MTERF1
gene geneOn this page
Summary
MTERF1 (mitochondrial transcription termination factor 1, HGNC:21463) is a protein-coding gene on chromosome 7q21.2, encoding Transcription termination factor 1, mitochondrial (Q99551). Transcription termination factor.
This gene encodes a mitochondrial transcription termination factor. This protein participates in attenuating transcription from the mitochondrial genome; this attenuation allows higher levels of expression of 16S ribosomal RNA relative to the tRNA gene downstream. The product of this gene has three leucine zipper motifs bracketed by two basic domains that are all required for DNA binding. There is evidence that, for this protein, the zippers participate in intramolecular interactions that establish the three-dimensional structure required for DNA binding.
Source: NCBI Gene 7978 — RefSeq curated summary.
At a glance
- GWAS associations: 8
- Clinical variants (ClinVar): 68 total
- MANE Select transcript:
NM_006980
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21463 |
| Approved symbol | MTERF1 |
| Name | mitochondrial transcription termination factor 1 |
| Location | 7q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000127989 |
| Ensembl biotype | protein_coding |
| OMIM | 602318 |
| Entrez | 7978 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 10 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000351870, ENST00000406735, ENST00000419292, ENST00000425936, ENST00000442961, ENST00000454222, ENST00000456229, ENST00000481516, ENST00000867199, ENST00000867200, ENST00000939549, ENST00000939550
RefSeq mRNA: 3 — MANE Select: NM_006980
NM_001301134, NM_001301135, NM_006980
CCDS: CCDS5621, CCDS75629
Canonical transcript exons
ENST00000351870 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001031403 | 91880657 | 91880702 |
| ENSE00001132795 | 91870929 | 91874764 |
| ENSE00003666957 | 91880055 | 91880113 |
Expression profiles
Bgee: expression breadth ubiquitous, 139 present calls, max score 86.13.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.7801 / max 258.3651, expressed in 1727 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 84770 | 9.6914 | 1726 |
| 84769 | 0.0887 | 14 |
Top tissues by expression
152 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 86.13 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.10 | gold quality |
| calcaneal tendon | UBERON:0003701 | 84.91 | gold quality |
| lymph node | UBERON:0000029 | 84.06 | gold quality |
| endometrium | UBERON:0001295 | 83.24 | gold quality |
| islet of Langerhans | UBERON:0000006 | 82.90 | gold quality |
| cortical plate | UBERON:0005343 | 82.47 | gold quality |
| adrenal tissue | UBERON:0018303 | 81.56 | gold quality |
| leukocyte | CL:0000738 | 81.53 | gold quality |
| monocyte | CL:0000576 | 81.47 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 81.45 | gold quality |
| ventricular zone | UBERON:0003053 | 81.33 | gold quality |
| ganglionic eminence | UBERON:0004023 | 80.37 | gold quality |
| rectum | UBERON:0001052 | 80.30 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 79.91 | gold quality |
| vermiform appendix | UBERON:0001154 | 79.86 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 79.86 | gold quality |
| stromal cell of endometrium | CL:0002255 | 79.68 | gold quality |
| tonsil | UBERON:0002372 | 79.45 | gold quality |
| duodenum | UBERON:0002114 | 78.78 | gold quality |
| pancreas | UBERON:0001264 | 78.75 | gold quality |
| uterus | UBERON:0000995 | 78.34 | gold quality |
| heart left ventricle | UBERON:0002084 | 78.33 | gold quality |
| right adrenal gland | UBERON:0001233 | 78.15 | gold quality |
| spleen | UBERON:0002106 | 77.98 | gold quality |
| granulocyte | CL:0000094 | 77.96 | gold quality |
| apex of heart | UBERON:0002098 | 77.89 | gold quality |
| placenta | UBERON:0001987 | 77.76 | gold quality |
| heart | UBERON:0000948 | 77.73 | gold quality |
| adrenal gland | UBERON:0002369 | 77.61 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.78 |
| E-GEOD-99795 | no | 87.94 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC
miRNA regulators (miRDB)
35 targeting MTERF1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-8087 | 99.90 | 69.55 | 1351 |
| HSA-MIR-4760-5P | 99.80 | 69.88 | 1619 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
| HSA-MIR-378G | 99.71 | 64.90 | 1106 |
| HSA-MIR-4470 | 99.66 | 69.35 | 1767 |
| HSA-MIR-8061 | 99.63 | 69.44 | 1411 |
| HSA-MIR-106A-3P | 99.53 | 67.58 | 995 |
| HSA-MIR-877-3P | 99.09 | 68.10 | 1637 |
| HSA-MIR-4324 | 99.04 | 70.14 | 1569 |
| HSA-MIR-511-5P | 98.97 | 70.94 | 2268 |
| HSA-MIR-6074 | 98.89 | 69.64 | 2187 |
| HSA-MIR-491-3P | 98.88 | 68.86 | 1224 |
| HSA-MIR-3922-5P | 98.77 | 66.53 | 1059 |
| HSA-MIR-502-5P | 98.77 | 66.51 | 906 |
| HSA-MIR-4700-5P | 98.63 | 67.43 | 1915 |
| HSA-MIR-6830-3P | 98.62 | 68.07 | 1760 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-676-5P | 98.49 | 68.87 | 1492 |
| HSA-MIR-6831-5P | 98.26 | 67.20 | 990 |
| HSA-MIR-8089 | 97.74 | 66.21 | 1698 |
| HSA-MIR-3927-3P | 97.68 | 66.76 | 892 |
| HSA-MIR-4667-5P | 97.61 | 66.67 | 1683 |
| HSA-MIR-134-3P | 96.83 | 66.22 | 1001 |
| HSA-MIR-212-5P | 96.83 | 67.43 | 950 |
Literature-anchored findings (GeneRIF, showing 14)
- mTERF exists in mitochondria in two forms, an active monomer and an inactive large size complex (PMID:14744862)
- monomeric human mTERF is fully active in its non-phosphorylated form and that the protein does not require additional cellular factors to terminate mitochondrial transcription in vitro (PMID:15899902)
- analysis of DNA light-strand preferential recognition of human mitochondria transcription termination factor mTERF (PMID:16336784)
- Results indicate a role for mTERF in mtDNA replication, in addition to its role in transcription. (PMID:17884915)
- mTERF mRNA levels were higher in elite athletes compared with moderately active subjects (PMID:19681768)
- Presented are the crystal structures of human mitochondrial regulator MTERF, a transcription termination factor also implicated in replication pausing, in complex with double-stranded DNA oligonucleotides containing the tRNA(Leu)(UUR) gene sequence. (PMID:20543826)
- The structure indicates that upon sequence recognition MTERF1 unwinds the DNA molecule, promoting eversion of three nucleotides. (PMID:20550934)
- Data show that mTERF protein levels materially affect the amount of readthrough transcription on the antisense strand of mtDNA, whilst the effects on sense-strand transcripts are complex, and suggest the influence of compensatory mechanisms. (PMID:20846394)
- Studies indicate that the structure of the mitochondrial transcription termination factor (MTERF1) provides insight into the mechanism of binding, recognition of the termination sequence and the conformational changes involved in mediating termination. (PMID:21326908)
- Single nucleotide polymorphism in MTERF gene is associated with epithelial ovarian cancer. (PMID:21447778)
- data suggested that hMTERF4 is an essential factor for cell proliferation, which is probably modulated by mitochondrial transcription to promote cell proliferation (PMID:21450691)
- MTERF1 has the ability to accommodate alternate active conformations. (PMID:26523681)
- It has been demonstrated that MTERF1 arrests mitochondrial DNA (mtDNA) replication with distinct polarity whereby MTERF1 acts as a directional contra-helicase, blocking mtDNA unwinding by the mitochondrial helicase TWINKLE. (PMID:27112570)
- FAK mediates hypoxia-induced pulmonary artery smooth muscle cell proliferation by modulating mitochondrial transcription termination factor 1/cyclin D1. (PMID:38488492)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ENSDARG00000086107 | |
| mus_musculus | Mterf1a | ENSMUSG00000040429 |
| mus_musculus | Mterf1b | ENSMUSG00000053178 |
| rattus_norvegicus | Mterf1 | ENSRNOG00000007899 |
| drosophila_melanogaster | mTTF | FBGN0028530 |
Paralogs (1): MTERF2 (ENSG00000120832)
Protein
Protein identifiers
Transcription termination factor 1, mitochondrial — Q99551 (reviewed: Q99551)
Alternative names: Mitochondrial transcription termination factor 1
All UniProt accessions (5): Q99551, B4DPR9, C9JE25, C9JNM8, C9JU79
UniProt curated annotations — full annotation on UniProt →
Function. Transcription termination factor. Binds to a 28 bp region within the tRNA(Leu(uur)) gene at a position immediately adjacent to and downstream of the 16S rRNA gene; this region comprises a tridecamer sequence critical for directing accurate termination. Binds DNA along the major grove and promotes DNA bending and partial unwinding. Promotes base flipping. Transcription termination activity appears to be polarized with highest specificity for transcripts initiated on the light strand.
Subunit / interactions. Monomer.
Subcellular location. Mitochondrion.
Post-translational modifications. Phosphoprotein with mostly four phosphate groups. While the DNA-binding activity is unaffected by the phosphorylation state, only the phosphorylated form of the protein is active for termination activity. Functioning seems to be regulated by phosphorylation.
Domain organisation. Contains nine structural repeats of about 35 residues, where each repeat contains three helices. The repeats form a left-handed superhelical assembly with a solenoid structure that wraps itself around DNA.
Similarity. Belongs to the mTERF family.
RefSeq proteins (3): NP_001288063, NP_001288064, NP_008911* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003690 | MTERF | Family |
| IPR038538 | MTERF_sf | Homologous_superfamily |
Pfam: PF02536
UniProt features (55 total): helix 27, mutagenesis site 8, site 5, region of interest 5, turn 5, sequence variant 2, transit peptide 1, chain 1, strand 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3MVA | X-RAY DIFFRACTION | 2.2 |
| 3N7Q | X-RAY DIFFRACTION | 2.4 |
| 5CRK | X-RAY DIFFRACTION | 2.48 |
| 5CRJ | X-RAY DIFFRACTION | 2.59 |
| 5CKY | X-RAY DIFFRACTION | 2.62 |
| 5CO0 | X-RAY DIFFRACTION | 2.65 |
| 3MVB | X-RAY DIFFRACTION | 2.79 |
| 3N6S | X-RAY DIFFRACTION | 3.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q99551-F1 | 84.99 | 0.80 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (5): 288 (interaction with dna); 350 (interaction with dna); 162 (interaction with dna); 202 (interaction with dna); 243 (interaction with dna)
Mutagenesis-validated functional residues (8):
| Position | Phenotype |
|---|---|
| 162 | reduces affinity for cognate dna; when associated with a-243 and a-288. |
| 169 | strongly reduces affinity for dna. strongly reduces transcription termination. |
| 202 | strongly reduces affinity for dna. strongly reduces transcription termination. |
| 243 | reduces affinity for cognate dna; when associated with a-162 and a-288. |
| 251 | strongly reduces transcription termination. |
| 288 | reduces affinity for cognate dna; when associated with a-162 and a-243. |
| 350 | reduces transcription termination. |
| 387 | strongly reduces affinity for cognate dna. strongly reduces transcription termination. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-163316 | Mitochondrial transcription termination |
| R-HSA-2151201 | Transcriptional activation of mitochondrial biogenesis |
| R-HSA-1592230 | Mitochondrial biogenesis |
| R-HSA-1852241 | Organelle biogenesis and maintenance |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-75944 | Transcription from mitochondrial promoters |
MSigDB gene sets: 95 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, GOBP_DNA_TEMPLATED_TRANSCRIPTION_TERMINATION, PUJANA_CHEK2_PCC_NETWORK, GOBP_DNA_CONFORMATION_CHANGE, GOBP_MITOCHONDRIAL_RNA_METABOLIC_PROCESS, ELK1_01, DANG_BOUND_BY_MYC, NOUZOVA_METHYLATED_IN_APL, GOCC_NUCLEOID, GOCC_MITOCHONDRIAL_MATRIX, SCGGAAGY_ELK1_02, FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP, GOBP_MITOCHONDRIAL_TRANSCRIPTION, GOBP_MITOCHONDRIAL_GENE_EXPRESSION, REACTOME_MITOCHONDRIAL_BIOGENESIS
GO Biological Process (4): DNA-templated transcription termination (GO:0006353), termination of mitochondrial transcription (GO:0006393), DNA geometric change (GO:0032392), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (5): nucleic acid binding (GO:0003676), double-stranded DNA binding (GO:0003690), RNA binding (GO:0003723), DNA binding (GO:0003677), protein binding (GO:0005515)
GO Cellular Component (3): mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), mitochondrial nucleoid (GO:0042645)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Transcription from mitochondrial promoters | 1 |
| Mitochondrial biogenesis | 1 |
| Organelle biogenesis and maintenance | 1 |
| Gene expression (Transcription) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| mitochondrion | 3 |
| DNA-templated transcription | 2 |
| binding | 2 |
| nucleic acid binding | 2 |
| RNA biosynthetic process | 1 |
| mitochondrial RNA metabolic process | 1 |
| DNA-templated transcription termination | 1 |
| mitochondrial transcription | 1 |
| DNA conformation change | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| DNA binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular organelle lumen | 1 |
| mitochondrial matrix | 1 |
| nucleoid | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
1222 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MTERF1 | TFB2M | Q9H5Q4 | 858 |
| MTERF1 | MTERF3 | Q96E29 | 840 |
| MTERF1 | POLRMT | O00411 | 830 |
| MTERF1 | TFB1M | Q8WVM0 | 818 |
| MTERF1 | MTERF4 | Q7Z6M4 | 771 |
| MTERF1 | TEFM | Q96QE5 | 734 |
| MTERF1 | SP2 | Q02086 | 657 |
| MTERF1 | NSUN4 | Q96CB9 | 636 |
| MTERF1 | TFAM | Q00059 | 635 |
| MTERF1 | TWNK | Q96RR1 | 605 |
| MTERF1 | POLG2 | Q9UHN1 | 529 |
| MTERF1 | SSBP1 | Q04837 | 517 |
| MTERF1 | MRPL12 | P52815 | 512 |
| MTERF1 | MT-ND6 | P03923 | 494 |
| MTERF1 | MT-ND1 | P03886 | 493 |
IntAct
24 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAX | MYC | psi-mi:“MI:0914”(association) | 0.980 |
| MTERF1 | PNPO | psi-mi:“MI:0915”(physical association) | 0.590 |
| TMEM128 | MTERF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| GABARAP | psi-mi:“MI:0914”(association) | 0.350 | |
| ZNF467 | ZNF320 | psi-mi:“MI:0914”(association) | 0.350 |
| EIF1AD | CHEK1 | psi-mi:“MI:0914”(association) | 0.350 |
| MRPL58 | psi-mi:“MI:0914”(association) | 0.350 | |
| TMEM128 | MTERF1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| EXOC6B | MTERF1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | SET | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | MAP1B | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | DCTN1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | SYTL2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | DNAJC21 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | TENM3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ANK2 | MTERF1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | CTNNAL1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTERF1 | GOLPH2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (20): PNPO (Affinity Capture-MS), MTERF1 (Affinity Capture-MS), MTERF1 (Affinity Capture-MS), PNPO (Affinity Capture-MS), TMEM128 (Two-hybrid), MTERF1 (Affinity Capture-MS), MTERF1 (Affinity Capture-MS), PNPO (Affinity Capture-MS), MTERF1 (Affinity Capture-MS), MTERF1 (Affinity Capture-RNA), MTERF1 (Proximity Label-MS), MTERF1 (Affinity Capture-MS), GGCT (Cross-Linking-MS (XL-MS)), MTERF1 (Cross-Linking-MS (XL-MS)), MTERF1 (Affinity Capture-MS)
ESM2 similar proteins: A2WX30, A2XEV1, A3BN26, B4F8Z1, B4FTR7, B6TGN4, B6TTV8, B8AK78, B9EJ57, F4I933, F4IHL3, Q01IJ3, Q0DVX2, Q0JCU7, Q0WUF6, Q10CI8, Q10PZ4, Q49AM1, Q5N800, Q5QLS7, Q5R6G1, Q5R9U8, Q5VRY0, Q5XIE2, Q5ZJC8, Q60EH4, Q65XL5, Q67UU0, Q6ATB4, Q6AUK6, Q6EUK7, Q6K9C1, Q6P6Q6, Q6Y9P5, Q6YSY5, Q7X745, Q7XAP4, Q84QA7, Q84X53, Q8BKY8
Diamond homologs: B9EJ57, Q5R9U8, Q8CHZ9, Q99551, Q9EPI8, Q49AM1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
68 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 46 |
| Likely benign | 9 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
574 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:91874763:TG:T | acceptor_gain | 0.9900 |
| 7:91874767:G:C | acceptor_gain | 0.9900 |
| 7:91880500:A:C | donor_gain | 0.9900 |
| 7:91880655:AC:A | donor_gain | 0.9900 |
| 7:91880656:CC:C | donor_gain | 0.9900 |
| 7:91880694:T:TA | donor_gain | 0.9900 |
| 7:91874765:C:CC | acceptor_gain | 0.9800 |
| 7:91874762:ATG:A | acceptor_gain | 0.9700 |
| 7:91874767:G:GC | acceptor_gain | 0.9700 |
| 7:91880645:T:A | donor_gain | 0.9700 |
| 7:91874762:ATGCT:A | acceptor_gain | 0.9600 |
| 7:91874764:GCTG:G | acceptor_loss | 0.9600 |
| 7:91874764:GCTGT:G | acceptor_gain | 0.9600 |
| 7:91874765:C:CG | acceptor_loss | 0.9600 |
| 7:91876848:AT:A | donor_gain | 0.9600 |
| 7:91880646:C:A | donor_gain | 0.9600 |
| 7:91880695:C:A | donor_gain | 0.9600 |
| 7:91874761:AATG:A | acceptor_gain | 0.9500 |
| 7:91874765:CTGT:C | acceptor_gain | 0.9500 |
| 7:91880503:CAAA:C | donor_gain | 0.9500 |
| 7:91880504:AAAA:A | donor_gain | 0.9500 |
| 7:91880664:TG:T | donor_gain | 0.9500 |
| 7:91874760:AAATG:A | acceptor_gain | 0.9400 |
| 7:91874763:TGCT:T | acceptor_gain | 0.9400 |
| 7:91874682:T:TG | acceptor_gain | 0.9300 |
| 7:91874766:T:A | acceptor_gain | 0.9200 |
| 7:91880650:ATCT:A | donor_loss | 0.9200 |
| 7:91880652:CTCA:C | donor_loss | 0.9200 |
| 7:91880655:A:AT | donor_loss | 0.9200 |
| 7:91880656:C:CG | donor_loss | 0.9200 |
AlphaMissense
2640 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:91874358:A:G | W146R | 0.985 |
| 7:91874358:A:T | W146R | 0.985 |
| 7:91873709:C:G | R362P | 0.974 |
| 7:91874367:A:G | W143R | 0.973 |
| 7:91874367:A:T | W143R | 0.973 |
| 7:91874462:A:G | L111P | 0.973 |
| 7:91874293:A:C | F167L | 0.969 |
| 7:91874293:A:T | F167L | 0.969 |
| 7:91874295:A:G | F167L | 0.969 |
| 7:91874309:C:G | R162P | 0.969 |
| 7:91874050:G:C | S248R | 0.968 |
| 7:91874050:G:T | S248R | 0.968 |
| 7:91874052:T:G | S248R | 0.968 |
| 7:91874183:A:G | F204S | 0.968 |
| 7:91874182:G:C | F204L | 0.965 |
| 7:91874182:G:T | F204L | 0.965 |
| 7:91874184:A:G | F204L | 0.965 |
| 7:91874290:A:C | F168L | 0.963 |
| 7:91874290:A:T | F168L | 0.963 |
| 7:91874292:A:G | F168L | 0.963 |
| 7:91874307:A:G | S163P | 0.961 |
| 7:91874365:C:A | W143C | 0.960 |
| 7:91874365:C:G | W143C | 0.960 |
| 7:91874519:C:G | R92P | 0.960 |
| 7:91874303:G:T | P164H | 0.957 |
| 7:91874288:C:G | R169P | 0.956 |
| 7:91874408:G:T | P129Q | 0.956 |
| 7:91874141:A:G | L218S | 0.954 |
| 7:91874189:C:G | R202P | 0.954 |
| 7:91874161:A:C | N211K | 0.952 |
dbSNP variants (sampled 300 via entrez): RS1000064176 (7:91876291 G>A), RS1000459749 (7:91876591 G>A), RS1000622706 (7:91871733 C>G), RS1000647958 (7:91878969 C>T), RS1000672089 (7:91882327 C>G,T), RS1000712445 (7:91877587 C>A,T), RS1000969777 (7:91870925 C>A,G), RS1001315531 (7:91871168 C>A,T), RS1001504339 (7:91870695 G>A), RS1001636861 (7:91870978 C>T), RS1001885112 (7:91877983 C>T), RS1001941160 (7:91880946 T>A), RS1002518779 (7:91878523 T>C), RS1003155354 (7:91879430 T>C), RS1003359558 (7:91880446 G>A,C)
Disease associations
OMIM: gene MIM:602318 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_628 | Obesity-related traits | 3.000000e-06 |
| GCST006988_111 | Blond vs. brown/black hair color | 6.000000e-09 |
| GCST006993_10 | Hippocampal volume in Alzheimer’s disease dementia | 2.000000e-07 |
| GCST006997_2 | Cerebrospinal fluid t-tau levels in mild cognitive impairment | 5.000000e-06 |
| GCST006998_4 | Cerebrospinal fluid p-tau levels in mild cognitive impairment | 3.000000e-07 |
| GCST007096_222 | Pulse pressure | 2.000000e-09 |
| GCST007099_184 | Systolic blood pressure | 4.000000e-06 |
| GCST010083_166 | Hemoglobin levels | 3.000000e-08 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0003924 | hair color |
| EFO:0005035 | hippocampal volume |
| EFO:0004760 | t-tau measurement |
| EFO:0005763 | pulse pressure measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0004509 | hemoglobin measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Leflunomide | decreases expression | 2 |
| Arsenic | increases abundance, increases expression, affects cotreatment, decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| abrine | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| MT19c compound | increases expression | 1 |
| Vehicle Emissions | increases expression, increases abundance | 1 |
| Cannabidiol | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ribonucleotides | affects binding | 1 |
| Rotenone | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Aflatoxin M1 | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Particulate Matter | increases expression, increases abundance | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2CV | HAP1 MTERF (-) 2 | Cancer cell line | Male |
| CVCL_XQ67 | HAP1 MTERF (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.