MTNAP1
gene geneOn this page
Also known as HLC-8MIG3FLJ20721SPEP1
Summary
MTNAP1 (mitochondrial nucleoid associated protein 1, HGNC:29601) is a protein-coding gene on chromosome 17q25.1, encoding Mitochondrial nucleoid-associated protein 1 (Q9BSJ5). Critical regulator of mitochondrial DNA (mtDNA) abundance.
Predicted to be involved in cell population proliferation; mitochondrial DNA metabolic process; and positive regulation of mitochondrial DNA replication. Located in mitochondrial nucleoid.
Source: NCBI Gene 55028 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 11 total
- MANE Select transcript:
NM_001351264
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29601 |
| Approved symbol | MTNAP1 |
| Name | mitochondrial nucleoid associated protein 1 |
| Location | 17q25.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HLC-8, MIG3, FLJ20721, SPEP1 |
| Ensembl gene | ENSG00000141219 |
| Ensembl biotype | protein_coding |
| OMIM | 620717 |
| Entrez | 55028 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 26 protein_coding
ENST00000255557, ENST00000268942, ENST00000359042, ENST00000426147, ENST00000535032, ENST00000577615, ENST00000582391, ENST00000582793, ENST00000585109, ENST00000893516, ENST00000893517, ENST00000893518, ENST00000893519, ENST00000934364, ENST00000934365, ENST00000934366, ENST00000934367, ENST00000934368, ENST00000934369, ENST00000934370, ENST00000934371, ENST00000953070, ENST00000953071, ENST00000953072, ENST00000953073, ENST00000953074
RefSeq mRNA: 9 — MANE Select: NM_001351264
NM_001100621, NM_001100622, NM_001288770, NM_001288771, NM_001351264, NM_001351265, NM_001386978, NM_001386979, NM_017941
CCDS: CCDS11694, CCDS42377, CCDS45767, CCDS74145
Canonical transcript exons
ENST00000535032 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001058278 | 73242896 | 73243003 |
| ENSE00001265743 | 73233220 | 73233325 |
| ENSE00001340095 | 73235476 | 73236995 |
| ENSE00002714742 | 73247241 | 73248959 |
| ENSE00003582896 | 73242244 | 73242351 |
| ENSE00003918173 | 73232433 | 73232489 |
Expression profiles
Bgee: expression breadth ubiquitous, 258 present calls, max score 92.55.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.5770 / max 136.6362, expressed in 1704 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 162564 | 4.7595 | 1568 |
| 162566 | 2.8192 | 1274 |
| 162565 | 0.4829 | 266 |
| 162568 | 0.2933 | 136 |
| 162567 | 0.2222 | 99 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 92.55 | gold quality |
| male germ cell | CL:0000015 | 89.92 | gold quality |
| calcaneal tendon | UBERON:0003701 | 89.32 | gold quality |
| left testis | UBERON:0004533 | 89.25 | gold quality |
| right testis | UBERON:0004534 | 89.06 | gold quality |
| testis | UBERON:0000473 | 88.25 | gold quality |
| ganglionic eminence | UBERON:0004023 | 87.73 | gold quality |
| biceps brachii | UBERON:0001507 | 87.35 | gold quality |
| gastrocnemius | UBERON:0001388 | 87.31 | gold quality |
| ventricular zone | UBERON:0003053 | 87.27 | gold quality |
| muscle of leg | UBERON:0001383 | 87.24 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.88 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 86.81 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.32 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.05 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 86.02 | gold quality |
| tendon | UBERON:0000043 | 85.65 | gold quality |
| cortical plate | UBERON:0005343 | 84.15 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 84.05 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 84.02 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 83.67 | gold quality |
| muscle organ | UBERON:0001630 | 83.65 | gold quality |
| parotid gland | UBERON:0001831 | 83.25 | silver quality |
| stromal cell of endometrium | CL:0002255 | 83.20 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 82.57 | gold quality |
| cerebellar cortex | UBERON:0002129 | 82.48 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 82.46 | gold quality |
| adrenal tissue | UBERON:0018303 | 82.36 | gold quality |
| apex of heart | UBERON:0002098 | 82.32 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 82.30 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.80 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
47 targeting MTNAP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-3065-3P | 99.87 | 70.25 | 1407 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-26A-1-3P | 99.64 | 66.81 | 788 |
| HSA-MIR-26A-2-3P | 99.64 | 66.82 | 786 |
| HSA-MIR-3685 | 99.62 | 68.83 | 1621 |
| HSA-MIR-885-5P | 99.59 | 68.59 | 879 |
| HSA-MIR-3942-3P | 99.57 | 69.03 | 2854 |
| HSA-MIR-4519 | 99.48 | 66.10 | 859 |
| HSA-MIR-4687-3P | 99.48 | 66.41 | 968 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
| HSA-MIR-501-3P | 99.33 | 66.12 | 651 |
| HSA-MIR-502-3P | 99.33 | 66.12 | 651 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-7974 | 99.24 | 65.48 | 1137 |
| HSA-MIR-8077 | 99.17 | 66.67 | 862 |
| HSA-MIR-6071 | 99.16 | 67.77 | 1780 |
| HSA-MIR-6815-3P | 99.13 | 68.98 | 1530 |
| HSA-MIR-548L | 99.06 | 70.90 | 2560 |
| HSA-MIR-9898 | 99.00 | 67.89 | 500 |
| HSA-MIR-4709-3P | 98.88 | 68.04 | 1594 |
| HSA-MIR-501-5P | 98.77 | 68.88 | 1328 |
| HSA-MIR-6830-3P | 98.62 | 68.07 | 1760 |
| HSA-MIR-4274 | 98.59 | 66.10 | 630 |
| HSA-MIR-1246 | 98.54 | 66.21 | 959 |
Literature-anchored findings (GeneRIF, showing 2)
- Uncharacterized protein C17orf80 - a novel interactor of human mitochondrial nucleoids. (PMID:37401363)
- C17orf80 binds the mitochondrial genome to promote its replication. (PMID:37676315)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Mtnap1 | ENSMUSG00000041623 |
| rattus_norvegicus | Mtnap1 | ENSRNOG00000024780 |
Protein
Protein identifiers
Mitochondrial nucleoid-associated protein 1 — Q9BSJ5 (reviewed: Q9BSJ5)
Alternative names: Cell migration-inducing gene 3 protein, Human lung cancer oncogene 8 protein, Protein C17orf80
All UniProt accessions (5): Q9BSJ5, I3L072, J3KT60, J3KTJ7, J3QLV1
UniProt curated annotations — full annotation on UniProt →
Function. Critical regulator of mitochondrial DNA (mtDNA) abundance. Binds dsDNA throughout the mitochondrial genome without sequence specificity and controls mtDNA copy number by promoting its replication. Also plays important roles in mitochondrial metabolism and cell proliferation.
Subcellular location. Mitochondrion inner membrane. Mitochondrion matrix. Mitochondrion nucleoid.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BSJ5-1 | 1 | yes |
| Q9BSJ5-2 | 2 | |
| Q9BSJ5-3 | 3 |
RefSeq proteins (9): NP_001094091, NP_001094092, NP_001275699, NP_001275700, NP_001338193, NP_001338194, NP_001373907, NP_001373908, NP_060411 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR037694 | MTNAP1 | Family |
UniProt features (22 total): sequence variant 7, splice variant 3, sequence conflict 3, region of interest 3, topological domain 2, compositionally biased region 2, chain 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BSJ5-F1 | 44.70 | 0.03 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 95 (showing top):
RNGTGGGC_UNKNOWN, MODULE_205, GOCC_MITOCHONDRIAL_ENVELOPE, NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON, GOCC_NUCLEOID, GOCC_MITOCHONDRIAL_MATRIX, GOCC_ORGANELLE_INNER_MEMBRANE, SCGGAAGY_ELK1_02, MANALO_HYPOXIA_DN, GOCC_ORGANELLE_ENVELOPE, BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_A, VANOEVELEN_MYOGENESIS_SIN3A_TARGETS, KUMAR_PATHOGEN_LOAD_BY_MACROPHAGES, ZWANG_DOWN_BY_2ND_EGF_PULSE, KRAS.600.LUNG.BREAST_UP.V1_DN
GO Biological Process (0):
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial nucleoid (GO:0042645), extracellular exosome (GO:0070062), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| mitochondrion | 1 |
| mitochondrial matrix | 1 |
| nucleoid | 1 |
| intracellular membraneless organelle | 1 |
| extracellular vesicle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1356 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MTNAP1 | VPS4B | O75351 | 583 |
| MTNAP1 | PRY | O14603 | 445 |
| MTNAP1 | VCF1 | Q969W3 | 400 |
| MTNAP1 | PLAC1 | Q9HBJ0 | 400 |
| MTNAP1 | ZNF534 | Q76KX8 | 399 |
| MTNAP1 | GAB4 | Q2WGN9 | 392 |
| MTNAP1 | BSPH1 | Q075Z2 | 390 |
| MTNAP1 | SPATA31D1 | Q6ZQQ2 | 390 |
| MTNAP1 | ZBED5 | Q49AG3 | 368 |
| MTNAP1 | TMEM185B | Q9H7F4 | 353 |
| MTNAP1 | BLTP3B | A0JNW5 | 337 |
| MTNAP1 | GRAMD2A | Q8IUY3 | 323 |
| MTNAP1 | HHATL | Q9HCP6 | 316 |
| MTNAP1 | ATP5PD | O75947 | 303 |
| MTNAP1 | ATP5PF | P18859 | 300 |
IntAct
74 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CAMKV | AP3B1 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC39A5 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| MTNAP1 | FLNA | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYG1 | MTNAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PIAS4 | MTNAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PDPK1 | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| TOR1AIP2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| HLA-DPA1 | TYW5 | psi-mi:“MI:0914”(association) | 0.530 |
| IL13RA2 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| HADHA | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| YBEY | NME4 | psi-mi:“MI:0914”(association) | 0.530 |
| LRP1 | NME4 | psi-mi:“MI:0914”(association) | 0.530 |
| HADHB | POTEI | psi-mi:“MI:0914”(association) | 0.530 |
| HADHA | GPC4 | psi-mi:“MI:0914”(association) | 0.530 |
| CCT8L2 | ACSL4 | psi-mi:“MI:0914”(association) | 0.530 |
| HSPA1B | MTNAP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SIRT4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| DYRK1A | TEX13D | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZB | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| FARP1 | SDC3 | psi-mi:“MI:0914”(association) | 0.350 |
| H2BC21 | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| PSPC1 | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| SRP9 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (310): C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), KCNA5 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS), C17orf80 (Affinity Capture-MS)
ESM2 similar proteins: A2ADZ8, A6NNH2, D2J0Y4, D3YU32, P0C2Y1, Q0VET5, Q12802, Q14676, Q149B8, Q283Q6, Q2TBI7, Q3KR64, Q3U0P1, Q4KMZ1, Q4R736, Q5QJ38, Q5R5G4, Q5T1N1, Q5TM68, Q5VWK0, Q5VYM1, Q5ZK13, Q68A65, Q6AZ54, Q6NXZ1, Q6PG16, Q6PIX9, Q7YR40, Q7Z572, Q86Y26, Q8BHP2, Q8BHW6, Q8C0D9, Q8C5V8, Q8C9M2, Q8CGM2, Q8N5Q1, Q8NCD3, Q8WP21, Q924C5
Diamond homologs: Q5R5G4, Q6PIX9, Q9BSJ5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 96 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Attachment and Entry | 5 | 43.5× | 7e-06 |
| Defective B4GALT7 causes EDS, progeroid type | 5 | 41.4× | 7e-06 |
| Defective B3GAT3 causes JDSSDHD | 5 | 41.4× | 7e-06 |
| Defective B3GALT6 causes EDSP2 and SEMDJL1 | 5 | 41.4× | 7e-06 |
| HS-GAG degradation | 5 | 36.0× | 1e-05 |
| Respiratory syncytial virus (RSV) attachment and entry | 5 | 36.0× | 1e-05 |
| Initiation of coagulation cascade | 5 | 34.5× | 1e-05 |
| Glycosaminoglycan-protein linkage region biosynthesis | 5 | 28.5× | 2e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
11 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 5 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
921 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:73242889:T:TA | acceptor_gain | 1.0000 |
| 17:73242893:CA:C | acceptor_loss | 1.0000 |
| 17:73242894:A:AG | acceptor_gain | 1.0000 |
| 17:73242894:AG:A | acceptor_gain | 1.0000 |
| 17:73242894:AGGCT:A | acceptor_gain | 1.0000 |
| 17:73242895:G:GG | acceptor_gain | 1.0000 |
| 17:73242895:GG:G | acceptor_gain | 1.0000 |
| 17:73242895:GGCT:G | acceptor_gain | 1.0000 |
| 17:73242895:GGCTG:G | acceptor_gain | 1.0000 |
| 17:73242999:TCTGA:T | donor_gain | 1.0000 |
| 17:73243000:CTGAG:C | donor_loss | 1.0000 |
| 17:73243001:TGAGT:T | donor_loss | 1.0000 |
| 17:73243002:GA:G | donor_gain | 1.0000 |
| 17:73243003:AGT:A | donor_loss | 1.0000 |
| 17:73243004:G:A | donor_loss | 1.0000 |
| 17:73243004:G:GG | donor_gain | 1.0000 |
| 17:73243005:T:A | donor_loss | 1.0000 |
| 17:73233154:A:AG | acceptor_gain | 0.9900 |
| 17:73233155:G:GG | acceptor_gain | 0.9900 |
| 17:73233247:A:AG | acceptor_gain | 0.9900 |
| 17:73233247:ACTC:A | acceptor_gain | 0.9900 |
| 17:73233247:ACTCG:A | acceptor_gain | 0.9900 |
| 17:73233323:CGGG:C | donor_loss | 0.9900 |
| 17:73233324:GG:G | donor_gain | 0.9900 |
| 17:73233324:GGGTA:G | donor_loss | 0.9900 |
| 17:73233325:GG:G | donor_gain | 0.9900 |
| 17:73233326:G:GA | donor_loss | 0.9900 |
| 17:73233327:T:A | donor_loss | 0.9900 |
| 17:73242242:A:AG | acceptor_gain | 0.9900 |
| 17:73242243:G:GG | acceptor_gain | 0.9900 |
AlphaMissense
3981 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:73235534:T:C | F18L | 0.984 |
| 17:73235536:T:A | F18L | 0.984 |
| 17:73235536:T:G | F18L | 0.984 |
| 17:73235513:T:C | C11R | 0.982 |
| 17:73235554:C:A | H24Q | 0.973 |
| 17:73235554:C:G | H24Q | 0.973 |
| 17:73235544:T:C | L21S | 0.972 |
| 17:73235539:A:C | K19N | 0.969 |
| 17:73235539:A:T | K19N | 0.969 |
| 17:73236872:T:A | W464R | 0.968 |
| 17:73236872:T:C | W464R | 0.968 |
| 17:73235564:T:A | C28S | 0.966 |
| 17:73235565:G:C | C28S | 0.966 |
| 17:73235515:T:G | C11W | 0.965 |
| 17:73235548:A:C | K22N | 0.965 |
| 17:73235548:A:T | K22N | 0.965 |
| 17:73235552:C:G | H24D | 0.964 |
| 17:73235513:T:A | C11S | 0.963 |
| 17:73235514:G:C | C11S | 0.963 |
| 17:73235565:G:A | C28Y | 0.959 |
| 17:73235566:T:G | C28W | 0.955 |
| 17:73235564:T:C | C28R | 0.952 |
| 17:73235522:T:A | C14S | 0.950 |
| 17:73235523:G:C | C14S | 0.950 |
| 17:73236875:T:C | F465L | 0.950 |
| 17:73236877:T:A | F465L | 0.950 |
| 17:73236877:T:G | F465L | 0.950 |
| 17:73235524:T:G | C14W | 0.948 |
| 17:73235541:G:C | R20P | 0.948 |
| 17:73235535:T:C | F18S | 0.947 |
dbSNP variants (sampled 300 via entrez): RS1000011998 (17:73239086 G>A), RS1000087812 (17:73244762 C>T), RS1000147716 (17:73245599 G>A), RS1000524839 (17:73244982 G>A), RS1000532584 (17:73241319 G>A,T), RS1000647135 (17:73241455 G>A), RS1000647397 (17:73240020 T>A), RS1000902746 (17:73234519 C>A,T), RS1000929382 (17:73231396 C>T), RS1001129809 (17:73246467 C>T), RS1001200119 (17:73238347 G>T), RS1001235126 (17:73234254 A>G), RS1001312504 (17:73244179 A>G), RS1001497537 (17:73246263 G>A), RS1001615001 (17:73245247 G>A,T)
Disease associations
OMIM: gene MIM:620717 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002385_318 | High light scatter reticulocyte count | 6.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007986 | reticulocyte count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression | 3 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Air Pollutants | increases abundance, affects expression | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Lead | affects expression | 1 |
| Methotrexate | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Nickel | decreases expression | 1 |
| Oxygen | decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | increases expression | 1 |
| Metribolone | increases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B5JM | HAP1 C17orf80 (-) 2 | Cancer cell line | Male |
| CVCL_B5JN | HAP1 C17orf80 (-) 3 | Cancer cell line | Male |
| CVCL_B5JP | HAP1 C17orf80 (-) 4 | Cancer cell line | Male |
| CVCL_B5JQ | HAP1 C17orf80 (-) 5 | Cancer cell line | Male |
| CVCL_XM26 | HAP1 C17orf80 (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.