MTF1
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Summary
MTF1 (metal regulatory transcription factor 1, HGNC:7428) is a protein-coding gene on chromosome 1p34.3, encoding Metal regulatory transcription factor 1 (Q14872). Zinc-dependent transcriptional regulator of cellular adaption to conditions of exposure to heavy metals. It is a selective cancer dependency (DepMap: 10.6% of cell lines).
This gene encodes a transcription factor that induces expression of metallothioneins and other genes involved in metal homeostasis in response to heavy metals such as cadmium, zinc, copper, and silver. The protein is a nucleocytoplasmic shuttling protein that accumulates in the nucleus upon heavy metal exposure and binds to promoters containing a metal-responsive element (MRE).
Source: NCBI Gene 4520 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability (Limited, GenCC)
- Clinical variants (ClinVar): 85 total
- Cancer dependency (DepMap): dependent in 10.6% of screened cell lines
- MANE Select transcript:
NM_005955
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7428 |
| Approved symbol | MTF1 |
| Name | metal regulatory transcription factor 1 |
| Location | 1p34.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000188786 |
| Ensembl biotype | protein_coding |
| OMIM | 600172 |
| Entrez | 4520 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 3 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000373036, ENST00000468190, ENST00000880495, ENST00000880496
RefSeq mRNA: 1 — MANE Select: NM_005955
NM_005955
CCDS: CCDS30676
Canonical transcript exons
ENST00000373036 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001367663 | 37839920 | 37840158 |
| ENSE00001370387 | 37857251 | 37857709 |
| ENSE00001371426 | 37832245 | 37832322 |
| ENSE00001374483 | 37859531 | 37859592 |
| ENSE00001377925 | 37838625 | 37838756 |
| ENSE00001379154 | 37835079 | 37835215 |
| ENSE00001384314 | 37822121 | 37822716 |
| ENSE00001385811 | 37823710 | 37823812 |
| ENSE00001388452 | 37835671 | 37835744 |
| ENSE00001459379 | 37809574 | 37815566 |
| ENSE00001459381 | 37817419 | 37817482 |
Expression profiles
Bgee: expression breadth ubiquitous, 273 present calls, max score 92.47.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.8755 / max 182.0710, expressed in 1694 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 11814 | 4.8298 | 1663 |
| 11813 | 1.0096 | 301 |
| 11812 | 0.0360 | 14 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 92.47 | gold quality |
| buccal mucosa cell | CL:0002336 | 91.33 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 90.99 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 89.76 | gold quality |
| squamous epithelium | UBERON:0006914 | 89.40 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 88.68 | gold quality |
| oocyte | CL:0000023 | 88.01 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 87.93 | silver quality |
| oral cavity | UBERON:0000167 | 87.69 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 87.63 | gold quality |
| bronchial epithelial cell | CL:0002328 | 87.38 | gold quality |
| bronchus | UBERON:0002185 | 87.33 | gold quality |
| nipple | UBERON:0002030 | 86.98 | gold quality |
| medial globus pallidus | UBERON:0002477 | 86.95 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 86.94 | silver quality |
| tendon of biceps brachii | UBERON:0008188 | 86.67 | gold quality |
| gingiva | UBERON:0001828 | 86.63 | gold quality |
| monocyte | CL:0000576 | 86.60 | gold quality |
| mononuclear cell | CL:0000842 | 86.57 | gold quality |
| bone marrow cell | CL:0002092 | 86.40 | gold quality |
| bone marrow | UBERON:0002371 | 86.39 | gold quality |
| leukocyte | CL:0000738 | 86.24 | gold quality |
| globus pallidus | UBERON:0001875 | 85.78 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 85.56 | gold quality |
| upper leg skin | UBERON:0004262 | 85.43 | gold quality |
| gingival epithelium | UBERON:0001949 | 85.17 | gold quality |
| blood | UBERON:0000178 | 84.32 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 84.03 | gold quality |
| cervix epithelium | UBERON:0004801 | 83.92 | gold quality |
| male germ cell | CL:0000015 | 83.63 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.95 |
Regulation
Is transcription factor: yes
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA0863.1 | MTF1 | More than 3 adjacent zinc fingers |
JASPAR matrix evidence (PMIDs): PMID:8265351
miRNA regulators (miRDB)
371 targeting MTF1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 10.6% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 25)
- role in regulating metallothionein transcription (PMID:11923282)
- MTF1 transactivation potential is affected by chromium levels (PMID:12716893)
- mediates transcriptional hyperactivation along with heat and heavy metal stress (PMID:12805380)
- MTF-1 contains a cysteine-rich cluster, -632Cys-Gln-Cys-Gln-Cys-Ala-Cys638-, which appears to be specifically required for MTF-1 to activate transcription in the presence of inducing heavy metal ions. (PMID:14610091)
- The MTF-1 serves targeted disruption of the MTF-1 gene results in death at embryonic day 14 due to liver degeneration and under hypoxic-anoxic stress, MTF-1 helps to activate the transcription of the gene PIGF. (PMID:15318808)
- SP1 and MTF-1 represent new targets in the development of key therapeutics toward modulating the expression of the cellular prion protein and ultimately the prevention of prion disease (PMID:18990686)
- Findings suggest that MTF-1 is involved in hypoxia-dependent regulation of PlGF in trophoblast-derived cells. (PMID:19022893)
- show that the acidic activation domain of hMTF-1 can work as a zinc-inducible activation domain independent of the full-length protein context. (PMID:19797083)
- Genetic regulation via sequences downstream of promoters highlights a new direction for identifying previously unrecognized target genes for MTF-1. (PMID:19913599)
- Loss of LI-cadherin results in up-regulation of MTF-1 and PlGF, thereby regulating angiogenesis in intrahepatic cholangiocarcinoma (PMID:19956853)
- Data show that hepcidin transcription involves interactions between functional metal response elements (MREs) in its promoter, and the MRE-binding transcription factor-1. (PMID:20026331)
- Zinc and cadmium can activate FPN1 transcription through the MTF-1. (PMID:20688958)
- Transcriptional regulation of the beta-synuclein 5’-promoter metal response element by metal transcription factor-1. (PMID:21386983)
- Variations in the ability of LAT1/DMT1/MTF1/MT1a to process and transport Hg may not play a significant role in the etiology of autism. (PMID:21798283)
- It is concluded that SUMO conjugation and the SIM on MTF-1 do not play a critical role in suppressing transcriptional activity. Instead, MTF-1 forms complexes with cellular factors through SIM and SUMO moiety in the cytoplasm (PMID:22021037)
- Results identify a cysteine cluster that mediates homodimerization of human MTF-1, and show that dimer formation in vivo is important for basal and especially metal-induced transcriptional activity. (PMID:22057392)
- The zinc-sensing cytoplasmic transcription factor MTF-1 plays a key role in cellular zinc homoeostasis. (PMID:23368743)
- Zn-responsive proteome profiling and time-dependent expression of proteins are regulated by MTF-1 in human alveolar epithelial cells. (PMID:25162517)
- Human ZnT2 expression is regulated by MTF-1. (PMID:25618524)
- MTF-1 has a role in regulating zinc dependent cellular processes at the molecular level [review] (PMID:26336656)
- Forty-one single nucleotide polymorphisms (SNPs) within the MTF1 gene region. (PMID:26529669)
- MTF1 heads a hierarchy of zinc sensors, and through controlling the expression of a raft of metallothioneins and other key proteins involved in controlling intracellular zinc levels (e.g. ZnT1) alters zinc buffering capacity and total cellular zinc content. (PMID:26824222)
- Genomic Redistribution of Metal-Response Transcription Factor-1 (MTF-1) in Cadmium Resistant Cells. (PMID:36980293)
- Knocking-down long non-coding RNA LINC01094 prohibits chondrocyte apoptosis via regulating microRNA-577/metal-regulatory transcription factor 1 axis. (PMID:38758016)
- MTF1 genetic variants are associated with lung cancer risk in the Chinese Han population. (PMID:38943058)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mtf1 | ENSDARG00000102898 |
| mus_musculus | Mtf1 | ENSMUSG00000028890 |
| rattus_norvegicus | Mtf1 | ENSRNOG00000025724 |
| drosophila_melanogaster | MTF-1 | FBGN0040305 |
Paralogs (36): ZBTB32 (ENSG00000011590), SNAI2 (ENSG00000019549), PRDM1 (ENSG00000057657), PRDM6 (ENSG00000061455), ZNF76 (ENSG00000065029), PATZ1 (ENSG00000100105), MAZ (ENSG00000103495), ZBTB16 (ENSG00000109906), ZNF451 (ENSG00000112200), ZBTB45 (ENSG00000119574), ZNF410 (ENSG00000119725), SNAI1 (ENSG00000124216), ZNF384 (ENSG00000126746), ZBTB1 (ENSG00000126804), VEZF1 (ENSG00000136451), PRDM14 (ENSG00000147596), ZNF276 (ENSG00000158805), ZNF362 (ENSG00000160094), ZNF653 (ENSG00000161914), ZNF281 (ENSG00000162702), ZNF148 (ENSG00000163848), ZNF143 (ENSG00000166478), HIC2 (ENSG00000169635), PRDM10 (ENSG00000170325), ZNF296 (ENSG00000170684), ZNF692 (ENSG00000171163), ZNF575 (ENSG00000176472), HIC1 (ENSG00000177374), ZBTB18 (ENSG00000179456), ZBTB42 (ENSG00000179627), ZBTB20 (ENSG00000181722), ZBTB7C (ENSG00000184828), SNAI3 (ENSG00000185669), ZFP91 (ENSG00000186660), SCRT2 (ENSG00000215397), SCRT1 (ENSG00000261678)
Protein
Protein identifiers
Metal regulatory transcription factor 1 — Q14872 (reviewed: Q14872)
Alternative names: MRE-binding transcription factor, Transcription factor MTF-1
All UniProt accessions (1): Q14872
UniProt curated annotations — full annotation on UniProt →
Function. Zinc-dependent transcriptional regulator of cellular adaption to conditions of exposure to heavy metals. Binds to metal responsive elements (MRE) in promoters and activates the transcription of metallothionein genes like metallothionein-2/MT2A. Also regulates the expression of metalloproteases in response to intracellular zinc and functions as a catabolic regulator of cartilages.
Subcellular location. Nucleus. Cytoplasm.
RefSeq proteins (1): NP_005946* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013087 | Znf_C2H2_type | Domain |
| IPR036236 | Znf_C2H2_sf | Homologous_superfamily |
| IPR051061 |
Pfam: PF00096
UniProt features (20 total): zinc finger region 6, compositionally biased region 4, region of interest 3, modified residue 3, initiator methionine 1, chain 1, short sequence motif 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14872-F1 | 50.01 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 2, 5, 305
Function
Pathways and Gene Ontology
Reactome pathways
10 pathways
| ID | Pathway |
|---|---|
| R-HSA-1989781 | PPARA activates gene expression |
| R-HSA-2426168 | Activation of gene expression by SREBF (SREBP) |
| R-HSA-5660489 | MTF1 activates gene expression |
| R-HSA-1430728 | Metabolism |
| R-HSA-1655829 | Regulation of cholesterol biosynthesis by SREBP (SREBF) |
| R-HSA-400206 | Regulation of lipid metabolism by PPARalpha |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-5660526 | Response to metal ions |
| R-HSA-8953897 | Cellular responses to stimuli |
| R-HSA-8957322 | Metabolism of steroids |
MSigDB gene sets: 325 (showing top):
GOBP_RESPONSE_TO_ZINC_ION, GGGNRMNNYCAT_UNKNOWN, IVANOVA_HEMATOPOIESIS_MATURE_CELL, BROWNE_HCMV_INFECTION_12HR_UP, GGGTGGRR_PAX4_03, GOBP_RESPONSE_TO_METAL_ION, MODULE_120, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM1, GGAANCGGAANY_UNKNOWN, BLALOCK_ALZHEIMERS_DISEASE_UP, chr1p34, GOBP_CELLULAR_RESPONSE_TO_ZINC_ION, ATF4_Q2, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN
GO Biological Process (10): DNA-templated transcription (GO:0006351), regulation of transcription by RNA polymerase II (GO:0006357), response to oxidative stress (GO:0006979), central nervous system development (GO:0007417), response to metal ion (GO:0010038), positive regulation of transcription by RNA polymerase II (GO:0045944), response to cadmium ion (GO:0046686), cellular response to zinc ion (GO:0071294), cartilage homeostasis (GO:1990079), positive regulation of DNA-templated transcription (GO:0045893)
GO Molecular Function (10): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), cis-regulatory region sequence-specific DNA binding (GO:0000987), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), zinc ion binding (GO:0008270), histone acetyltransferase binding (GO:0035035), sequence-specific double-stranded DNA binding (GO:1990837), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Metabolism of lipids | 2 |
| Regulation of lipid metabolism by PPARalpha | 1 |
| Regulation of cholesterol biosynthesis by SREBP (SREBF) | 1 |
| Response to metal ions | 1 |
| Metabolism of steroids | 1 |
| Metabolism | 1 |
| Cellular responses to stimuli | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 3 |
| transcription by RNA polymerase II | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| transcription cis-regulatory region binding | 2 |
| cellular anatomical structure | 2 |
| gene expression | 1 |
| RNA biosynthetic process | 1 |
| response to stress | 1 |
| nervous system development | 1 |
| system development | 1 |
| response to chemical | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| response to metal ion | 1 |
| response to zinc ion | 1 |
| cellular response to metal ion | 1 |
| tissue homeostasis | 1 |
| DNA-templated transcription | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| DNA-binding transcription activator activity | 1 |
| positive regulation of transcription by RNA polymerase II | 1 |
| nucleic acid binding | 1 |
| transcription regulator activity | 1 |
| transition metal ion binding | 1 |
| enzyme binding | 1 |
| double-stranded DNA binding | 1 |
| sequence-specific DNA binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
929 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MTF1 | H3BSS0 | H3BSS0 | 891 |
| MTF1 | SLC30A1 | Q9Y6M5 | 690 |
| MTF1 | SLC39A8 | Q9C0K1 | 578 |
| MTF1 | MT1A | P04731 | 549 |
| MTF1 | SLC30A2 | Q9BRI3 | 526 |
| MTF1 | BANF1 | O75531 | 525 |
| MTF1 | ATP7B | P35670 | 516 |
| MTF1 | SLC30A5 | Q8TAD4 | 508 |
| MTF1 | MT2A | P02795 | 506 |
| MTF1 | JUN | P05412 | 497 |
| MTF1 | MT1X | P80297 | 454 |
| MTF1 | SLC30A9 | Q6PML9 | 445 |
| MTF1 | ZPR1 | O75312 | 440 |
| MTF1 | HNF1A | P20823 | 433 |
| MTF1 | PROM2 | Q8N271 | 432 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AP1M1 | MTF1 | psi-mi:“MI:0915”(physical association) | 0.620 |
| MTF1 | AP1M1 | psi-mi:“MI:0915”(physical association) | 0.620 |
BioGRID (121): AP1M1 (Two-hybrid), NPM1 (Co-localization), NPM1 (Affinity Capture-Western), DNAJC2 (Affinity Capture-MS), PRPF8 (Affinity Capture-MS), DHX9 (Affinity Capture-MS), HNRNPU (Affinity Capture-MS), MYBBP1A (Affinity Capture-MS), SNRNP200 (Affinity Capture-MS), DDX21 (Affinity Capture-MS), NCL (Affinity Capture-MS), HNRNPM (Affinity Capture-MS), RPL3 (Affinity Capture-MS), HSPA14 (Affinity Capture-MS), PARP1 (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8H0H2, A0JN51, A4QNP0, F8VPJ6, O13186, O46567, O57415, O70477, O94842, P09775, P15257, P22361, P28324, P32519, P36197, P37275, P50534, P55347, P59759, P79686, Q05041, Q07243, Q0P5K4, Q14872, Q15723, Q2HJ84, Q2KHR2, Q3UH06, Q5R6A9, Q5W1J6, Q60542, Q60775, Q61321, Q62947, Q64318, Q6DJL0, Q6IRR0, Q6XLJ0, Q86T24, Q8AYC1
Diamond homologs: Q07243, Q14872, Q19A41
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MTF1 | “up-regulates quantity by expression” | GCLC | “transcriptional regulation” |
| MTF1 | “up-regulates quantity by expression” | MCAT | “transcriptional regulation” |
| MTF1 | “up-regulates quantity by expression” | SOD1 | “transcriptional regulation” |
| LATS1 | “down-regulates activity” | MTF1 | phosphorylation |
| LATS2 | “down-regulates activity” | MTF1 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
85 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 61 |
| Likely benign | 7 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
4921 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:37835152:A:G | L306P | 1.000 |
| 1:37835169:G:C | F300L | 1.000 |
| 1:37835169:G:T | F300L | 1.000 |
| 1:37835171:A:G | F300L | 1.000 |
| 1:37835198:A:G | C291R | 1.000 |
| 1:37835675:A:C | H283Q | 1.000 |
| 1:37835675:A:T | H283Q | 1.000 |
| 1:37835677:G:C | H283D | 1.000 |
| 1:37835687:G:C | H279Q | 1.000 |
| 1:37835687:G:T | H279Q | 1.000 |
| 1:37835689:G:C | H279D | 1.000 |
| 1:37835697:A:G | L276P | 1.000 |
| 1:37835714:A:C | F270L | 1.000 |
| 1:37835714:A:T | F270L | 1.000 |
| 1:37835715:A:G | F270S | 1.000 |
| 1:37835716:A:G | F270L | 1.000 |
| 1:37835727:C:G | C266S | 1.000 |
| 1:37835728:A:G | C266R | 1.000 |
| 1:37835728:A:T | C266S | 1.000 |
| 1:37835742:C:G | C261S | 1.000 |
| 1:37835743:A:G | C261R | 1.000 |
| 1:37835743:A:T | C261S | 1.000 |
| 1:37838667:A:G | L246P | 1.000 |
| 1:37838684:G:C | F240L | 1.000 |
| 1:37838684:G:T | F240L | 1.000 |
| 1:37838685:A:G | F240S | 1.000 |
| 1:37838686:A:G | F240L | 1.000 |
| 1:37838713:A:G | C231R | 1.000 |
| 1:37838746:G:C | H220D | 1.000 |
| 1:37838754:A:G | L217P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000023763 (1:37859321 C>T), RS1000077481 (1:37837598 C>G,T), RS1000091003 (1:37852640 T>TC), RS1000096267 (1:37820944 G>A), RS1000145812 (1:37810872 G>T), RS1000177316 (1:37810607 A>C), RS1000302993 (1:37859032 G>A,C), RS1000377191 (1:37817305 T>A), RS1000418540 (1:37813612 C>A), RS1000430412 (1:37820286 T>A), RS1000459602 (1:37818980 G>A,C), RS1000513224 (1:37812126 G>A), RS1000528482 (1:37858454 G>A), RS1000640324 (1:37857408 A>G,T), RS1000763181 (1:37818586 C>A)
Disease associations
OMIM: gene MIM:600172 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability | Limited | Autosomal dominant |
Mondo (2): autism spectrum disorder (MONDO:0005258), intellectual disability (MONDO:0001071)
Orphanet (1): NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
65 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Zinc | increases reaction, affects binding, decreases reaction, increases activity, increases expression (+3 more) | 11 |
| Cadmium | decreases expression, increases abundance, increases expression, decreases reaction, increases activity (+6 more) | 9 |
| Cadmium Chloride | affects localization, increases reaction, decreases activity, decreases phosphorylation, decreases reaction (+6 more) | 8 |
| Zinc Sulfate | increases activity, decreases reaction, affects reaction, increases abundance, affects localization (+4 more) | 6 |
| Copper | affects binding, increases reaction, increases activity, decreases expression, affects reaction (+3 more) | 4 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression, affects phosphorylation | 3 |
| N,N,N’,N’-tetrakis(2-pyridylmethyl)ethylenediamine | decreases reaction, increases expression | 3 |
| zinc chloride | decreases phosphorylation, affects binding, decreases reaction, increases reaction, decreases expression (+1 more) | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Disulfiram | affects binding, decreases expression, affects reaction, increases expression | 2 |
| Potassium Dichromate | affects phosphorylation, increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| Copper Sulfate | decreases expression, increases expression | 2 |
| 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride | affects binding, increases reaction | 1 |
| dicrotophos | increases expression | 1 |
| alexidine | affects reaction, increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases activity | 1 |
| lead acetate | affects phosphorylation | 1 |
| thallium sulfate | affects reaction, increases expression | 1 |
| arsenite | increases expression, increases degradation | 1 |
| bisphenol A diglycidyl ether | increases activity | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| gallium nitrate | increases expression | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| nickel sulfate | affects phosphorylation | 1 |
| cupric oxide | increases expression | 1 |
| aluminum sulfate | decreases expression | 1 |
| chromium hexavalent ion | decreases response to substance, affects binding, decreases reaction, decreases activity | 1 |
| tris(2-carboxyethyl)phosphine | affects binding, decreases reaction, increases reaction | 1 |
Clinical trials (associated diseases)
496 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
Related Atlas pages
- Associated diseases: intellectual disability