.07	silver quality
blood	UBERON:0000178	45.54	gold quality
right ovary	UBERON:0002118	45.50	silver quality
oocyte	CL:0000023	44.66	gold quality
adrenal tissue	UBERON:0018303	44.06	silver quality
right testis	UBERON:0004534	43.78	gold quality
testis	UBERON:0000473	43.77	gold quality
skin of hip	UBERON:0001554	43.75	silver quality
caecum	UBERON:0001153	43.59	silver quality
gastrocnemius	UBERON:0001388	43.54	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
left testis	UBERON:0004533	43.22	gold quality
adult mammalian kidney	UBERON:0000082	43.21	silver quality
right lobe of liver	UBERON:0001114	42.76	silver quality
adult organism	UBERON:0007023	42.52	gold quality
saliva-secreting gland	UBERON:0001044	41.93	silver quality
left ovary	UBERON:0002119	41.80	silver quality
right atrium auricular region	UBERON:0006631	41.78	silver quality
vastus lateralis	UBERON:0001379	41.73	gold quality
quadriceps femoris	UBERON:0001377	41.68	gold quality
bone marrow	UBERON:0002371	41.57	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.