MTMR2
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Also known as KIAA1073
Summary
MTMR2 (myotubularin related protein 2, HGNC:7450) is a protein-coding gene on chromosome 11q21, encoding Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR2 (Q13614). Lipid phosphatase that specifically dephosphorylates the D-3 position of phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate, generating phosphatidylinositol and phosphatidylinositol 5-phosphate.
This gene is a member of the myotubularin family of phosphoinositide lipid phosphatases. The encoded protein possesses phosphatase activity towards phosphatidylinositol-3-phosphate and phosphatidylinositol-3,5-bisphosphate. Mutations in this gene are a cause of Charcot-Marie-Tooth disease type 4B, an autosomal recessive demyelinating neuropathy. Alternatively spliced transcript variants encoding multiple isoforms have been found for this gene.
Source: NCBI Gene 8898 — RefSeq curated summary.
At a glance
- Gene–disease (curated): demyelinating hereditary motor and sensory neuropathy (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 6
- Clinical variants (ClinVar): 682 total — 34 pathogenic, 25 likely-pathogenic
- Phenotypes (HPO): 13
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_016156
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7450 |
| Approved symbol | MTMR2 |
| Name | myotubularin related protein 2 |
| Location | 11q21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1073 |
| Ensembl gene | ENSG00000087053 |
| Ensembl biotype | protein_coding |
| OMIM | 603557 |
| Entrez | 8898 |
Gene structure
Transcript identifiers
Ensembl transcripts: 60 — 37 protein_coding, 11 nonsense_mediated_decay, 10 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000346299, ENST00000352297, ENST00000393223, ENST00000409459, ENST00000444541, ENST00000470011, ENST00000470293, ENST00000481642, ENST00000484818, ENST00000485988, ENST00000495134, ENST00000497683, ENST00000674528, ENST00000674610, ENST00000674901, ENST00000674924, ENST00000674950, ENST00000674968, ENST00000674974, ENST00000674989, ENST00000675022, ENST00000675024, ENST00000675030, ENST00000675034, ENST00000675174, ENST00000675196, ENST00000675237, ENST00000675288, ENST00000675320, ENST00000675362, ENST00000675413, ENST00000675438, ENST00000675454, ENST00000675477, ENST00000675489, ENST00000675495, ENST00000675636, ENST00000675652, ENST00000675660, ENST00000675767, ENST00000675807, ENST00000675848, ENST00000675896, ENST00000675910, ENST00000675922, ENST00000675933, ENST00000675957, ENST00000675981, ENST00000676027, ENST00000676146, ENST00000676166, ENST00000676177, ENST00000676261, ENST00000676268, ENST00000676272, ENST00000676378, ENST00000676388, ENST00000676393, ENST00000676432, ENST00000676440
RefSeq mRNA: 4 — MANE Select: NM_016156
NM_001243571, NM_016156, NM_201278, NM_201281
CCDS: CCDS8305, CCDS8306
Canonical transcript exons
ENST00000346299 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000000275 | 95832880 | 95835451 |
| ENSE00001099209 | 95836148 | 95836324 |
| ENSE00001099215 | 95838094 | 95838207 |
| ENSE00001099218 | 95844953 | 95845159 |
| ENSE00001099221 | 95849674 | 95849862 |
| ENSE00001099223 | 95841617 | 95841709 |
| ENSE00001099224 | 95850600 | 95850749 |
| ENSE00001894742 | 95923875 | 95924107 |
| ENSE00002688343 | 95847714 | 95847899 |
| ENSE00003529003 | 95858531 | 95858632 |
| ENSE00003541899 | 95862272 | 95862366 |
| ENSE00003593724 | 95857552 | 95857635 |
| ENSE00003626501 | 95865601 | 95865676 |
| ENSE00003629693 | 95861992 | 95862102 |
| ENSE00003690952 | 95888156 | 95888261 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 97.61.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 21.0784 / max 162.8225, expressed in 1800 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 121884 | 9.8724 | 1755 |
| 121882 | 8.9701 | 1694 |
| 121883 | 1.2541 | 905 |
| 121877 | 0.3274 | 72 |
| 121881 | 0.3218 | 153 |
| 121876 | 0.1426 | 52 |
| 121885 | 0.0854 | 25 |
| 121880 | 0.0521 | 31 |
| 121878 | 0.0404 | 24 |
| 121879 | 0.0120 | 4 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 97.61 | gold quality |
| parotid gland | UBERON:0001831 | 96.79 | gold quality |
| male germ cell | CL:0000015 | 95.98 | gold quality |
| cartilage tissue | UBERON:0002418 | 94.24 | gold quality |
| tibia | UBERON:0000979 | 93.45 | gold quality |
| buccal mucosa cell | CL:0002336 | 93.02 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.97 | gold quality |
| calcaneal tendon | UBERON:0003701 | 91.86 | gold quality |
| corpus callosum | UBERON:0002336 | 91.65 | gold quality |
| tendon | UBERON:0000043 | 91.56 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 91.51 | gold quality |
| bronchial epithelial cell | CL:0002328 | 91.39 | gold quality |
| islet of Langerhans | UBERON:0000006 | 90.76 | gold quality |
| cortical plate | UBERON:0005343 | 90.65 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 90.43 | gold quality |
| heart right ventricle | UBERON:0002080 | 90.29 | gold quality |
| synovial joint | UBERON:0002217 | 90.19 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 90.02 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 89.96 | gold quality |
| spinal cord | UBERON:0002240 | 89.72 | gold quality |
| embryo | UBERON:0000922 | 89.59 | gold quality |
| postcentral gyrus | UBERON:0002581 | 89.35 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 89.23 | gold quality |
| medial globus pallidus | UBERON:0002477 | 89.12 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 89.09 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.07 | gold quality |
| saphenous vein | UBERON:0007318 | 88.98 | gold quality |
| colonic mucosa | UBERON:0000317 | 88.96 | gold quality |
| popliteal artery | UBERON:0002250 | 88.95 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 88.93 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.44 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
108 targeting MTMR2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-101-3P | 99.94 | 75.03 | 2230 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-652-5P | 99.91 | 67.49 | 505 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 23)
- MTMR2 shares similar phosphatase activity and substrate specificity than its homologous proteins MTM1 and MTMR3 (PMID:11846405)
- A homozygous cytosine to thymine missense mutation at nucleotide position 847, resulting in an amino acid substitution of arginine to tryptophan at codon 283, was detected in exon 9 of the MTMR2 gene (PMID:12398840)
- MTMR2 interacts with MTMR5 via its coiled-coil domain and that mutations in the coiled-coil domain of either MTMR2 or MTMR5 abrogate this interaction. (PMID:12668758)
- REVIEW : MTMR2 belongs to the myotubularin family of phosphoinositides phosphatases (PMID:12925573)
- crystal structure of MTMR2, a protein tyrosine phosphatase that is a member of the myotubularin-related protein family. (PMID:14690594)
- Loss of MTMR13 (SBF2) function in Charcot-Marie-Tooth disease type 4B patients may lead to alterations in MTMR2 function and subsequent alterations in 3-phosphoinositide signaling. (PMID:15998640)
- analysis of the molecular basis for this unique substrate specificity of human myotubularin-related protein-2 (MTMR2) in complex with phosphoinositides (PMID:16410353)
- Loss of MTMR2, by decreasing Schwann cells proliferation and survival, may impair the first stages of myelination of the peripheral nervous system (PMID:17336078)
- review of the role of MTMR2 and MTMR13 and their involvement in the biology of Schwann cell and CMT4B neuropathies (PMID:17880751)
- REVIEW : MTMR2 and homologous proteins are mutated in several neuromuscular diseases (PMID:18429927)
- A phylogenetic study revealing co-evolution of myotubularins with PI 3-kinase class III complex (PMID:18774718)
- Mutations in LITAF, RAB7, LMNA, and MTMR2 genes are rare in Chinese Charcot-Marie-Tooth disease (CMT) patients. (PMID:20709679)
- MTMR2 phosphorylation is likely to be a critical mechanism by which MTMR2 access to its lipid substrate(s) is temporally and spatially regulated, thereby contributing to the control of downstream endosome maturation events. (PMID:21372139)
- Novel mutations in the PRX and the MTMR2 genes are responsible for unusual Charcot-Marie-Tooth disease phenotypes. (PMID:21741241)
- these results reveal that MTMR2 compartmentalization and potential subsequent effects on endosome maturation and endosome signaling are dynamically regulated through MAPK-mediated differential phosphorylation events. (PMID:23378027)
- we identified a novel mutation in MTMR2 in a family with CMT4B1 and myelin outfoldings (PMID:23781969)
- The expression of the endogenous transcript is induced in a heterologous cell line by ectopically expressing SOX10, and is nearly ablated in Schwann cells by impairing SOX10 function. Intriguingly, overexpressing the two MTMR2 protein isoforms in HeLa cells revealed that both localize to nuclear puncta and the shorter isoform displays higher nuclear localization compared to the longer isoform (PMID:27466180)
- report the case of a Charcot-Marie-Tooth type 4B1 patient with a novel mutation in the MTMR2 gene (nonsense mutation in exon 6c.484 C>T; p.Arg162*) who started to experience stridor and was diagnosed with bilateral vocal cord paralysis at the age of 18 months - case report and review (PMID:28190646)
- Expression of several MTMR2 isoforms ameliorates the myopathic phenotype owing to MTM1 loss, with increased muscle force, reduced myofiber atrophy, and reduction of the intracellular disorganization hallmarks associated with myotubular myopathy. (PMID:28934386)
- Our findings suggest that MTMR2 is an important promoter in gastric cancer (GC) invasion and metastasis by inactivating IFNgamma/STAT1 signaling and may act as a new prognostic indicator and a potential therapeutic target for GC. (PMID:31113461)
- Novel MTMR2 mutation causing severe Charcot-Marie-Tooth type 4B1 disease: a case report. (PMID:32488727)
- MTMR2 promotes the progression of NK/T cell lymphoma by targeting JAK1. (PMID:32767332)
- An integrative analysis reveals the prognostic value and potential functions of MTMR2 in hepatocellular carcinoma. (PMID:37907649)
Cross-species orthologs
15 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mtmr2 | ENSDARG00000004616 |
| mus_musculus | Mtmr2 | ENSMUSG00000031918 |
| rattus_norvegicus | Mtmr2 | ENSRNOG00000005923 |
| drosophila_melanogaster | mtm | FBGN0025742 |
| drosophila_melanogaster | Sbf | FBGN0025802 |
| drosophila_melanogaster | Mtmr6 | FBGN0028497 |
| drosophila_melanogaster | CG14411 | FBGN0030582 |
| drosophila_melanogaster | CG3632 | FBGN0030735 |
| drosophila_melanogaster | CG5026 | FBGN0035945 |
| caenorhabditis_elegans | mtm-1 | WBGENE00003475 |
| caenorhabditis_elegans | WBGENE00003476 | |
| caenorhabditis_elegans | WBGENE00003477 | |
| caenorhabditis_elegans | WBGENE00003478 | |
| caenorhabditis_elegans | WBGENE00003479 | |
| caenorhabditis_elegans | mtm-10 | WBGENE00021683 |
Paralogs (13): MTMR7 (ENSG00000003987), MTMR11 (ENSG00000014914), MTMR1 (ENSG00000063601), SBF1 (ENSG00000100241), MTMR3 (ENSG00000100330), MTMR8 (ENSG00000102043), MTMR9 (ENSG00000104643), MTMR4 (ENSG00000108389), SBF2 (ENSG00000133812), MTMR6 (ENSG00000139505), MTMR12 (ENSG00000150712), MTMR10 (ENSG00000166912), MTM1 (ENSG00000171100)
Protein
Protein identifiers
Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR2 — Q13614 (reviewed: Q13614)
Alternative names: Myotubularin-related protein 2, Phosphatidylinositol-3-phosphate phosphatase
All UniProt accessions (11): Q13614, A0A6Q8PF46, A0A6Q8PFL3, A0A6Q8PG25, A0A6Q8PGS5, A0A6Q8PGT1, A0A6Q8PGV9, A0A6Q8PHC4, A0A6Q8PHL9, A0A6Q8PHS7, C9JEX3
UniProt curated annotations — full annotation on UniProt →
Function. Lipid phosphatase that specifically dephosphorylates the D-3 position of phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate, generating phosphatidylinositol and phosphatidylinositol 5-phosphate. Regulates the level of these phosphoinositides critical for various biological processes including autophagy initiation and autophagosome maturation.
Subunit / interactions. Homodimer (via coiled-coil domain). Heterotetramer consisting of one MTMR2 dimer and one SBF2/MTMR13 dimer; specifically in peripheral nerves stabilizes SBF2/MTMR13 at the membranes and increases MTMR2 catalytic activity towards phosphatidylinositol 3,5-bisphosphate and to a lesser extent towards phosphatidylinositol 3-phosphate. Heterodimer with SBF1/MTMR5; acts as an adapter for the phosphatase MTMR2 to regulate MTMR2 catalytic activity and subcellular location. Heterodimer with MTMR12.
Subcellular location. Cytoplasm. Early endosome membrane. Perinuclear region. Cell projection. Axon. Endosome membrane.
Post-translational modifications. Phosphorylation at Ser-58 decreases MTMR2 localization to endocytic vesicular structures.
Disease relevance. Charcot-Marie-Tooth disease, demyelinating, type 4B1 (CMT4B1) [MIM:601382] A recessive demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. By convention autosomal recessive forms of demyelinating Charcot-Marie-Tooth disease are designated CMT4. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The coiled-coil domain mediates homodimerization. Also mediates interaction with SBF1/MTMR5. By mediating MTMR2 homodimerization, indirectly involved in SBF2/MTMR13 and MTMR2 heterotetramerization. The GRAM domain mediates binding to phosphatidylinositol 4-phosphate, phosphatidylinositol 5-phosphate, phosphatidylinositol 3,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate.
Similarity. Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13614-1 | 1 | yes |
| Q13614-2 | 2 |
RefSeq proteins (4): NP_001230500, NP_057240, NP_958435, NP_958438 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000387 | Tyr_Pase_dom | Domain |
| IPR003595 | Tyr_Pase_cat | Domain |
| IPR004182 | GRAM | Domain |
| IPR010569 | Myotubularin-like_Pase_dom | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR016130 | Tyr_Pase_AS | Active_site |
| IPR029021 | Prot-tyrosine_phosphatase-like | Homologous_superfamily |
| IPR030564 | Myotubularin | Family |
Pfam: PF02893, PF06602
Enzyme classification (BRENDA):
- EC 3.1.3.64 — phosphatidylinositol-3-phosphatase (BRENDA: 10 organisms, 32 substrates, 7 inhibitors, 2 Km, 0 kcat entries)
- EC 3.1.3.95 — phosphatidylinositol-3,5-bisphosphate 3-phosphatase (BRENDA: 2 organisms, 16 substrates, 1 inhibitors, 0 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| INOSITOL 1,3-BISPHOSPHATE | 0.0008–0.0037 | 2 |
Catalyzed reactions (Rhea), 4 shown:
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate (RHEA:12316)
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,5-bisphosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + phosphate (RHEA:39019)
- 1,2-dioctanoyl-sn-glycero-3-phospho-(1-D-myo-inositol-3-phosphate) + H2O = 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate (RHEA:42328)
- 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol-3,5-bisphosphate) + H2O = 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + phosphate (RHEA:45632)
UniProt features (104 total): helix 25, binding site 21, strand 20, turn 12, mutagenesis site 7, compositionally biased region 5, modified residue 3, sequence variant 3, domain 2, region of interest 2, chain 1, active site 1, splice variant 1, coiled-coil region 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1ZSQ | X-RAY DIFFRACTION | 1.82 |
| 1ZVR | X-RAY DIFFRACTION | 1.98 |
| 1LW3 | X-RAY DIFFRACTION | 2.3 |
| 1M7R | X-RAY DIFFRACTION | 2.6 |
| 5GNH | X-RAY DIFFRACTION | 2.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13614-F1 | 89.44 | 0.81 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 417 (phosphocysteine intermediate)
Ligand- & substrate-binding residues (21): 330; 330; 355; 355; 356; 356; 418; 418; 419; 419; 420; 420 …
Post-translational modifications (3): 6, 9, 58
Mutagenesis-validated functional residues (7):
| Position | Phenotype |
|---|---|
| 330 | decreased phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity. decreased phosphatidylinositol-3-phosphate phosp |
| 357 | decreased phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity. decreased phosphatidylinositol-3-phosphate phosp |
| 417 | loss of phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity. loss of phosphatidylinositol-3-phosphate phosphata |
| 419 | no effect on phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity. decreased phosphatidylinositol-3-phosphate ph |
| 422 | loss of phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity. loss of phosphatidylinositol-3-phosphate phosphata |
| 589–643 | loss of homodimerization. loss of interaction with sbf1. |
| 607 | decreased homodimerization. decreased interaction with sbf1. |
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-1483248 | Synthesis of PIPs at the ER membrane |
| R-HSA-1660499 | Synthesis of PIPs at the plasma membrane |
| R-HSA-1660516 | Synthesis of PIPs at the early endosome membrane |
| R-HSA-1660517 | Synthesis of PIPs at the late endosome membrane |
| R-HSA-1430728 | Metabolism |
| R-HSA-1483255 | PI Metabolism |
| R-HSA-1483257 | Phospholipid metabolism |
| R-HSA-556833 | Metabolism of lipids |
MSigDB gene sets: 298 (showing top):
GOBP_LIPID_MODIFICATION, GCM_MAP4K4, GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_PHOSPHATIDYLINOSITOL_METABOLIC_PROCESS, GOCC_VACUOLAR_MEMBRANE, GOBP_PHOSPHOLIPID_DEPHOSPHORYLATION, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_NERVOUS_SYSTEM_PROCESS, GOBP_NEGATIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_CELLULAR_COMPONENT_MAINTENANCE, GOBP_NEUROGENESIS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS
GO Biological Process (16): negative regulation of receptor internalization (GO:0002091), phosphatidylinositol biosynthetic process (GO:0006661), negative regulation of myelination (GO:0031642), myelin assembly (GO:0032288), negative regulation of endocytosis (GO:0045806), phosphatidylinositol dephosphorylation (GO:0046856), neuron development (GO:0048666), regulation of phosphatidylinositol dephosphorylation (GO:0060304), negative regulation of excitatory postsynaptic potential (GO:0090394), dendritic spine maintenance (GO:0097062), positive regulation of early endosome to late endosome transport (GO:2000643), negative regulation of receptor catabolic process (GO:2000645), lipid metabolic process (GO:0006629), dephosphorylation (GO:0016311), myelination (GO:0042552), phosphatidylinositol metabolic process (GO:0046488)
GO Molecular Function (6): phosphatidylinositol-3-phosphate phosphatase activity (GO:0004438), identical protein binding (GO:0042802), phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (GO:0052629), protein binding (GO:0005515), hydrolase activity (GO:0016787), phosphatidylinositol phosphate phosphatase activity (GO:0052866)
GO Cellular Component (18): nucleus (GO:0005634), cytoplasm (GO:0005737), vacuolar membrane (GO:0005774), cytosol (GO:0005829), synaptic vesicle (GO:0008021), postsynaptic density (GO:0014069), membrane (GO:0016020), axon (GO:0030424), dendrite (GO:0030425), early endosome membrane (GO:0031901), dendritic spine (GO:0043197), perinuclear region of cytoplasm (GO:0048471), extracellular exosome (GO:0070062), synaptic membrane (GO:0097060), endosome (GO:0005768), endosome membrane (GO:0010008), endomembrane system (GO:0012505), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| PI Metabolism | 4 |
| Phospholipid metabolism | 1 |
| Metabolism of lipids | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| phosphatidylinositol metabolic process | 2 |
| myelination | 2 |
| vacuole | 2 |
| bounding membrane of organelle | 2 |
| cytoplasm | 2 |
| neuron projection | 2 |
| regulation of receptor internalization | 1 |
| receptor internalization | 1 |
| negative regulation of receptor-mediated endocytosis | 1 |
| biosynthetic process | 1 |
| regulation of myelination | 1 |
| negative regulation of nervous system process | 1 |
| negative regulation of cellular process | 1 |
| cellular component assembly involved in morphogenesis | 1 |
| endocytosis | 1 |
| regulation of endocytosis | 1 |
| negative regulation of transport | 1 |
| negative regulation of cellular component organization | 1 |
| phospholipid dephosphorylation | 1 |
| neuron differentiation | 1 |
| cell development | 1 |
| regulation of lipid metabolic process | 1 |
| regulation of dephosphorylation | 1 |
| phosphatidylinositol dephosphorylation | 1 |
| regulation of phosphorus metabolic process | 1 |
| regulation of macromolecule metabolic process | 1 |
| negative regulation of biological process | 1 |
| excitatory postsynaptic potential | 1 |
| modulation of excitatory postsynaptic potential | 1 |
| cellular component maintenance | 1 |
| dendritic spine organization | 1 |
| positive regulation of intracellular transport | 1 |
| early endosome to late endosome transport | 1 |
| regulation of early endosome to late endosome transport | 1 |
| negative regulation of catabolic process | 1 |
| negative regulation of macromolecule metabolic process | 1 |
| receptor catabolic process | 1 |
| regulation of receptor catabolic process | 1 |
| primary metabolic process | 1 |
Protein interactions and networks
STRING
980 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MTMR2 | SBF2 | Q86WG5 | 919 |
| MTMR2 | NEFL | P07196 | 873 |
| MTMR2 | TPTE2 | Q6XPS3 | 861 |
| MTMR2 | DLG4 | P78352 | 848 |
| MTMR2 | PIK3C3 | Q8NEB9 | 810 |
| MTMR2 | PRX | Q9BXM0 | 799 |
| MTMR2 | SH3TC2 | Q8TF17 | 779 |
| MTMR2 | FIG4 | Q92562 | 771 |
| MTMR2 | SBF1 | O95248 | 771 |
| MTMR2 | GJB1 | P08034 | 749 |
| MTMR2 | PMP22 | Q01453 | 723 |
| MTMR2 | GDAP1 | Q8TB36 | 720 |
| MTMR2 | FGD4 | Q96M96 | 709 |
| MTMR2 | MPZL1 | O95297 | 685 |
| MTMR2 | MADD | Q8WXG6 | 625 |
IntAct
32 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CCDC22 | VPS26C | psi-mi:“MI:0914”(association) | 0.790 |
| MTMR2 | CCDC22 | psi-mi:“MI:0914”(association) | 0.730 |
| MTMR12 | MTMR2 | psi-mi:“MI:0407”(direct interaction) | 0.690 |
| CCDC22 | ZWINT | psi-mi:“MI:0914”(association) | 0.530 |
| MTMR1 | GMNN | psi-mi:“MI:0914”(association) | 0.530 |
| MTMR9 | CENPF | psi-mi:“MI:0914”(association) | 0.530 |
| MTMR2 | NEFL | psi-mi:“MI:0915”(physical association) | 0.510 |
| SBF2 | SBF1 | psi-mi:“MI:0914”(association) | 0.420 |
| MTMR2 | ERBB4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MTMR2 | ERBB3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MTMR2 | ROR2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| MTMR11 | IRS4 | psi-mi:“MI:0914”(association) | 0.350 |
| MTMR9 | DSP | psi-mi:“MI:0914”(association) | 0.350 |
| SBF1 | COL1A2 | psi-mi:“MI:0914”(association) | 0.350 |
| MTMR2 | LUC7L3 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| SCHIP1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| MTRF1 | MEIS1 | psi-mi:“MI:0914”(association) | 0.350 |
| SBF2 | PMPCB | psi-mi:“MI:2364”(proximity) | 0.270 |
| DISC1 | MTMR2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| CASS4 | MTMR2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| tcaA1 | MTMR2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MTMR2 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| metQ | MTMR2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (109): MTMR2 (Affinity Capture-RNA), MTMR2 (Affinity Capture-MS), CCDC22 (Affinity Capture-MS), MTMR1 (Affinity Capture-MS), MTMR10 (Affinity Capture-MS), MTMR12 (Affinity Capture-MS), NFKB1 (Affinity Capture-MS), SBF1 (Affinity Capture-MS), SBF2 (Affinity Capture-MS), TUBA1B (Affinity Capture-MS), MTMR2 (Affinity Capture-MS), MTMR2 (Affinity Capture-MS), MTMR2 (Affinity Capture-MS), MTMR2 (Proximity Label-MS), MTMR2 (Affinity Capture-MS)
ESM2 similar proteins: A0JMK5, A6QLT2, A6QQZ7, O08586, O43242, O43795, O54857, O55236, O60733, O60942, P11029, P11497, P14685, P23727, P26450, P27986, P29074, P46735, P60483, P60484, P97570, P97819, Q05096, Q13085, Q13613, Q13614, Q15139, Q28559, Q2KJ46, Q52KU6, Q5BJZ6, Q5EB32, Q5F452, Q5R685, Q5R6F6, Q5R8Q7, Q5REB9, Q5SWU9, Q5T2T1, Q5U2Y3
Diamond homologs: A0A0G2JXT6, A0JMK5, A2BGG1, A4FU01, A6QLT2, A6QLT4, A7MB43, E9PXF8, F4J3T8, F4JWB3, G5ED68, O13819, P47147, Q13496, Q13613, Q13614, Q13615, Q22712, Q2KJ24, Q3V1L6, Q52KU6, Q54GQ1, Q55E58, Q5EB32, Q5F452, Q5PQT2, Q5R6F6, Q5R9S3, Q5REB9, Q5U581, Q5ZIV1, Q6AXQ4, Q6NTN5, Q6NU08, Q6TEL0, Q7TPM9, Q7ZXF1, Q80TA6, Q8K296, Q8VE11
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MTMR2 | “down-regulates quantity” | “1-phosphatidyl-1D-myo-inositol 3-phosphate(3-)” | “chemical modification” |
| MTMR2 | “up-regulates quantity” | 1-phosphatidyl-1D-myo-inositol(1-) | “chemical modification” |
| SBF1 | “up-regulates activity” | MTMR2 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 32 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| PI Metabolism | 5 | 85.0× | 4e-07 |
| Phospholipid metabolism | 5 | 47.7× | 4e-06 |
| Metabolism of lipids | 6 | 9.0× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
682 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 34 |
| Likely pathogenic | 25 |
| Uncertain significance | 288 |
| Likely benign | 231 |
| Benign | 51 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069360 | NM_016156.6(MTMR2):c.1318C>T (p.Arg440Ter) | Pathogenic |
| 1070808 | NM_016156.6(MTMR2):c.1459_1460del (p.Val487fs) | Pathogenic |
| 1803781 | NM_016156.6(MTMR2):c.304C>T (p.Arg102Ter) | Pathogenic |
| 2038889 | NM_016156.6(MTMR2):c.928_929insTGATATTTACTGAGTACAGTAA (p.Asn310fs) | Pathogenic |
| 216114 | NM_016156.6(MTMR2):c.1034del (p.Asn345fs) | Pathogenic |
| 2190463 | NM_016156.6(MTMR2):c.484C>T (p.Arg162Ter) | Pathogenic |
| 241077 | NM_016156.6(MTMR2):c.832C>T (p.Gln278Ter) | Pathogenic |
| 2637502 | NM_016156.6(MTMR2):c.1096del (p.Lys367fs) | Pathogenic |
| 2819176 | NM_016156.6(MTMR2):c.579dup (p.Ala194fs) | Pathogenic |
| 2839875 | NM_016156.6(MTMR2):c.947dup (p.Phe317fs) | Pathogenic |
| 3011357 | NM_016156.6(MTMR2):c.37C>T (p.Gln13Ter) | Pathogenic |
| 3244697 | NC_000011.9:g.(?95568454)(95657118_?)del | Pathogenic |
| 3658204 | NM_016156.6(MTMR2):c.1693del (p.Tyr565fs) | Pathogenic |
| 3659428 | NM_016156.6(MTMR2):c.934C>T (p.Gln312Ter) | Pathogenic |
| 3666754 | NM_016156.6(MTMR2):c.1474A>T (p.Arg492Ter) | Pathogenic |
| 406679 | NM_016156.6(MTMR2):c.1537_1538dup (p.Ser514fs) | Pathogenic |
| 543342 | NM_016156.6(MTMR2):c.464_465del (p.Val154_Cys155insTer) | Pathogenic |
| 549685 | NM_016156.6(MTMR2):c.1164G>A (p.Trp388Ter) | Pathogenic |
| 6231 | NM_016156.6(MTMR2):c.1276C>T (p.Gln426Ter) | Pathogenic |
| 6233 | NM_016156.6(MTMR2):c.826G>T (p.Glu276Ter) | Pathogenic |
| 623390 | NM_016156.6(MTMR2):c.1768C>T (p.Gln590Ter) | Pathogenic |
| 6234 | NM_016156.6(MTMR2):c.1444C>T (p.Gln482Ter) | Pathogenic |
| 637472 | NM_016156.6(MTMR2):c.1593+1G>A | Pathogenic |
| 646293 | NM_016156.6(MTMR2):c.454_458del (p.Glu152fs) | Pathogenic |
| 647003 | NM_016156.6(MTMR2):c.1454_1457del (p.Asp485fs) | Pathogenic |
| 684408 | NM_016156.6(MTMR2):c.1490dup (p.Phe498fs) | Pathogenic |
| 684409 | NM_016156.6(MTMR2):c.1479+1G>A | Pathogenic |
| 684410 | NM_016156.6(MTMR2):c.1090C>T (p.Arg364Ter) | Pathogenic |
| 684411 | NM_016156.6(MTMR2):c.883C>T (p.Arg295Ter) | Pathogenic |
| 859440 | NM_016156.6(MTMR2):c.874del (p.Ser292fs) | Pathogenic |
SpliceAI
3358 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:95827784:A:AG | acceptor_gain | 1.0000 |
| 11:95827785:G:GA | acceptor_gain | 1.0000 |
| 11:95828024:GCTT:G | donor_gain | 1.0000 |
| 11:95828028:G:GG | donor_gain | 1.0000 |
| 11:95829181:A:AG | acceptor_gain | 1.0000 |
| 11:95829182:T:G | acceptor_gain | 1.0000 |
| 11:95829182:TATA:T | acceptor_loss | 1.0000 |
| 11:95829183:A:AG | acceptor_gain | 1.0000 |
| 11:95829183:ATAGT:A | acceptor_gain | 1.0000 |
| 11:95829184:T:G | acceptor_gain | 1.0000 |
| 11:95829185:A:AG | acceptor_gain | 1.0000 |
| 11:95829185:AGT:A | acceptor_gain | 1.0000 |
| 11:95829185:AGTG:A | acceptor_loss | 1.0000 |
| 11:95829186:G:GT | acceptor_gain | 1.0000 |
| 11:95829186:GT:G | acceptor_gain | 1.0000 |
| 11:95829186:GTG:G | acceptor_gain | 1.0000 |
| 11:95829186:GTGA:G | acceptor_gain | 1.0000 |
| 11:95829186:GTGAT:G | acceptor_gain | 1.0000 |
| 11:95829327:CCCAG:C | donor_loss | 1.0000 |
| 11:95829328:CCAG:C | donor_loss | 1.0000 |
| 11:95829329:CAG:C | donor_loss | 1.0000 |
| 11:95829330:AGGT:A | donor_loss | 1.0000 |
| 11:95829331:GG:G | donor_loss | 1.0000 |
| 11:95829333:T:A | donor_loss | 1.0000 |
| 11:95831005:T:TA | acceptor_gain | 1.0000 |
| 11:95831010:T:TA | acceptor_gain | 1.0000 |
| 11:95831011:G:A | acceptor_gain | 1.0000 |
| 11:95831015:ATTT:A | acceptor_gain | 1.0000 |
| 11:95831018:T:A | acceptor_gain | 1.0000 |
| 11:95831023:TAGCT:T | acceptor_loss | 1.0000 |
AlphaMissense
4207 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:95845078:A:G | W421R | 1.000 |
| 11:95845078:A:T | W421R | 1.000 |
| 11:95845080:C:A | G420V | 1.000 |
| 11:95845080:C:T | G420D | 1.000 |
| 11:95845081:C:G | G420R | 1.000 |
| 11:95845085:A:C | S418R | 1.000 |
| 11:95845085:A:T | S418R | 1.000 |
| 11:95845087:T:G | S418R | 1.000 |
| 11:95845088:G:C | C417W | 1.000 |
| 11:95845089:C:T | C417Y | 1.000 |
| 11:95845090:A:G | C417R | 1.000 |
| 11:95847731:A:G | W388R | 1.000 |
| 11:95847731:A:T | W388R | 1.000 |
| 11:95847824:G:C | H357D | 1.000 |
| 11:95847828:A:C | N355K | 1.000 |
| 11:95847828:A:T | N355K | 1.000 |
| 11:95849681:G:T | A329D | 1.000 |
| 11:95849687:G:T | A327D | 1.000 |
| 11:95849705:G:T | A321D | 1.000 |
| 11:95849772:C:G | D299H | 1.000 |
| 11:95849807:G:T | P287H | 1.000 |
| 11:95850618:T:A | R262S | 1.000 |
| 11:95850618:T:G | R262S | 1.000 |
| 11:95850619:C:A | R262I | 1.000 |
| 11:95850619:C:G | R262T | 1.000 |
| 11:95850731:A:G | W225R | 1.000 |
| 11:95850731:A:T | W225R | 1.000 |
| 11:95858613:A:G | F163S | 1.000 |
| 11:95862321:C:T | G103E | 1.000 |
| 11:95862322:C:G | G103R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000064185 (11:95924321 G>A), RS1000075635 (11:95865254 C>T), RS1000086525 (11:95924415 G>C), RS1000096018 (11:95878730 C>T), RS1000126044 (11:95899267 C>G), RS1000134942 (11:95924479 A>G), RS1000159667 (11:95849273 G>A), RS1000183960 (11:95839855 G>A,C), RS1000262258 (11:95891019 T>C), RS1000299248 (11:95872112 T>A,C), RS1000309032 (11:95885562 G>A), RS1000329838 (11:95892388 C>T), RS1000331186 (11:95877908 G>A,T), RS1000350233 (11:95842309 T>C), RS1000372546 (11:95834327 C>A,T)
Disease associations
OMIM: gene MIM:603557 | disease phenotypes: MIM:601382, MIM:118220
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| demyelinating hereditary motor and sensory neuropathy | Definitive | Autosomal recessive |
| Charcot-Marie-Tooth disease type 4B1 | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| demyelinating hereditary motor and sensory neuropathy | Definitive | AR |
Mondo (4): Charcot-Marie-Tooth disease type 4 (MONDO:0018995), Charcot-Marie-Tooth disease type 4B1 (MONDO:0011066), Charcot-Marie-Tooth disease (MONDO:0015626), demyelinating hereditary motor and sensory neuropathy (MONDO:0018776)
Orphanet (3): Charcot-Marie-Tooth disease type 4 (Orphanet:64749), Charcot-Marie-Tooth disease type 4B1 (Orphanet:99955), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166)
HPO phenotypes
13 total (13 of 13 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001270 | Motor delay |
| HP:0001762 | Talipes equinovarus |
| HP:0002460 | Distal muscle weakness |
| HP:0002650 | Scoliosis |
| HP:0002936 | Distal sensory impairment |
| HP:0003431 | Decreased motor nerve conduction velocity |
| HP:0003693 | Distal amyotrophy |
| HP:0003701 | Proximal muscle weakness |
| HP:0004336 | Myelin outfoldings |
| HP:0006958 | Abnormal auditory evoked potentials |
| HP:0007208 | Irregular myelin loops |
| HP:0010628 | Facial palsy |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008161_29 | Waist circumference adjusted for body mass index | 1.000000e-06 |
| GCST009615_13 | Triglyceride levels x loop diuretics use interaction | 1.000000e-06 |
| GCST011534_2 | Sun-seeking behavior | 4.000000e-09 |
| GCST90000025_173 | Appendicular lean mass | 5.000000e-15 |
| GCST90002390_40 | Mean corpuscular hemoglobin | 6.000000e-14 |
| GCST90002404_523 | Red cell distribution width | 1.000000e-20 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0004530 | triglyceride measurement |
| EFO:0010729 | sun exposure measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| C535420 | Charcot-Marie-Tooth disease, Type 4B1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
37 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 4 |
| (+)-JQ1 compound | decreases expression | 2 |
| Cyclosporine | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| TAK-243 | decreases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| 1-nitropyrene | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance, decreases methylation | 1 |
| Caffeine | affects phosphorylation | 1 |
| Camptothecin | decreases response to substance | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Drugs, Chinese Herbal | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Ketoconazole | decreases expression | 1 |
| Naled | affects expression | 1 |
| Naphthoquinones | increases expression | 1 |
| Nitrogen Oxides | affects expression, increases abundance, decreases methylation | 1 |
| Rotenone | increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1XV | Abcam HeLa MTMR2 KO | Cancer cell line | Female |
| CVCL_SZ27 | HAP1 MTMR2 (-) 1 | Cancer cell line | Male |
| CVCL_SZ28 | HAP1 MTMR2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
59 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04762758 | PHASE3 | UNKNOWN | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients |
| NCT00271635 | PHASE2 | COMPLETED | Ascorbic Acid Treatment in CMT1A Trial (AATIC) |
| NCT01401257 | PHASE2 | COMPLETED | Phase II, Randomized, Placebo-controlled Trial in Patients With Charcot-marie-tooth Disease Type 1A |
| NCT02561702 | PHASE2 | COMPLETED | Mexiletine for Muscle Cramps in Charcot Marie Tooth Disease |
| NCT02967679 | PHASE2 | COMPLETED | SERENDEM : MD1003 in Patients Suffering From Demyelinating Neuropathies, an Open Label Pilot Study |
| NCT03124459 | PHASE2 | TERMINATED | Study of ACE-083 in Patients With Charcot-Marie-Tooth Disease |
| NCT03254199 | PHASE2 | TERMINATED | A Study to Assess the Safety and Effectiveness of FLX-787 in Subjects With Charcot-Marie-Tooth Disease Experiencing Muscle Cramps. |
| NCT03943290 | PHASE2 | TERMINATED | Extension Study to Evaluate the Long-Term Effects of ACE-083 in Patients With Facioscapulohumeral Muscular Dystrophy (FSHD) and Charcot-Marie Tooth (CMT) Disease Types 1 and X (CMT1 and CMTX) |
| NCT05777226 | PHASE2 | UNKNOWN | Research of SORD-CMT Natural History and Epalrestat Treatment |
| NCT06482437 | PHASE2 | COMPLETED | Safety and Efficacy of NMD670 in Adult Patients With Type 1 and Type 2 Charcot-Marie-Tooth Disease |
| NCT05902351 | Not specified | RECRUITING | Natural History Study for Charcot Marie Tooth Disease |
| NCT01289704 | PHASE2/PHASE3 | UNKNOWN | Treadmill, Stretching and Proprioceptive Exercise (TreSPE) Rehabilitation Program for Charcot-Marie-Tooth Neuropathy Type 1A (CMT1A) |
| NCT00541164 | PHASE1/PHASE2 | COMPLETED | Effects of Coenzyme Q10 on Charcot-Marie-Tooth Disease |
| NCT05361031 | PHASE1/PHASE2 | COMPLETED | The Safety and Tolerability of Engensis (VM202) in Patients With Charcot-Marie-Tooth Disease Subtype 1A (CMT1A) |
| NCT07223632 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Treatment of Charcot-Marie-Tooth Disease, Axonal, Type 2S (CMT2S) in an Individual Patient |
| NCT00149045 | Not specified | COMPLETED | Follow up and Observation of Charcot Marie Tooth Disease in Families |
| NCT01193075 | Not specified | RECRUITING | Natural History Evaluation of Charcot Marie Tooth Disease (CMT) Types CMT1B, CMT2A, CMT4A, CMT4C, and Others |
| NCT01203085 | Not specified | COMPLETED | Development of Charcot Marie Tooth Disease (CMT) Pediatric Scale for Children With CMT |
| NCT01455623 | Not specified | COMPLETED | Development and Validation of a Disability Severity Index for CMT |
| NCT01918826 | Not specified | UNKNOWN | Evaluation of the Analgesic Efficiency of the Transcutaneous Neurostimulation in the Charcot Syndrome Marie Tooth on the Pains of Lower Limbs |
| NCT02001038 | Not specified | COMPLETED | Survey of Current Management of Orthopaedic Complications in CMT Patients |
| NCT02011204 | Not specified | COMPLETED | Study of Electrical Impedance Myography (EIM) in ALS |
| NCT02194010 | Not specified | COMPLETED | Disability Severity Scale (DSI) and Hereditary Motor and Sensory Neuropathy Overall Disability Scale (HMSN-R-ODS) |
| NCT02429947 | Not specified | COMPLETED | An Analysis of the Symptomatic Domains Most Relevant to Charcot Marie Tooth Neuropathy (CMT) Patients |
| NCT02532244 | Not specified | COMPLETED | Genetics of Pediatric-Onset Motor Neuron and Neuromuscular Diseases |
| NCT02699190 | Not specified | COMPLETED | LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies |
| NCT02788734 | Not specified | COMPLETED | Patient Reported Outcomes Measures (PROM) in Carpal Tunnel Therapies in Patients With Inherited Neuropathies |
| NCT02979145 | Not specified | UNKNOWN | Charcot-Marie-Tooth Disease (CMT) Infant Scale (INC-6611) |
| NCT03047369 | Not specified | RECRUITING | The Myelin Disorders Biorepository Project |
| NCT03460951 | Not specified | COMPLETED | Diffusion Tensor Imaging in Chronic Inflammatory Demyelinating Polyneuropathy (PIDC) |
| NCT03715283 | Not specified | COMPLETED | Change in MUNIX in Patients With CMT1A Undergoing a Home Ankle Strengthening Program Versus Standard of Care |
| NCT03782883 | Not specified | COMPLETED | The Impact of Charcot-Marie-Tooth Disease in the Real World |
| NCT03810508 | Not specified | TERMINATED | A Natural History Study of Charcot-Marie-Tooth 4J (CMT4J) |
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| NCT04010188 | Not specified | RECRUITING | A Registered Cohort Study on Charcot-Marie-Tooth Disease |
| NCT04283175 | Not specified | COMPLETED | Validation Study of Posturology Platforms for Evaluating Postural Control of Hemiparetic and Neuro-muscular Patients |
| NCT04461613 | Not specified | UNKNOWN | Physical Activity in Persons With Charcot-Marie-Tooth: Developing a Measurement Instrument |
| NCT04786522 | Not specified | COMPLETED | Irisin Levels in Patients With Charcot-Marie-Tooth (CMT) Disease |
| NCT04967716 | Not specified | UNKNOWN | Genetics of Charcot-Marie-Tooth Dystrophy and Related Diseases |
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Related Atlas pages
- Associated diseases: Charcot-Marie-Tooth disease type 4B1, demyelinating hereditary motor and sensory neuropathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease type 4, Charcot-Marie-Tooth disease type 4B1, demyelinating hereditary motor and sensory neuropathy