MTM1
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Summary
MTM1 (myotubularin 1, HGNC:7448) is a protein-coding gene on chromosome Xq28, encoding Myotubularin (Q13496). Lipid phosphatase which dephosphorylates phosphatidylinositol 3-monophosphate (PI3P) and phosphatidylinositol 3,5-bisphosphate (PI(3,5)P2). It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a dual-specificity phosphatase that acts on both phosphotyrosine and phosphoserine. It is required for muscle cell differentiation and mutations in this gene have been identified as being responsible for X-linked myotubular myopathy.
Source: NCBI Gene 4534 — RefSeq curated summary.
At a glance
- Gene–disease (curated): X-linked myotubular myopathy (Definitive, ClinGen)
- Clinical variants (ClinVar): 947 total — 183 pathogenic, 84 likely-pathogenic
- Phenotypes (HPO): 63
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000252
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7448 |
| Approved symbol | MTM1 |
| Name | myotubularin 1 |
| Location | Xq28 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000171100 |
| Ensembl biotype | protein_coding |
| OMIM | 300415 |
| Entrez | 4534 |
Gene structure
Transcript identifiers
Ensembl transcripts: 58 — 44 protein_coding, 7 nonsense_mediated_decay, 5 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000306167, ENST00000370393, ENST00000370396, ENST00000490530, ENST00000684910, ENST00000685439, ENST00000685944, ENST00000686212, ENST00000687215, ENST00000687365, ENST00000688152, ENST00000688403, ENST00000689314, ENST00000689694, ENST00000689810, ENST00000690282, ENST00000690351, ENST00000691232, ENST00000691482, ENST00000691686, ENST00000691851, ENST00000692015, ENST00000692638, ENST00000692852, ENST00000692915, ENST00000693422, ENST00000866457, ENST00000866458, ENST00000866459, ENST00000866460, ENST00000866461, ENST00000866462, ENST00000866463, ENST00000866464, ENST00000866465, ENST00000866466, ENST00000866467, ENST00000866468, ENST00000866469, ENST00000866470, ENST00000866471, ENST00000866472, ENST00000866473, ENST00000866474, ENST00000866475, ENST00000866476, ENST00000866477, ENST00000866478, ENST00000866479, ENST00000924084, ENST00000924085, ENST00000924086, ENST00000949259, ENST00000949260, ENST00000949261, ENST00000949262, ENST00000949263, ENST00000949264
RefSeq mRNA: 4 — MANE Select: NM_000252
NM_000252, NM_001376906, NM_001376907, NM_001376908
CCDS: CCDS14694
Canonical transcript exons
ENST00000370396 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001209472 | 150568621 | 150568662 |
| ENSE00001209481 | 150598592 | 150598686 |
| ENSE00001452583 | 150671428 | 150673143 |
| ENSE00003471580 | 150659664 | 150659756 |
| ENSE00003480949 | 150614589 | 150614699 |
| ENSE00003515670 | 150657821 | 150658027 |
| ENSE00003566589 | 150645683 | 150645871 |
| ENSE00003580713 | 150660371 | 150660484 |
| ENSE00003623254 | 150638943 | 150639026 |
| ENSE00003638194 | 150663433 | 150663609 |
| ENSE00003647417 | 150649716 | 150649901 |
| ENSE00003647423 | 150592605 | 150592677 |
| ENSE00003648599 | 150641269 | 150641418 |
| ENSE00003672204 | 150596498 | 150596570 |
| ENSE00003684863 | 150619038 | 150619139 |
Expression profiles
Bgee: expression breadth ubiquitous, 281 present calls, max score 92.40.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.3255 / max 72.6903, expressed in 1714 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 197968 | 8.3255 | 1714 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 92.40 | gold quality |
| rectum | UBERON:0001052 | 88.77 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 87.84 | gold quality |
| monocyte | CL:0000576 | 87.12 | gold quality |
| colonic mucosa | UBERON:0000317 | 86.99 | gold quality |
| mononuclear cell | CL:0000842 | 86.66 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 86.36 | gold quality |
| leukocyte | CL:0000738 | 86.35 | gold quality |
| jejunal mucosa | UBERON:0000399 | 85.54 | gold quality |
| colonic epithelium | UBERON:0000397 | 85.46 | gold quality |
| calcaneal tendon | UBERON:0003701 | 85.22 | gold quality |
| bone marrow cell | CL:0002092 | 85.19 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 84.07 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.03 | gold quality |
| transverse colon | UBERON:0001157 | 83.99 | gold quality |
| right adrenal gland | UBERON:0001233 | 83.81 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 83.81 | gold quality |
| oocyte | CL:0000023 | 83.74 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 83.53 | gold quality |
| left adrenal gland | UBERON:0001234 | 83.06 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 82.73 | gold quality |
| hair follicle | UBERON:0002073 | 82.29 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 82.21 | gold quality |
| adrenal gland | UBERON:0002369 | 82.17 | gold quality |
| large intestine | UBERON:0000059 | 82.12 | gold quality |
| seminal vesicle | UBERON:0000998 | 82.00 | gold quality |
| muscle of leg | UBERON:0001383 | 81.97 | gold quality |
| colon | UBERON:0001155 | 81.96 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.91 | gold quality |
| gastrocnemius | UBERON:0001388 | 81.87 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.67 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
126 targeting MTM1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Myotubularin is the 2nd member of the PTP superfamily to utilize an inositol lipid as its physiologic substrate and activity toward PI(3)P may be common to all myotubularin family enzymes. Loss of PI(3)P phosphatase activity correlates with human disease. (PMID:10900271)
- Expression of human myotubularin inhibited growth of S. pombe and induced a vacuolar phenotype similar to mutants of VPS34, a phosphatidylinositol 3-kinase (PI3K). Myotubularin directly dephosphorylates phosphatidylinositol 3-monophosphate (PtdIns3P) (PMID:11001925)
- Shows that most MTM1 mutations including missense lead to a strong decrease in protein level : the associated myotubular myopathy is most probably due to total loss-of-function (PMID:11456308)
- Heterozygous female carriers of MTM1 mutations who develop myopathic symptoms may present with limb girdle and facial weakness and may manifest a skewed pattern of X-chromosome inactivation. (PMID:11552027)
- mutations in fifty patients with X-linked myotubular myopathy in the United States (PMID:11793470)
- The phosphatase activity of myotubularin MTM1 towards the 3-position of phosphatidylinositol 3-phosphate is conserved in homologous proteins MTMR2 and MTMR3 (PMID:11846405)
- Localization to Rac1-induced cell membrane ruffles is dependent on the presence of a domain highly conserved in the myotubularin family. Myotubularin may dephosphorylate a subpool of PtdIns3P at the plasma membrane. (PMID:12118066)
- Knocking-out MTM1 in mouse reproduces a myotubular myopathy phenotype and suggests a role for myotubularin in structural organization of muscle fibers (PMID:12391329)
- REVIEW: the cellular mechanisms of PTEN and MTMR function and their role in the etiology of cancer and other human diseases (PMID:12495846)
- 192 different mutations in the MTM1 gene have been described in 328 families. (PMID:12522554)
- investigation of MTM1 and MTMR6 and finding that they use PtdIns(3,5)P2 in addition to PtdIns3P as a substrate in vitro (PMID:12646134)
- Identification of myotubularin as the lipid phosphatase catalytic subunit associated with the 3-phosphatase adapter protein, 3-PAP. (PMID:12847286)
- REVIEW: Myotubularin defines a large family of cooperating catalytically active and inactive phosphatases, conserved from yeast to human. Myotubularin homologs, MTMR2 and MTMR13, are mutated in autosomal recessive Charcot-Marie-Tooth neuropathies. (PMID:12925573)
- Myotubularin MTM1 is implicated in intracellular trafficking of the glucose receptor GLUT4 (PMID:14500759)
- role of MTM1 in the production of phosphatidylinositol 5-phosphate in mammalian cells suggesting the lack of transformation of phosphatidylinositol 3,5-bisphosphate into PtdIns(5)P might be an important component in the etiology of myotubular myopathy (PMID:14660569)
- myotubularin phosphatase physiologically functions in late endosomal trafficking and vacuolar morphology through interaction with PtdIns(3,5)P(2). (PMID:14722070)
- We newly identified 26 unrelated Japanese patients with MTM1 mutations by genomic DNA and transcript analysis, including 12 novel mutations. (PMID:15725586)
- Two families had a myopathy affecting only women, with asymmetric weakness, skeletal asymmetry, and an elevated hemidiaphragm. One family had a myotubularin stop codon mutation in exon 9; the other had a splice site mutation in exon 13. (PMID:15883335)
- Patients with MTM1 missense mutations had larger myofiber diameters than those with truncation/deletion mutations. These data indicate that differences in myofiber size correlate with MTM1 mutation type and patient outcome. (PMID:17537630)
- X-linked myotubular myopathy of baby boy has new mutation of mtm1. (PMID:17621527)
- The diagnosis of myotubular myopathy was confirmed by genetic analysis revealing a novel frameshift mutation (1314-1315insT) of the myotubularin-coding MTM1 gene. (PMID:17827085)
- REVIEW : MTM1 and homologous proteins are mutated in several neuromuscular diseases (PMID:18429927)
- A phylogenetic study revealing co-evolution of myotubularins with PI 3-kinase class III complex (PMID:18774718)
- Data show that an atypical, late-onset form of MTM1-related centronuclear myopathy has a new histological marker “Necklace fibers”. (PMID:19084976)
- A base pair change was detected in exon 11 of the MTM1 gene: c.1160C>A, which caused an amino acid change, p.S387Y. The father’s gene was normal but the mother had the same mutation as her son and was thus a carrier. (PMID:19129059)
- Disruption of MTM1 in mouse leads to defects in triad structure, a proposed mechanism for the related muscle disease (PMID:19846786)
- Myotubularin MTM1 forms cytosolic needle-like structures upon stress (PMID:20140253)
- hemizygous mutations in the MTM1 gene including c.1261-10A>G in case, 1, c.70C>T (R24X) in case 2, and a previously unreported mutation, c.924_926delCTT(p. F308del), in case 3 (PMID:20358311)
- Novel MTM1 antibodies for molecular diagnosis, and identification of novel deep intronic mutations (PMID:20434914)
- Sequence analysis of the entire coding region of the MTM1 gene identified a hemizygous deletion of the T nucleotide at position 431 in exon 6 (c.431delT [p.Leu144fs]), which results in frameshift at codon 144. (PMID:20500434)
- mutations in MTM1 disrupted the MTM1-desmin complex, resulting in abnormal intermediate filament assembly and architecture in muscle cells (PMID:21135508)
- Myotubularin regulates Akt-dependent survival signaling via phosphatidylinositol 3-phosphate. (PMID:21478156)
- A nonsense mutation Arg486STOP was identified in exon 7 of the MTM1 gene. (PMID:21488203)
- data explain the basis for phenotypic variability among human patients with MTM1 p.R69C mutations and establish the Mtm1 p.R69C mouse as a valuable model for the disease, as its less severe phenotype will expand the scope of testable preclinical therapies (PMID:22068590)
- The patients of Myopathy had a novel heterozygous splice site mutation in the myotubularin gene, MTM1 (c.867+1G>T). Analysis of MTM1 cDNA revealed that the mutation resulted in aberrant splicing with variable exon skipping. (PMID:22101172)
- Mutations in specific myotubularins such as MTM1 result in myotubular myopathy and Charcot-Marie-Tooth peripheral neuropathy. (Review) (PMID:22403079)
- Large duplications in MTM1 may account for a number of Centronuclear myopathy cases that have remained genetically unresolved. (PMID:22968136)
- Analysis of human XLMTM patient myotubes showed that mutations that disrupt the interaction between myotubularin and MTMR12 proteins result in reduction of both myotubularin and MTMR12 (PMID:23818870)
- mutations in SPEG cause a centronuclear myopathy phenotype as a result of its interaction with MTM1. (PMID:25087613)
- This study demonistrated that MTM1 mutation releated to Centronuclear myopathy. (PMID:25957634)
Cross-species orthologs
15 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mtm1 | ENSDARG00000037560 |
| mus_musculus | Mtm1 | ENSMUSG00000031337 |
| rattus_norvegicus | Mtm1 | ENSRNOG00000002516 |
| drosophila_melanogaster | mtm | FBGN0025742 |
| drosophila_melanogaster | Sbf | FBGN0025802 |
| drosophila_melanogaster | Mtmr6 | FBGN0028497 |
| drosophila_melanogaster | CG14411 | FBGN0030582 |
| drosophila_melanogaster | CG3632 | FBGN0030735 |
| drosophila_melanogaster | CG5026 | FBGN0035945 |
| caenorhabditis_elegans | mtm-1 | WBGENE00003475 |
| caenorhabditis_elegans | WBGENE00003476 | |
| caenorhabditis_elegans | WBGENE00003477 | |
| caenorhabditis_elegans | WBGENE00003478 | |
| caenorhabditis_elegans | WBGENE00003479 | |
| caenorhabditis_elegans | mtm-10 | WBGENE00021683 |
Paralogs (13): MTMR7 (ENSG00000003987), MTMR11 (ENSG00000014914), MTMR1 (ENSG00000063601), MTMR2 (ENSG00000087053), SBF1 (ENSG00000100241), MTMR3 (ENSG00000100330), MTMR8 (ENSG00000102043), MTMR9 (ENSG00000104643), MTMR4 (ENSG00000108389), SBF2 (ENSG00000133812), MTMR6 (ENSG00000139505), MTMR12 (ENSG00000150712), MTMR10 (ENSG00000166912)
Protein
Protein identifiers
Myotubularin — Q13496 (reviewed: Q13496)
Alternative names: Phosphatidylinositol-3,5-bisphosphate 3-phosphatase, Phosphatidylinositol-3-phosphate phosphatase
All UniProt accessions (15): A0A8I5KNI6, A0A8I5KQR6, A0A8I5KRS4, A0A8I5KT87, A0A8I5KVB1, A0A8I5KVR9, A0A8I5KW93, A0A8I5KYA6, A0A8I5KYJ1, A0A8I5KZ76, A0A8I5KZ85, A0A8I5QJL1, A0A8I5QJV9, B7Z499, Q13496
UniProt curated annotations — full annotation on UniProt →
Function. Lipid phosphatase which dephosphorylates phosphatidylinositol 3-monophosphate (PI3P) and phosphatidylinositol 3,5-bisphosphate (PI(3,5)P2). Has also been shown to dephosphorylate phosphotyrosine- and phosphoserine-containing peptides. Negatively regulates EGFR degradation through regulation of EGFR trafficking from the late endosome to the lysosome. Plays a role in vacuolar formation and morphology. Regulates desmin intermediate filament assembly and architecture. Plays a role in mitochondrial morphology and positioning. Required for skeletal muscle maintenance but not for myogenesis. In skeletal muscles, stabilizes MTMR12 protein levels.
Subunit / interactions. Heterodimer with MTMR12. Interacts with KMT2A/MLL1 (via SET domain). Interacts with DES in skeletal muscle but not in cardiac muscle. Interacts with SPEG.
Subcellular location. Cytoplasm. Cell membrane. Cell projection. Filopodium. Ruffle. Late endosome. Myofibril. Sarcomere.
Disease relevance. Myopathy, centronuclear, X-linked (CNMX) [MIM:310400] A congenital muscle disorder characterized by progressive muscular weakness and wasting involving mainly limb girdle, trunk, and neck muscles. It may also affect distal muscles. Weakness may be present during childhood or adolescence or may not become evident until the third decade of life. Ptosis is a frequent clinical feature. The most prominent histopathologic features include high frequency of centrally located nuclei in muscle fibers not secondary to regeneration, radial arrangement of sarcoplasmic strands around the central nuclei, and predominance and hypotrophy of type 1 fibers. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Allosterically activated by phosphatidylinositol 5-phosphate (PI5P).
Domain organisation. The GRAM domain mediates binding to PI(3,5)P2 and, with lower affinity, to other phosphoinositides.
Similarity. Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13496-1 | 1 | yes |
| Q13496-2 | 2 |
RefSeq proteins (4): NP_000243, NP_001363835, NP_001363836, NP_001363837 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000387 | Tyr_Pase_dom | Domain |
| IPR003595 | Tyr_Pase_cat | Domain |
| IPR004182 | GRAM | Domain |
| IPR010569 | Myotubularin-like_Pase_dom | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR016130 | Tyr_Pase_AS | Active_site |
| IPR029021 | Prot-tyrosine_phosphatase-like | Homologous_superfamily |
| IPR030564 | Myotubularin | Family |
Pfam: PF02893, PF06602
Enzyme classification (BRENDA):
- EC 3.1.3.64 — phosphatidylinositol-3-phosphatase (BRENDA: 10 organisms, 32 substrates, 7 inhibitors, 2 Km, 0 kcat entries)
- EC 3.1.3.95 — phosphatidylinositol-3,5-bisphosphate 3-phosphatase (BRENDA: 2 organisms, 16 substrates, 1 inhibitors, 0 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| INOSITOL 1,3-BISPHOSPHATE | 0.0008–0.0037 | 2 |
Catalyzed reactions (Rhea), 5 shown:
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate (RHEA:12316)
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,5-bisphosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + phosphate (RHEA:39019)
- 1,2-dioctanoyl-sn-glycero-3-phospho-(1-D-myo-inositol-3-phosphate) + H2O = 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate (RHEA:42328)
- 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol-3,5-bisphosphate) + H2O = 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + phosphate (RHEA:45632)
- 1,2-dihexadecanoyl-sn-glycero-3-phospho-(1D-myo-inositol-3,5-bisphosphate) + H2O = 1,2-dihexadecanoyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + phosphate (RHEA:45636)
UniProt features (114 total): sequence variant 61, binding site 21, mutagenesis site 18, modified residue 4, domain 2, region of interest 2, compositionally biased region 2, chain 1, sequence conflict 1, splice variant 1, active site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13496-F1 | 90.10 | 0.80 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 375 (phosphocysteine intermediate)
Ligand- & substrate-binding residues (21): 313; 313; 314; 314; 376; 376; 377; 377; 378; 378; 379; 379 …
Post-translational modifications (4): 13, 18, 495, 588
Mutagenesis-validated functional residues (18):
| Position | Phenotype |
|---|---|
| 255 | disrupts interaction with des. |
| 257 | no effect on subcellular location. |
| 269 | disrupts interaction with des. does not affect lipid phosphatase activity. |
| 278 | localizes to plasma membrane extensions. does not affect interaction with des. |
| 375 | no effect on subcellular location. |
| 375 | lacks activity toward pi3p. does not affect interaction with des or mtmr12. |
| 377 | no effect on subcellular location. |
| 380 | does not affect interaction with des. |
| 394 | produces an unstable protein. |
| 410 | produces an unstable protein. |
| 420 | does not affect interaction with des. |
| 443 | produces an unstable protein. |
| 474–603 | reduces mtmr12 protein levels in myotubes. |
| 114 | reduced response to pi5p. |
| 181 | disrupts interaction with des. does not affect lipid phosphatase activity. |
| 206 | disrupts interaction with des. does not affect lipid phosphatase activity. |
| 209 | disrupts interaction with des. does not affect lipid phosphatase activity. |
| 220 | loss of activity. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1660499 | Synthesis of PIPs at the plasma membrane |
| R-HSA-1660516 | Synthesis of PIPs at the early endosome membrane |
| R-HSA-1660517 | Synthesis of PIPs at the late endosome membrane |
| R-HSA-1430728 | Metabolism |
| R-HSA-1483255 | PI Metabolism |
| R-HSA-1483257 | Phospholipid metabolism |
| R-HSA-556833 | Metabolism of lipids |
MSigDB gene sets: 0 (showing top):
GO Biological Process (22): autophagosome assembly (GO:0000045), protein dephosphorylation (GO:0006470), phosphatidylinositol biosynthetic process (GO:0006661), mitochondrion organization (GO:0007005), endosome to lysosome transport (GO:0008333), protein transport (GO:0015031), TOR signaling (GO:0031929), negative regulation of TOR signaling (GO:0032007), negative regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032435), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0043491), regulation of vacuole organization (GO:0044088), intermediate filament organization (GO:0045109), muscle cell cellular homeostasis (GO:0046716), phosphatidylinositol dephosphorylation (GO:0046856), mitochondrion distribution (GO:0048311), skeletal muscle tissue growth (GO:0048630), positive regulation of skeletal muscle tissue growth (GO:0048633), negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051898), negative regulation of autophagosome assembly (GO:1902902), lipid metabolic process (GO:0006629), dephosphorylation (GO:0016311)
GO Molecular Function (7): phosphatidylinositol-3-phosphate phosphatase activity (GO:0004438), phosphoprotein phosphatase activity (GO:0004721), intermediate filament binding (GO:0019215), phosphatidylinositol binding (GO:0035091), phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (GO:0052629), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (12): ruffle (GO:0001726), cytoplasm (GO:0005737), late endosome (GO:0005770), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020), filopodium (GO:0030175), I band (GO:0031674), endosome (GO:0005768), endomembrane system (GO:0012505), sarcomere (GO:0030017), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| PI Metabolism | 3 |
| Phospholipid metabolism | 1 |
| Metabolism of lipids | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 7 |
| phosphatidylinositol metabolic process | 2 |
| negative regulation of intracellular signal transduction | 2 |
| binding | 2 |
| Atg12 activating enzyme activity | 1 |
| protein-phosphatidylethanolamide deconjugating activity | 1 |
| Atg12 conjugating enzyme activity | 1 |
| Atg12 ligase activity | 1 |
| organelle assembly | 1 |
| Atg1/ULK1 kinase complex assembly | 1 |
| autophagosome organization | 1 |
| dephosphorylation | 1 |
| protein modification process | 1 |
| biosynthetic process | 1 |
| organelle organization | 1 |
| lysosomal transport | 1 |
| intercellular transport | 1 |
| vesicle-mediated transport | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| intracellular signal transduction | 1 |
| TOR signaling | 1 |
| regulation of TOR signaling | 1 |
| regulation of proteasomal ubiquitin-dependent protein catabolic process | 1 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 1 |
| negative regulation of proteasomal protein catabolic process | 1 |
| negative regulation of ubiquitin-dependent protein catabolic process | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| intracellular signaling cassette | 1 |
| vacuole organization | 1 |
| regulation of organelle organization | 1 |
| intermediate filament cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| cellular homeostasis | 1 |
| phospholipid dephosphorylation | 1 |
| mitochondrion localization | 1 |
| skeletal muscle tissue development | 1 |
| developmental growth | 1 |
Protein interactions and networks
STRING
1276 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MTM1 | MTMR14 | Q8NCE2 | 949 |
| MTM1 | PIK3C3 | Q8NEB9 | 939 |
| MTM1 | DNM2 | P50570 | 926 |
| MTM1 | MAMLD1 | Q13495 | 908 |
| MTM1 | HACD1 | B0YJ81 | 862 |
| MTM1 | RYR1 | P21817 | 842 |
| MTM1 | PIK3R4 | Q99570 | 815 |
| MTM1 | BIN1 | O00499 | 761 |
| MTM1 | SPEG | Q15772 | 702 |
| MTM1 | FIG4 | Q92562 | 604 |
| MTM1 | CCDC78 | A2IDD5 | 596 |
| MTM1 | CMTM1 | Q8IZ96 | 578 |
| MTM1 | DYSF | O75923 | 570 |
| MTM1 | PLEK2 | Q9NYT0 | 562 |
| MTM1 | CACNA1S | Q13698 | 561 |
IntAct
47 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DES | MTM1 | psi-mi:“MI:0915”(physical association) | 0.710 |
| MTM1 | DES | psi-mi:“MI:0407”(direct interaction) | 0.710 |
| MTM1 | DES | psi-mi:“MI:0915”(physical association) | 0.710 |
| DES | MTM1 | psi-mi:“MI:0403”(colocalization) | 0.710 |
| DES | MTM1 | psi-mi:“MI:0407”(direct interaction) | 0.710 |
| DES | DES | psi-mi:“MI:0915”(physical association) | 0.710 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| MTM1 | BIN1 | psi-mi:“MI:0915”(physical association) | 0.600 |
| BIN1 | MTM1 | psi-mi:“MI:0915”(physical association) | 0.600 |
| MTM1 | BIN1 | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| MTM1 | MTMR12 | psi-mi:“MI:0915”(physical association) | 0.570 |
| MTMR12 | MTM1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| MTM1 | MTMR12 | psi-mi:“MI:0407”(direct interaction) | 0.570 |
| MTM1 | MTMR12 | psi-mi:“MI:0403”(colocalization) | 0.570 |
| TRIML2 | SRGAP2 | psi-mi:“MI:0914”(association) | 0.530 |
| Pip4k2a | MTM1 | psi-mi:“MI:0914”(association) | 0.500 |
| Pip4k2a | MTM1 | psi-mi:“MI:0915”(physical association) | 0.500 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| MTM1 | Des | psi-mi:“MI:0915”(physical association) | 0.460 |
BioGRID (92): MTM1 (Reconstituted Complex), MTM1 (Affinity Capture-Western), BIN1 (Affinity Capture-Western), CUL4A (Co-fractionation), HLA-C (Affinity Capture-MS), KIAA1468 (Affinity Capture-MS), KRT2 (Affinity Capture-MS), KRT5 (Affinity Capture-MS), SNX17 (Affinity Capture-MS), MTM1 (Affinity Capture-MS), MTM1 (Affinity Capture-MS), MTFR1 (Affinity Capture-MS), SAMM50 (Affinity Capture-MS), CALU (Affinity Capture-MS), CIAO1 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JXT6, A0JMF6, A0JMK5, A2ALK8, A2BGG1, A6QLT4, A7MB43, G5ED68, O13819, O14830, P26045, P33402, P51432, Q09M05, Q13496, Q13613, Q15111, Q3USB7, Q4KWH5, Q4R6N0, Q4U2V3, Q52KU6, Q5EB32, Q5F452, Q5R6F6, Q5R9S3, Q5U581, Q62688, Q6AXQ4, Q6NU08, Q6TEL0, Q6XPS3, Q7TPM9, Q7ZXF1, Q8K394, Q8NCE2, Q8VE11, Q8VEL2, Q96EF0, Q96MI9
Diamond homologs: A0A0G2JXT6, A0JMK5, A2BGG1, A4FU01, A6QLT2, A6QLT4, A7MB43, E9PXF8, F4J3T8, F4JWB3, G5ED68, O13819, P47147, Q13496, Q13613, Q13614, Q13615, Q22712, Q2KJ24, Q3V1L6, Q52KU6, Q54GQ1, Q55E58, Q5EB32, Q5F452, Q5PQT2, Q5R6F6, Q5R9S3, Q5REB9, Q5U581, Q5ZIV1, Q6AXQ4, Q6NTN5, Q6NU08, Q6TEL0, Q7TPM9, Q7ZXF1, Q80TA6, Q8K296, Q8VE11
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TFEB | “up-regulates quantity by expression” | MTM1 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
947 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 183 |
| Likely pathogenic | 84 |
| Uncertain significance | 192 |
| Likely benign | 267 |
| Benign | 64 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1071778 | NM_000252.3(MTM1):c.339T>A (p.Cys113Ter) | Pathogenic |
| 1072286 | NM_000252.3(MTM1):c.1546A>T (p.Lys516Ter) | Pathogenic |
| 1074917 | NM_000252.3(MTM1):c.1459G>T (p.Glu487Ter) | Pathogenic |
| 1075319 | NM_000252.3(MTM1):c.1447G>T (p.Glu483Ter) | Pathogenic |
| 11054 | NM_000252.3(MTM1):c.1190A>G (p.Tyr397Cys) | Pathogenic |
| 11055 | NM_000252.3(MTM1):c.205C>T (p.Arg69Cys) | Pathogenic |
| 11057 | NM_000252.3(MTM1):c.141_144del | Pathogenic |
| 11059 | NM_000252.3(MTM1):c.721C>T (p.Arg241Cys) | Pathogenic |
| 11060 | NM_000252.3(MTM1):c.670C>T (p.Arg224Ter) | Pathogenic |
| 11061 | NM_000252.3(MTM1):c.605del (p.Leu202fs) | Pathogenic |
| 1172673 | NM_000252.3(MTM1):c.1400del (p.Leu467fs) | Pathogenic |
| 1301887 | NM_000252.3(MTM1):c.63+1G>T | Pathogenic |
| 1338243 | NM_000252.3(MTM1):c.1109C>G (p.Ser370Ter) | Pathogenic |
| 1338304 | NM_000252.3(MTM1):c.197C>T (p.Thr66Ile) | Pathogenic |
| 1338336 | NM_000252.3(MTM1):c.1228G>T (p.Glu410Ter) | Pathogenic |
| 1360711 | NM_000252.3(MTM1):c.310G>T (p.Glu104Ter) | Pathogenic |
| 1371544 | NM_000252.3(MTM1):c.819_820dup (p.Leu274fs) | Pathogenic |
| 1379211 | NM_000252.3(MTM1):c.548G>A (p.Trp183Ter) | Pathogenic |
| 1457292 | NC_000023.10:g.(?149761067)(149761149_?)del | Pathogenic |
| 1458095 | NM_000252.3(MTM1):c.1008_1009dup (p.Trp337fs) | Pathogenic |
| 1459032 | NM_000252.3(MTM1):c.590C>T (p.Thr197Ile) | Pathogenic |
| 158893 | NM_000252.3(MTM1):c.1053+1G>C | Pathogenic |
| 158894 | NM_000252.3(MTM1):c.1088_1089del (p.Lys363fs) | Pathogenic |
| 158895 | NM_000252.3(MTM1):c.109C>T (p.Arg37Ter) | Pathogenic |
| 158896 | NM_000252.3(MTM1):c.1120C>G (p.His374Asp) | Pathogenic |
| 158898 | NM_000252.3(MTM1):c.1136G>A (p.Trp379Ter) | Pathogenic |
| 158899 | NM_000252.3(MTM1):c.1137G>A (p.Trp379Ter) | Pathogenic |
| 158900 | NM_000252.3(MTM1):c.1139A>T (p.Asp380Val) | Pathogenic |
| 158901 | NM_000252.3(MTM1):c.1160C>A (p.Ser387Tyr) | Pathogenic |
| 158903 | NM_000252.3(MTM1):c.1191T>G (p.Tyr397Ter) | Pathogenic |
SpliceAI
2959 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:150596489:T:A | acceptor_gain | 1.0000 |
| X:150596493:TCTA:T | acceptor_loss | 1.0000 |
| X:150596494:CTA:C | acceptor_loss | 1.0000 |
| X:150596495:TA:T | acceptor_loss | 1.0000 |
| X:150596496:A:AG | acceptor_gain | 1.0000 |
| X:150596496:AGAC:A | acceptor_gain | 1.0000 |
| X:150596497:G:GT | acceptor_gain | 1.0000 |
| X:150596497:GA:G | acceptor_gain | 1.0000 |
| X:150596497:GAC:G | acceptor_gain | 1.0000 |
| X:150596497:GACG:G | acceptor_gain | 1.0000 |
| X:150596497:GACGT:G | acceptor_gain | 1.0000 |
| X:150596568:CTG:C | donor_gain | 1.0000 |
| X:150596568:CTGGT:C | donor_loss | 1.0000 |
| X:150596569:TGGT:T | donor_loss | 1.0000 |
| X:150596571:G:GC | donor_loss | 1.0000 |
| X:150596571:G:GG | donor_gain | 1.0000 |
| X:150596572:T:G | donor_loss | 1.0000 |
| X:150614695:GTAAA:G | donor_gain | 1.0000 |
| X:150614700:G:GG | donor_gain | 1.0000 |
| X:150638938:TCTA:T | acceptor_loss | 1.0000 |
| X:150638939:CTA:C | acceptor_loss | 1.0000 |
| X:150638940:TAGCC:T | acceptor_loss | 1.0000 |
| X:150638941:A:AG | acceptor_gain | 1.0000 |
| X:150638941:A:G | acceptor_loss | 1.0000 |
| X:150638942:G:GG | acceptor_gain | 1.0000 |
| X:150638942:G:GT | acceptor_loss | 1.0000 |
| X:150638942:GC:G | acceptor_gain | 1.0000 |
| X:150638942:GCC:G | acceptor_gain | 1.0000 |
| X:150638942:GCCA:G | acceptor_gain | 1.0000 |
| X:150638942:GCCAT:G | acceptor_gain | 1.0000 |
AlphaMissense
3988 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:150641399:G:C | R220T | 1.000 |
| X:150641399:G:T | R220M | 1.000 |
| X:150641400:G:C | R220S | 1.000 |
| X:150641400:G:T | R220S | 1.000 |
| X:150645843:G:C | R280T | 1.000 |
| X:150645864:C:A | A287D | 1.000 |
| X:150649791:C:G | H315D | 1.000 |
| X:150649801:G:C | R318P | 1.000 |
| X:150649884:T:A | W346R | 1.000 |
| X:150649884:T:C | W346R | 1.000 |
| X:150657890:T:C | C375R | 1.000 |
| X:150657892:C:G | C375W | 1.000 |
| X:150657899:G:A | G378R | 1.000 |
| X:150657899:G:C | G378R | 1.000 |
| X:150657900:G:A | G378E | 1.000 |
| X:150657900:G:T | G378V | 1.000 |
| X:150657902:T:A | W379R | 1.000 |
| X:150657902:T:C | W379R | 1.000 |
| X:150657905:G:C | D380H | 1.000 |
| X:150657906:A:C | D380A | 1.000 |
| X:150657906:A:T | D380V | 1.000 |
| X:150657909:G:C | R381T | 1.000 |
| X:150657909:G:T | R381M | 1.000 |
| X:150657910:G:C | R381S | 1.000 |
| X:150657910:G:T | R381S | 1.000 |
| X:150657960:G:T | R398M | 1.000 |
| X:150657998:T:A | W411R | 1.000 |
| X:150657998:T:C | W411R | 1.000 |
| X:150663565:T:A | W534R | 1.000 |
| X:150663565:T:C | W534R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000012678 (X:150581154 C>G), RS1000053320 (X:150633646 A>G), RS1000125314 (X:150622699 T>C), RS1000202607 (X:150639072 A>G), RS1000258369 (X:150565662 C>A), RS1000308493 (X:150665443 C>A), RS1000320606 (X:150655227 A>C), RS1000546466 (X:150662754 A>G), RS1000773581 (X:150641628 C>A,G,T), RS1000810666 (X:150612857 G>T), RS1000944585 (X:150613411 A>G), RS1001053801 (X:150673242 C>T), RS1001059710 (X:150604011 G>T), RS1001113695 (X:150593553 G>C), RS1001191466 (X:150567383 A>G)
Disease associations
OMIM: gene MIM:300415 | disease phenotypes: MIM:310400, MIM:160150, MIM:134610, MIM:614408
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| X-linked myotubular myopathy | Definitive | X-linked |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| X-linked myotubular myopathy | Definitive | XL |
Mondo (7): X-linked myotubular myopathy (MONDO:0010683), centronuclear myopathy (MONDO:0018947), neurodevelopmental disorder (MONDO:0700092), congenital fiber-type disproportion myopathy (MONDO:0009711), familial Mediterranean fever, autosomal dominant (MONDO:0007601), autosomal dominant centronuclear myopathy (MONDO:0008048), myopathy (MONDO:0005336)
Orphanet (6): X-linked centronuclear myopathy (Orphanet:596), Centronuclear myopathy (Orphanet:595), Congenital fiber-type disproportion myopathy (Orphanet:2020), Familial Mediterranean fever (Orphanet:342), Qualitative or quantitative defects of myotubularin (Orphanet:207110), Autosomal dominant centronuclear myopathy (Orphanet:169189)
HPO phenotypes
63 total (30 of 63 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000028 | Cryptorchidism |
| HP:0000048 | Bifid scrotum |
| HP:0000054 | Micropenis |
| HP:0000218 | High palate |
| HP:0000238 | Hydrocephalus |
| HP:0000256 | Macrocephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000275 | Narrow face |
| HP:0000276 | Long face |
| HP:0000278 | Retrognathia |
| HP:0000348 | High forehead |
| HP:0000467 | Neck muscle weakness |
| HP:0000478 | Abnormality of the eye |
| HP:0000544 | External ophthalmoplegia |
| HP:0000689 | Dental malocclusion |
| HP:0000807 | Glanular hypospadias |
| HP:0000808 | Penoscrotal hypospadias |
| HP:0000883 | Thin ribs |
| HP:0001166 | Arachnodactyly |
| HP:0001270 | Motor delay |
| HP:0001284 | Areflexia |
| HP:0001290 | Generalized hypotonia |
| HP:0001305 | Dandy-Walker malformation |
| HP:0001319 | Neonatal hypotonia |
| HP:0001371 | Flexion contracture |
| HP:0001382 | Joint hypermobility |
| HP:0001419 | X-linked recessive inheritance |
| HP:0001558 | Decreased fetal movement |
| HP:0001561 | Polyhydramnios |
| HP:0001622 | Premature birth |
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| potassium chromate(VI) | affects cotreatment, decreases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| trichostatin A | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | decreases expression | 1 |
| manganese chloride | decreases expression | 1 |
| gossypol acetic acid | increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | decreases expression, affects cotreatment | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Caffeine | affects phosphorylation | 1 |
| Manganese | decreases expression | 1 |
| Methotrexate | increases expression | 1 |
Cellosaurus cell lines
15 cell lines: 7 induced pluripotent stem cell, 3 finite cell line, 3 cancer cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A3JY | HPS2882 | Induced pluripotent stem cell | Male |
| CVCL_A3JZ | HPS2883 | Induced pluripotent stem cell | Male |
| CVCL_A3KA | HPS2884 | Induced pluripotent stem cell | Male |
| CVCL_A3KB | HPS2885 | Induced pluripotent stem cell | Male |
| CVCL_A3KC | HPS2886 | Induced pluripotent stem cell | Male |
| CVCL_A3KD | HPS2887 | Induced pluripotent stem cell | Male |
| CVCL_AD70 | GM06813 | Finite cell line | Male |
| CVCL_AD71 | GM10680 | Transformed cell line | Male |
| CVCL_AD85 | GM23984 | Transformed cell line | Male |
| CVCL_AD86 | GM24346 | Finite cell line | Male |
Clinical trials (associated diseases)
268 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00120055 | PHASE4 | COMPLETED | Association Between Systemic Exposure of Atorvastatin and Metabolites and Atorvastatin-induced Myotoxicity |
| NCT03633565 | PHASE4 | UNKNOWN | Comparative Study of Strategies for Management of Duchenne Myopathy (DM) |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT01225614 | PHASE3 | UNKNOWN | Efficacy and Tolerance of Early Launching of Nocturnal Non Invasive |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT00278564 | PHASE1 | TERMINATED | Stem Cell Transplantation in Idiopathic Inflammatory Myopathy Diseases |
| NCT03199469 | PHASE2/PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AT132 in Young Children With X-Linked Myotubular Myopathy (XLMTM) |
| NCT04915846 | PHASE1/PHASE2 | TERMINATED | Tamoxifen Therapy for Myotubular Myopathy |
| NCT07052929 | PHASE1/PHASE2 | RECRUITING | Study of ASP2957 in Male Participants With X-linked Myotubular Myopathy Who Need Ventilators |
| NCT01840657 | Not specified | COMPLETED | Myotubular Myopathy Event Study |
| NCT02453152 | Not specified | COMPLETED | Respiratory Muscle Function in Untreated X-Linked Myotubular Myopathy (XLMTM) |
| NCT02704273 | Not specified | COMPLETED | A Clinical Assessment Study in X-Linked Myotubular Myopathy (XLMTM) Subjects |
| NCT04064307 | Not specified | RECRUITING | Myotubular and Centronuclear Myopathy Patient Registry |
| NCT05711771 | Not specified | WITHDRAWN | Medication Therapy Management (MTM) for a Medicaid Managed Care Population Within Patient-Centered Medical Homes |
| NCT06581146 | Not specified | RECRUITING | A Study to Check Liver Health in Boys With XLMTM, a Serious Genetic Muscle Condition |
| NCT04033159 | PHASE1/PHASE2 | TERMINATED | Early Phase Human Drug Trial to Investigate Dynamin 101 (DYN101) in Patients ≥ 16 Years With Centronuclear Myopathies |
| NCT04743557 | PHASE1/PHASE2 | WITHDRAWN | Early Phase Human Drug Trial to Investigate DYN101 in Participants 2 to 17 Years With Centronuclear Myopathies |
| NCT00272883 | Not specified | RECRUITING | Molecular and Genetic Studies of Congenital Myopathies |
| NCT03351270 | Not specified | COMPLETED | Prospective Natural History Study of Patients With Myotubular Myopathy and Other CentroNuclear Myopathies |
| NCT04977648 | Not specified | WITHDRAWN | Natural History Study of Patients With Centronuclear Myopathies |
| NCT05099107 | Not specified | COMPLETED | Changes of Motor Function Tests in Congenital Myopathy Subjects Treated With Oral Salbutamol as Compared to no Treatment |
| NCT05982119 | Not specified | RECRUITING | Assessments in Patients With Muscular Pathology and in Control Subjects : The ActiLiège Next Study |
| NCT06157268 | Not specified | RECRUITING | The Natural History and Muscle Fatigability of Patients With Congenital Myopathies. |
| NCT06791369 | Not specified | NOT_YET_RECRUITING | The Prevalence of RYR1-related Disease |
| NCT07021820 | Not specified | RECRUITING | Multispectral Optoacoustic Tomography for Advanced Imaging of Centronuclear Myopathy |
| NCT07478172 | Not specified | RECRUITING | Effects of Whole-body Electrical Muscle Stimulation Exercise on Adults With Neuromuscular Disease |
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Related Atlas pages
- Associated diseases: X-linked myotubular myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant centronuclear myopathy, centronuclear myopathy, congenital fiber-type disproportion myopathy, familial Mediterranean fever, autosomal dominant, myopathy, X-linked myotubular myopathy