MT-ND4L
geneOn this page
Also known as ND4LNAD4L
Summary
MT-ND4L (mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L, HGNC:7460) is a protein-coding gene on chromosome mitochondria, encoding NADH-ubiquinone oxidoreductase chain 4L (P03901). Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor.
Enables NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone and proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrial inner membrane. Part of respiratory chain complex I. Implicated in Leber hereditary optic neuropathy and diabetes mellitus.
Source: NCBI Gene 4539 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Leber hereditary optic neuropathy (Supportive, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 34 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 28
- Druggable target: yes
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7460 |
| Approved symbol | MT-ND4L |
| Name | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L |
| Location | mitochondria |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ND4L, NAD4L |
| Ensembl gene | ENSG00000212907 |
| Ensembl biotype | protein_coding |
| OMIM | 516004 |
| Entrez | 4539 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000361335
RefSeq mRNA: 0 — MANE Select: None
Canonical transcript exons
ENST00000361335 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001596097 | 10470 | 10766 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 99.99.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 713.5706 / max 153161.6599, expressed in 1822 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 194924 | 713.5706 | 1822 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| rectum | UBERON:0001052 | 99.99 | gold quality |
| cortex of kidney | UBERON:0001225 | 99.99 | gold quality |
| apex of heart | UBERON:0002098 | 99.99 | gold quality |
| primary visual cortex | UBERON:0002436 | 99.99 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 99.99 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.99 | gold quality |
| adipose tissue | UBERON:0001013 | 99.98 | gold quality |
| right lobe of liver | UBERON:0001114 | 99.98 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 99.98 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.98 | gold quality |
| transverse colon | UBERON:0001157 | 99.98 | gold quality |
| fundus of stomach | UBERON:0001160 | 99.98 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.98 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.98 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.98 | gold quality |
| endometrium | UBERON:0001295 | 99.98 | gold quality |
| right uterine tube | UBERON:0001302 | 99.98 | gold quality |
| left uterine tube | UBERON:0001303 | 99.98 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.98 | gold quality |
| temporal lobe | UBERON:0001871 | 99.98 | gold quality |
| caudate nucleus | UBERON:0001873 | 99.98 | gold quality |
| putamen | UBERON:0001874 | 99.98 | gold quality |
| amygdala | UBERON:0001876 | 99.98 | gold quality |
| nucleus accumbens | UBERON:0001882 | 99.98 | gold quality |
| hypothalamus | UBERON:0001898 | 99.98 | gold quality |
| Ammon’s horn | UBERON:0001954 | 99.98 | gold quality |
| cerebellum | UBERON:0002037 | 99.98 | gold quality |
| substantia nigra | UBERON:0002038 | 99.98 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.98 | gold quality |
| cerebellar cortex | UBERON:0002129 | 99.98 | gold quality |
Single-cell (SCXA)
Detected in 30 experiment(s), a significant marker in 16.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 27654.73 |
| E-CURD-77 | yes | 18758.26 |
| E-CURD-84 | yes | 16670.44 |
| E-CURD-88 | yes | 14982.94 |
| E-CURD-120 | yes | 9881.27 |
| E-MTAB-5061 | yes | 6043.10 |
| E-MTAB-6678 | yes | 5429.11 |
| E-MTAB-7316 | yes | 1713.26 |
| E-GEOD-86618 | yes | 1712.63 |
| E-MTAB-8205 | yes | 1706.55 |
| E-CURD-112 | yes | 26.99 |
| E-GEOD-125970 | yes | 26.92 |
| E-HCAD-31 | yes | 24.07 |
| E-GEOD-137537 | yes | 18.43 |
| E-GEOD-130148 | yes | 9.23 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 1)
- Point mutation of PCLN-1 is associated with familial hypomagnesemia with hypercalciuria (PMID:17123117)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | mt-Nd4l | ENSMUSG00000065947 |
| rattus_norvegicus | Mt-nd4l | ENSRNOG00000031053 |
Protein
Protein identifiers
NADH-ubiquinone oxidoreductase chain 4L — P03901 (reviewed: P03901)
Alternative names: NADH dehydrogenase subunit 4L
All UniProt accessions (2): P03901, Q7GXZ4
UniProt curated annotations — full annotation on UniProt →
Function. Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor. Part of the enzyme membrane arm which is embedded in the lipid bilayer and involved in proton translocation.
Subunit / interactions. Core subunit of respiratory chain NADH dehydrogenase (Complex I) which is composed of 45 different subunits.
Subcellular location. Mitochondrion inner membrane.
Disease relevance. Leber hereditary optic neuropathy (LHON) [MIM:535000] A maternally inherited form of Leber hereditary optic neuropathy, a mitochondrial disease resulting in bilateral painless loss of central vision due to selective degeneration of the retinal ganglion cells and their axons. The disorder shows incomplete penetrance and male predominance. Cardiac conduction defects and neurological defects have also been described in some LHON patients. LHON results from primary mitochondrial DNA mutations affecting the respiratory chain complexes. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the complex I subunit 4L family.
RefSeq proteins (0): (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001133 | NADH_UbQ_OxRdtase_chain4L/K | Family |
| IPR039428 | NUOK/Mnh_C1-like | Family |
Pfam: PF00420
Catalyzed reactions (Rhea), 1 shown:
- a ubiquinone + NADH + 5 H(+)(in) = a ubiquinol + NAD(+) + 4 H(+)(out) (RHEA:29091)
UniProt features (9 total): sequence variant 5, transmembrane region 3, chain 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9I4I | ELECTRON MICROSCOPY | 2.63 |
| 9TI4 | ELECTRON MICROSCOPY | 2.66 |
| 9CWT | ELECTRON MICROSCOPY | 3.44 |
| 5XTC | ELECTRON MICROSCOPY | 3.7 |
| 5XTD | ELECTRON MICROSCOPY | 3.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P03901-F1 | 88.22 | 0.55 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5419276 | Mitochondrial translation termination |
MSigDB gene sets: 161 (showing top):
GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_ATP_BIOSYNTHETIC_PROCESS, GOBP_OXIDATIVE_PHOSPHORYLATION, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOSIDE_TRIPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_TRIPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ELECTRON_TRANSPORT_CHAIN, GOCC_MITOCHONDRIAL_ENVELOPE, GOMF_PROTON_TRANSMEMBRANE_TRANSPORTER_ACTIVITY
GO Biological Process (5): mitochondrial electron transport, NADH to ubiquinone (GO:0006120), aerobic respiration (GO:0009060), proton motive force-driven mitochondrial ATP synthesis (GO:0042776), ATP synthesis coupled electron transport (GO:0042773), proton transmembrane transport (GO:1902600)
GO Molecular Function (3): NADH dehydrogenase (ubiquinone) activity (GO:0008137), oxidoreductase activity, acting on NAD(P)H (GO:0016651), oxidoreductase activity (GO:0016491)
GO Cellular Component (4): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), respiratory chain complex I (GO:0045271), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Mitochondrial translation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| oxidative phosphorylation | 2 |
| aerobic electron transport chain | 1 |
| mitochondrial ATP synthesis coupled electron transport | 1 |
| cellular respiration | 1 |
| mitochondrion | 1 |
| proton motive force-driven ATP synthesis | 1 |
| respiratory electron transport chain | 1 |
| monoatomic cation transmembrane transport | 1 |
| NADH dehydrogenase activity | 1 |
| electron transfer activity | 1 |
| proton transmembrane transporter activity | 1 |
| oxidoreduction-driven active transmembrane transporter activity | 1 |
| oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1 |
| active monoatomic ion transmembrane transporter activity | 1 |
| oxidoreductase activity | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| NADH dehydrogenase complex | 1 |
| respiratory chain complex | 1 |
| transmembrane transporter complex | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1321 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MT-ND4L | MT-ND6 | P03923 | 999 |
| MT-ND4L | MT-ND1 | P03886 | 999 |
| MT-ND4L | MT-ND2 | P03891 | 999 |
| MT-ND4L | MT-ND3 | P03897 | 999 |
| MT-ND4L | MT-ND4 | P03905 | 999 |
| MT-ND4L | MT-ND5 | P03915 | 999 |
| MT-ND4L | MT-ATP6 | P00846 | 974 |
| MT-ND4L | MT-ATP8 | P03928 | 974 |
| MT-ND4L | MT-CYB | P00156 | 971 |
| MT-ND4L | MT-CO3 | P00414 | 953 |
| MT-ND4L | MT-CO1 | P00395 | 919 |
| MT-ND4L | MT-CO2 | P00403 | 915 |
| MT-ND4L | PTGS1 | P23219 | 885 |
| MT-ND4L | NDUFB6 | O95139 | 788 |
| MT-ND4L | NDUFS7 | O75251 | 744 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| rep | MT-ND4L | psi-mi:“MI:0915”(physical association) | 0.370 |
| STAT1 | MT-ND4L | psi-mi:“MI:0915”(physical association) | 0.370 |
| ABHD16A | MT-ND4L | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (5): ND4L (PCA), ND4L (Affinity Capture-RNA), ND4L (Two-hybrid), ND4L (Affinity Capture-RNA), STAT1 (Two-hybrid)
ESM2 similar proteins: O03203, O21787, O78754, O79435, P03901, P24976, P48931, P56632, P61795, P61796, Q072K5, Q09EG3, Q15GS3, Q2V091, Q2V0A4, Q34572, Q35588, Q37809, Q3L6V0, Q3L6Z6, Q3L708, Q3LR84, Q598U3, Q5BU90, Q5I195, Q69B76, Q69B78, Q69B80, Q69B84, Q6EMS3, Q70RM6, Q70RN9, Q70S06, Q70S19, Q71RU5, Q7HLD2, Q7IVV2, Q7IVV3, Q7Y8E7, Q7YBC1
Diamond homologs: O03172, O03203, O21405, O21787, O79409, O99602, P03901, P18942, P23633, P24976, P34193, P48658, P67783, P67784, P69302, P69303, P69304, P69305, P69306, P69307, P92483, Q08GU6, Q08HF4, Q08HK6, Q15GM1, Q15GP7, Q15GR0, Q1AL67, Q1HUW0, Q1HUX2, Q1HUX8, Q1HUY4, Q1HUZ6, Q1HUZ9, Q1HV02, Q1HV05, Q1HV14, Q1HV23, Q1HV29, Q1HV35
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| “Non-structural protein 10” | “down-regulates activity” | MT-ND4L | binding |
| MT-ND4L | “form complex” | “NADH-ubiquinone oxidoreductase-Mitochondrial respiratory chain complex I” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
34 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 14 |
| Likely benign | 9 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 430682 | NC_012920.1(MT-TS2):m.8815_13722del | Pathogenic |
| 9707 | NC_012920.1(MT-ND4L):m.10663T>C | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
618 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| M:10572:G:C | G35R | 0.977 |
| M:10689:G:C | G74R | 0.976 |
| M:10684:C:A | A72E | 0.962 |
| M:10590:T:C | F41L | 0.961 |
| M:10592:C:A | F41L | 0.961 |
| M:10592:C:G | F41L | 0.961 |
| M:10521:G:C | G18R | 0.958 |
| M:10563:T:C | C32R | 0.957 |
| M:10690:G:A | G74D | 0.954 |
| M:10570:A:T | E34V | 0.951 |
| M:10693:T:C | L75P | 0.944 |
| M:10683:G:C | A72P | 0.941 |
| M:10674:T:C | C69R | 0.939 |
| M:10573:G:A | G35E | 0.938 |
| M:10672:C:A | A68D | 0.938 |
| M:10513:C:G | S15W | 0.934 |
| M:10558:T:A | L30Q | 0.932 |
| M:10669:C:A | A67D | 0.932 |
| M:10693:T:A | L75Q | 0.931 |
| M:10572:G:T | G35W | 0.928 |
| M:10565:C:A | C32W | 0.926 |
| M:10565:C:G | C32W | 0.926 |
| M:10648:C:G | P60R | 0.925 |
| M:10761:T:C | C98R | 0.924 |
| M:10699:T:C | L77P | 0.923 |
| M:10571:A:C | E34D | 0.921 |
| M:10571:A:T | E34D | 0.921 |
| M:10503:T:C | F12L | 0.919 |
| M:10505:T:A | F12L | 0.919 |
| M:10505:T:G | F12L | 0.919 |
dbSNP variants (sampled 300 via entrez): RS1057516063 (MT:9166 T>C), RS1057516064 (MT:9237 G>A), RS1057520074 (MT:10499 A>G), RS1057520079 (MT:9091 A>G), RS1057520102 (MT:8816 A>G), RS1057520204 (MT:8943 C>T), RS1064597 (MT:8647 C>G), RS112133961 (MT:10127 A>G), RS121434456 (MT:10438 A>G), RS121434475 (MT:9997 T>A,C), RS121434476 (MT:10010 T>C), RS1553140066 (MT:9247 G>A,C), RS1556423467 (MT:8470 A>G,T), RS1556423473 (MT:8488 C>G,T), RS1556423474 (MT:8497 A>G)
Disease associations
OMIM: gene MIM:516004 | disease phenotypes: MIM:256000, MIM:535000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Leber hereditary optic neuropathy | Supportive | Mitochondrial |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial disease | Limited | MT |
Mondo (4): mitochondrial disease (MONDO:0044970), Leigh syndrome (MONDO:0009723), familial colorectal cancer (MONDO:0023113), Leber hereditary optic neuropathy (MONDO:0010788)
Orphanet (3): Mitochondrial disease (Orphanet:68380), Leigh syndrome (Orphanet:506), Leber hereditary optic neuropathy (Orphanet:104)
HPO phenotypes
28 total (28 of 28 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000512 | Abnormal electroretinogram |
| HP:0000529 | Progressive visual loss |
| HP:0000551 | Color vision defect |
| HP:0000572 | Visual loss |
| HP:0000576 | Centrocecal scotoma |
| HP:0000603 | Central scotoma |
| HP:0000622 | Blurred vision |
| HP:0000648 | Optic atrophy |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0001112 | Leber optic atrophy |
| HP:0001138 | Optic neuropathy |
| HP:0001251 | Ataxia |
| HP:0001271 | Polyneuropathy |
| HP:0001332 | Dystonia |
| HP:0001427 | Mitochondrial inheritance |
| HP:0002174 | Postural tremor |
| HP:0003198 | Myopathy |
| HP:0003829 | Typified by incomplete penetrance |
| HP:0004309 | Ventricular preexcitation |
| HP:0007763 | Retinal telangiectasia |
| HP:0007768 | Central retinal vessel vascular tortuosity |
| HP:0007924 | Slow decrease in visual acuity |
| HP:0009830 | Peripheral neuropathy |
| HP:0011675 | Arrhythmia |
| HP:0012841 | Retinal vascular tortuosity |
| HP:0020120 | Retinal nerve fiber edema |
| HP:0032036 | Reduced contrast sensitivity |
| HP:0200125 | Mitochondrial respiratory chain defects |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007888 | Leigh Disease | C10.228.140.163.100.412; C16.320.565.189.412; C16.320.565.202.810.444; C18.452.132.100.412; C18.452.648.189.412; C18.452.648.202.810.444; C18.452.660.520 |
| D029242 | Optic Atrophy, Hereditary, Leber | C10.292.700.225.500.400; C10.574.500.662.400; C11.270.564.400; C11.640.451.451.400; C16.320.290.564.400; C16.320.400.630.400; C18.452.660.670 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2363065 (PROTEIN COMPLEX)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2853826 | MT-CO3, MT-ND3, MT-ND4, MT-ND4L, MT-ND5 | 3 | 2.00 | 1 | efavirenz;lopinavir;Nucleoside and nucleotide reverse transcriptase inhibitors;ritonavir |
ChEMBL bioactivities
8 potent at pChembl≥5 of 18 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.06 | IC50 | 870 | nM | R-(+)-MARMIN-6’-UNDECANOATE |
| 6.04 | IC50 | 920 | nM | R-(+)-MARMIN-6’-LINOLEATE |
| 5.63 | IC50 | 2350 | nM | R-(+)-MARMIN-6’-LINOLEATE |
| 5.51 | IC50 | 3080 | nM | R-(+)-MARMIN-6’-OCTANOATE |
| 5.43 | IC50 | 3670 | nM | R-(+)-MARMIN-6’-UNDECANOATE |
| 5.43 | IC50 | 3710 | nM | R-(+)-MARMIN-6’-OCTANOATE |
| 5.31 | IC50 | 4900 | nM | (+)-9’-ISOVALEROXYLARICIRESINOL |
| 5.04 | IC50 | 9100 | nM | (+)-9’-ISOVALEROXYLARICIRESINOL |
PubChem BioAssay actives
8 with measured affinity, of 28 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] undecanoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 0.8700 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] (9Z,12Z)-octadeca-9,12-dienoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 0.9200 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] octanoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 3.0800 | uM |
| [(2S,3R,4R)-2-(4-hydroxy-3-methoxyphenyl)-4-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-3-yl]methyl 3-methylbutanoate | 739269: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1,10-phenanthroline-induced HIF1 activation incubated for 30 mins prior to 1,10-phenanthroline-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 4.9000 | uM |
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| beauvericin | affects cotreatment, increases expression, decreases expression | 3 |
| enniatins | affects cotreatment, increases expression, decreases expression | 3 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Atrazine | decreases expression | 2 |
| Plant Extracts | affects cotreatment, increases expression | 2 |
| 1-Methyl-4-phenylpyridinium | decreases expression, decreases reaction | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| bisphenol A | decreases expression | 1 |
| ochratoxin A | affects cotreatment, increases expression | 1 |
| aflatoxin G1 | affects cotreatment, increases expression | 1 |
| aflatoxin B2 | increases expression, affects cotreatment | 1 |
| aflatoxin G2 | affects cotreatment, increases expression | 1 |
| 1-methyl-4-phenyl-2,3-dihydropyridinium | decreases expression | 1 |
| arsenic trichloride | increases abundance, increases expression | 1 |
| licochalcone B | decreases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Lipopolysaccharides | affects expression, affects response to substance | 1 |
| Smoke | decreases expression, increases abundance | 1 |
| Dronabinol | increases expression | 1 |
| Tunicamycin | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Zearalenone | affects cotreatment, increases expression | 1 |
| Aflatoxin B1 | affects cotreatment, increases expression | 1 |
| Cadmium Chloride | increases abundance, increases expression | 1 |
| Thapsigargin | decreases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2353025 | Binding | Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation at 30 uM incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | Semisynthetic studies identify mitochondria poisons from botanical dietary supplements–geranyloxycoumarins from Aegle marmelos. — Bioorg Med Chem |
Cellosaurus cell lines
2 cell lines: 2 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D6I4 | FINCBi005-A | Induced pluripotent stem cell | Male |
| CVCL_D6I5 | FINCBi006-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
135 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03351998 | PHASE4 | COMPLETED | Impact of Statin Therapy on Muscle Mitochondrial Function and Aerobic Capacity |
| NCT03293524 | PHASE3 | COMPLETED | Efficacy & Safety Study of Bilateral IVT Injection of GS010 in LHON Subjects Due to the ND4 Mutation for up to 1 Year |
| NCT03406104 | PHASE3 | COMPLETED | RESCUE and REVERSE Long-term Follow-up |
| NCT07406854 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3, Multicenter, Randomized, Double-Masked, Sham-Controlled Clinical Trial for Leber’s Hereditary Optic Neuropathy (LHON) Associated With ND4 Mutation |
| NCT00432744 | PHASE3 | COMPLETED | Phase III Trial of Coenzyme Q10 in Mitochondrial Disease |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT06451757 | PHASE3 | RECRUITING | KHENERFIN Study: A Trial to Evaluate the Efficacy and Safety of Sonlicromanol in Primary Mitochondrial Diseases |
| NCT02176733 | PHASE2 | UNKNOWN | Trial of Cyclosporine in the Acute Phase of Leber Hereditary Optic Neuropathy |
| NCT02398201 | PHASE2 | COMPLETED | A Study of Bezafibrate in Mitochondrial Myopathy |
| NCT02473445 | PHASE2 | TERMINATED | A Long-term Extension of Study RP103-MITO-001 (NCT02023866) to Assess Cysteamine Bitartrate Delayed-release Capsules (RP103) in Children With Inherited Mitochondrial Disease |
| NCT02500628 | PHASE2 | COMPLETED | Heart Rate Variability in Response to Metformin Challenge |
| NCT02805790 | PHASE2 | COMPLETED | Safety, Tolerability, Efficacy of MTP-131 for Treatment of Mitochondrial Disease in Subjects From the MMPOWER Study |
| NCT02909400 | PHASE2 | COMPLETED | The KHENERGY Study |
| NCT02976038 | PHASE2 | TERMINATED | Open-Label Extension Trial to Characterize the Long-term Safety and Tolerability of Elamipretide in Subjects With Genetically Confirmed Primary Mitochondrial Myopathy (PMM) |
| NCT03177798 | PHASE2 | COMPLETED | Mitochondria and Chronic Kidney Disease |
| NCT03866954 | PHASE2 | WITHDRAWN | Trial of Erythrocyte Encapsulated Thymidine Phosphorylase In Mitochondrial Neurogastrointestinal Encephalomyopathy |
| NCT04165239 | PHASE2 | COMPLETED | The KHENERGYZE Study |
| NCT04604548 | PHASE2 | COMPLETED | The KHENEREXT Study |
| NCT04802707 | PHASE2 | RECRUITING | Deoxynucleosides Pyrimidines as Treatment for Mitochondrial Depletion Syndrome |
| NCT04846036 | PHASE2 | SUSPENDED | The KHENERGYC Study |
| NCT05650229 | PHASE2 | RECRUITING | Efficacy of KL1333 in Adult Patients With Primary Mitochondrial Disease |
| NCT05972954 | PHASE2 | COMPLETED | OMT-28 in Patients With Primary Mitochondrial Disease (PMD) (PMD-OPTION) |
| NCT06017869 | PHASE2 | RECRUITING | Evaluate the Safety and Therapeutic Effects of a Single Intravenous Infusion (IV) of Autologous CD34+ Cells Enriched With Allogenic Placenta-derived Mitochondria in Patients With a Diagnosis of Pearson Syndrome (PS) |
| NCT07514338 | PHASE2 | NOT_YET_RECRUITING | Open Label Extension to Assess Long Term Safety and Efficacy of KL1333 in Patients With Primary Mitochondrial Disease |
| NCT01721733 | PHASE2 | COMPLETED | Safety and Efficacy Study of EPI-743 in Children With Leigh Syndrome |
| NCT02352896 | PHASE2 | COMPLETED | Long-Term Safety and Efficacy Evaluation of EPI-743 in Children With Leigh Syndrome |
| NCT03747328 | PHASE2 | WITHDRAWN | ABI-009 (Nab-sirolimus) in Patients With Genetically-confirmed Leigh or Leigh-like Syndrome |
| NCT06843811 | PHASE2 | ENROLLING_BY_INVITATION | Sirolimus for Leigh Syndrome |
| NCT06990984 | PHASE2 | NOT_YET_RECRUITING | A Dose-ranging Study of TTI-0102 in Adults and Children With Leigh Syndrome Spectrum (LSS) |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT07258667 | PHASE1 | NOT_YET_RECRUITING | Pilot Study of the Efficacy of Nicotinamide (Vitamin B3) in Leber’s Hereditary Optic Neuropathy |
| NCT00060515 | PHASE1 | TERMINATED | RG2133 (2’,3’,5’-Tri-O-Acetyluridine) in Mitochondrial Disease |
| NCT02348125 | PHASE1 | UNKNOWN | Does Clinical Treatment of Mitochondrial Dysfunction Impact Autism Spectrum Disorder (ASD)? |
| NCT03888716 | PHASE1 | COMPLETED | A Phase Ia/Ib, SAD and MAD Study of of KL1333 in Healthy Subjects and Patients With Primary Mitochondrial Disease |
| NCT04086329 | PHASE1 | RECRUITING | Validation of Oxygen Nanosensor in Mitochondrial Myopathy |
| NCT04643249 | PHASE1 | COMPLETED | Drug-drug Interaction Study of KL1333 in Healthy Subjects |
| NCT05241262 | PHASE1 | RECRUITING | Study of N-acetylcysteine in the Treatment of Patients With the m.3243A>G Mutation and Low Brain Glutathione Levels |
| NCT05569122 | PHASE1 | RECRUITING | Applying pGz in Mitochondrial Disease |
| NCT06819683 | PHASE1 | RECRUITING | Validation of Nanosensor Oxygen Measurement |
| NCT03153293 | PHASE2/PHASE3 | UNKNOWN | A Single Intravitreal Injection of rAAV2-ND4 for the Treatment of Leber’s Hereditary Optic Neuropathy |
Related Atlas pages
- Associated diseases: Leber hereditary optic neuropathy, mitochondrial disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial colorectal cancer, Leber hereditary optic neuropathy, Leigh syndrome